Guide to the Human Genome
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Search of human proteins with 239756535

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756535 PREDICTED: hypothetical protein [Homo sapiens]
         (90 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756535 PREDICTED: hypothetical protein [Homo sapiens]           196   3e-51
gi|239751051 PREDICTED: hypothetical protein [Homo sapiens]           196   3e-51
gi|239745492 PREDICTED: hypothetical protein XP_002343473 [Homo ...   196   3e-51
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         35   0.010
gi|24430197 interleukin 17 receptor C isoform 1 precursor [Homo ...    34   0.028
gi|90669934 interleukin 17 receptor C isoform 3 precursor [Homo ...    34   0.028
gi|24430195 interleukin 17 receptor C isoform 2 precursor [Homo ...    34   0.028
gi|58761548 tau tubulin kinase 1 [Homo sapiens]                        33   0.048
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]               33   0.063
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    32   0.082
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    32   0.082
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]               32   0.082
gi|194363768 homeobox D9 [Homo sapiens]                                32   0.082
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    32   0.082
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    32   0.082
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    32   0.082
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    32   0.082
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    32   0.082
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    32   0.082
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    32   0.082
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]       32   0.082
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]       32   0.082
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      32   0.11 
gi|91208420 bassoon protein [Homo sapiens]                             32   0.11 
gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens]        32   0.11 
gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens]        32   0.11 
gi|4504733 insulin receptor substrate 4 [Homo sapiens]                 32   0.14 
gi|64084766 fidgetin [Homo sapiens]                                    31   0.18 
gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens]    31   0.18 
gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo sap...    31   0.18 

>gi|239756535 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score =  196 bits (498), Expect = 3e-51
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60
          MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR
Sbjct: 1  MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60

Query: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90
          RSHLRGEEAGERRMDRTQAREVRPETGSLP
Sbjct: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90


>gi|239751051 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score =  196 bits (498), Expect = 3e-51
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60
          MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR
Sbjct: 1  MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60

Query: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90
          RSHLRGEEAGERRMDRTQAREVRPETGSLP
Sbjct: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90


>gi|239745492 PREDICTED: hypothetical protein XP_002343473 [Homo
          sapiens]
          Length = 90

 Score =  196 bits (498), Expect = 3e-51
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60
          MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR
Sbjct: 1  MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60

Query: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90
          RSHLRGEEAGERRMDRTQAREVRPETGSLP
Sbjct: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 32   DPGNPGEGRGVGPGHGPGGPRPPALRSHRRS-HLRGEEAGERRMDRTQAREVRPE 85
            DP    +G+  GPG G   PR PAL S  R+ H     A +R   + + +EV+ E
Sbjct: 2046 DPRKKKKGKEAGPGAGLPPPRAPALPSEARAPHASSLTAAKRSKAKAKGKEVKKE 2100


>gi|24430197 interleukin 17 receptor C isoform 1 precursor [Homo
           sapiens]
          Length = 791

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 13/17 (76%), Positives = 13/17 (76%)

Query: 33  PGNPGEGRGVGPGHGPG 49
           PG P  GRGVGPG GPG
Sbjct: 770 PGTPAPGRGVGPGAGPG 786


>gi|90669934 interleukin 17 receptor C isoform 3 precursor [Homo
           sapiens]
          Length = 705

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 13/17 (76%), Positives = 13/17 (76%)

Query: 33  PGNPGEGRGVGPGHGPG 49
           PG P  GRGVGPG GPG
Sbjct: 684 PGTPAPGRGVGPGAGPG 700


>gi|24430195 interleukin 17 receptor C isoform 2 precursor [Homo
           sapiens]
          Length = 720

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 13/17 (76%), Positives = 13/17 (76%)

Query: 33  PGNPGEGRGVGPGHGPG 49
           PG P  GRGVGPG GPG
Sbjct: 699 PGTPAPGRGVGPGAGPG 715


>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
          Length = 1321

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 39   GRGVGPGHGPGGPRPPALRSHR----RSHLRGEEAGERRMDRTQAREVRPETGSLP 90
            GRG+GPG    G RPPA RS R     S  R   A  R    ++     P   + P
Sbjct: 1213 GRGLGPGRAQAGARPPAPRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQARP 1268


>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 18   WSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGE 67
            W    G+S+      PG P E RG G G G  GP     +S R S L GE
Sbjct: 1235 WHDGPGTSEHREMEAPGGPSEDRG-GKGRGGPGPAQRVPKSGRSSSLDGE 1283



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 31  VDPGNPGEGRGVGPGHGPGGPR----PPALRSHRRSHLRGEEAGERR 73
           + P NPG+G G   G   G P     P + R H +S   G E G  R
Sbjct: 943 IPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQS--GGPEHGPER 987


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 13  RCSPSWSGTSGSSDF-GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEEAGE 71
           R  P  +G  G   F G P +PG PG    +GP   PG P  P          +  +AGE
Sbjct: 209 RGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG---KPGKAGE 265

Query: 72  RRMDRTQAREVRPETGSLP 90
           R     Q     P T  LP
Sbjct: 266 RGPPGPQGARGFPGTPGLP 284



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 29/86 (33%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 2   RAER--PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSH 59
           R ER  PG+R     SP   G  G    G P  PG  G     GP   PG   PP L+  
Sbjct: 698 RGERGFPGERG----SPGAQGLQGPR--GLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 751

Query: 60  RRSHLRGEEAGERRMDRTQAREVRPE 85
                    AG +  DR    E  PE
Sbjct: 752 PGERGAAGIAGPKG-DRGDVGEKGPE 776



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 9/46 (19%)

Query: 28  GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRG---EEAG 70
           G P  PGNPG      P   PG P PP L  +  + + G   E+AG
Sbjct: 153 GEPGTPGNPG------PPGPPGPPGPPGLGGNFAAQMAGGFDEKAG 192



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 20  GTSGSSDF-GFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
           G  G S F G P  PG PGEG   G    PG    P L
Sbjct: 657 GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL 694



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 19   SGTSGSSDFGFPVDPGNP----GEGRGVGPGHGPGGPRPP 54
            SG  G++    P+ P  P    GE    GP   PG P PP
Sbjct: 1172 SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1211



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 16   PSWSGTSGSSDF----GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
            P   G  G   F    G P  PG  G+    GP  GP GPR P
Sbjct: 1124 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPA-GPSGPRGP 1165



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 6   PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
           PG+R   R  P+ +  +  +D G P   G PG    VGP  GPG P  P  +
Sbjct: 329 PGERG--RTGPAGAAGARGND-GQPGPAGPPGP---VGPAGGPGFPGAPGAK 374



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 34  GNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEEAGERRMDRTQAREVRPETGSLP 90
           G PG+ + +    GP GP+ PA     R   RG++ GE+     + R+  P T   P
Sbjct: 107 GEPGDIKDIVGPKGPPGPQGPAGEQGPRGD-RGDK-GEKGAPGPRGRDGEPGTPGNP 161


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 13  RCSPSWSGTSGSSDF-GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEEAGE 71
           R  P  +G  G   F G P +PG PG    +GP   PG P  P          +  +AGE
Sbjct: 140 RGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG---KPGKAGE 196

Query: 72  RRMDRTQAREVRPETGSLP 90
           R     Q     P T  LP
Sbjct: 197 RGPPGPQGARGFPGTPGLP 215



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 29/86 (33%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 2   RAER--PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSH 59
           R ER  PG+R     SP   G  G    G P  PG  G     GP   PG   PP L+  
Sbjct: 629 RGERGFPGERG----SPGAQGLQGPR--GLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 682

Query: 60  RRSHLRGEEAGERRMDRTQAREVRPE 85
                    AG +  DR    E  PE
Sbjct: 683 PGERGAAGIAGPKG-DRGDVGEKGPE 707



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 9/46 (19%)

Query: 28  GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRG---EEAG 70
           G P  PGNPG      P   PG P PP L  +  + + G   E+AG
Sbjct: 84  GEPGTPGNPG------PPGPPGPPGPPGLGGNFAAQMAGGFDEKAG 123



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 20  GTSGSSDF-GFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
           G  G S F G P  PG PGEG   G    PG    P L
Sbjct: 588 GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL 625



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 19   SGTSGSSDFGFPVDPGNP----GEGRGVGPGHGPGGPRPP 54
            SG  G++    P+ P  P    GE    GP   PG P PP
Sbjct: 1103 SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1142



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 16   PSWSGTSGSSDF----GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
            P   G  G   F    G P  PG  G+    GP  GP GPR P
Sbjct: 1055 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPA-GPSGPRGP 1096



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 6   PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
           PG+R   R  P+ +  +  +D G P   G PG    VGP  GPG P  P  +
Sbjct: 260 PGERG--RTGPAGAAGARGND-GQPGPAGPPGP---VGPAGGPGFPGAPGAK 305



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 34 GNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEEAGERRMDRTQAREVRPETGSLP 90
          G PG+ + +    GP GP+ PA     R   RG++ GE+     + R+  P T   P
Sbjct: 38 GEPGDIKDIVGPKGPPGPQGPAGEQGPRGD-RGDK-GEKGAPGPRGRDGEPGTPGNP 92


>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
          Length = 2526

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 10   PVMRCSPSWSGTSGS-SDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEE 68
            P  + SP   G  G   + GFP DPGNPG+   +    G  G +    RS ++  ++G  
Sbjct: 1490 PGSQGSPGSRGAPGQYGEKGFPGDPGNPGQNNNIKGQKGSKGEQGRQGRSGQKG-VQGSP 1548

Query: 69   AGERRMDRTQAREVRPETG 87
            +      R   R +R  +G
Sbjct: 1549 SSRGSRGREGQRGLRGVSG 1567



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 28   GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRS-HLRGEE 68
            GFP D G  G+   +G    PGGP P   R    +  L+GEE
Sbjct: 1671 GFPGDAGQKGD---IGNPGIPGGPGPKGFRGLALTVGLKGEE 1709


>gi|194363768 homeobox D9 [Homo sapiens]
          Length = 352

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 28  GFPVDPGNPGEGRGVGPGHGPG-GPRPPALRSH 59
           GFP   G  G G G GPG GP  GP  PA   H
Sbjct: 125 GFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRH 157


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
            sapiens]
          Length = 1691

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 16   PSWSGTSGSSD----FGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
            P + GT G        G P +PG PGE   VG G  PG P PP
Sbjct: 1121 PGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPP 1163



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 6   PGDR-----PVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG---PRPPAL 56
           PG++     P ++  P   G  G++  G P  PG PGE RG     GP G   P PP L
Sbjct: 367 PGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGE-RGQKGDEGPPGISIPGPPGL 424



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 10  PVMRCSPSWSGTSGSSDF-GFPVDPGNPGE-GRGVGPGH--GPGGPRPPAL 56
           P  R  P   G +G     G P DPG PGE GR    G     G P PP L
Sbjct: 294 PGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGL 344



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/37 (43%), Positives = 16/37 (43%)

Query: 20   GTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
            G  G   FG P  PG PG     G G  PG P  P L
Sbjct: 1182 GEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGL 1218



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 6    PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRS 58
            PGD P     P + G  G   D G P  PG  G     GP    G P PP   S
Sbjct: 1411 PGD-PGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSS 1463



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 10/51 (19%)

Query: 16  PSWSGTSG-SSDFGFPVDPGNPGEG---------RGVGPGHGPGGPRPPAL 56
           P + G  G   D GFP  PG PG             VGP   PG   PP L
Sbjct: 765 PGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL 815



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 6    PGDRPVMRCSPSWSGTSGS-SDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
            P   P +   P   G  GS  D G P  PG PG     G    PG P PP
Sbjct: 1081 PKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP 1130



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 16  PSWSGTSGSSDF---GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           P + G  G   F   G P  PG PG    +GP    G P PP
Sbjct: 742 PGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPP 783



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 16   PSWSGTSGSSDF-GFPVDPGNPG-EGR-----GVGPGHGPGGPRPPAL 56
            P   G SG   + G P DPG PG  G+       GP   PG P  P L
Sbjct: 972  PGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGL 1019



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/29 (48%), Positives = 14/29 (48%)

Query: 28  GFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
           G P  PGNPG    VG    PG P  P L
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGL 691



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 16  PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           P   G  GS   GFP   G  G+    GP   PG P  P
Sbjct: 499 PGLPGPPGS--LGFPGQKGEKGQAGATGPKGLPGIPGAP 535



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGE----------GRGVGPGHG-PGGPRP 53
           PG        P   G  G   D G P DPG PG+          G    PG G PG P P
Sbjct: 655 PGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGP 714



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 16  PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG 49
           P  +GT G    GFP  PG PG     GP   PG
Sbjct: 122 PGCNGTKGER--GFPGSPGFPGLQGPPGPPGIPG 153



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 20  GTSGSSDFGFPVDPGNPGEGRGVG----PGHGPGGP 51
           G +   + G P +PG PG    +G    PG GP GP
Sbjct: 595 GITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGP 630



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 16   PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
            P   G  G    G P  PGNPG    VG    PG P  P  +
Sbjct: 1076 PGLPGPKGEP--GLPGYPGNPGIKGSVGDPGLPGLPGTPGAK 1115


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
            sapiens]
          Length = 1685

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 16   PSWSGTSGSSD----FGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
            P + GT G        G P +PG PGE   VG G  PG P PP
Sbjct: 1121 PGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPP 1163



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 6   PGDR-----PVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG---PRPPAL 56
           PG++     P ++  P   G  G++  G P  PG PGE RG     GP G   P PP L
Sbjct: 367 PGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGE-RGQKGDEGPPGISIPGPPGL 424



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 10  PVMRCSPSWSGTSGSSDF-GFPVDPGNPGE-GRGVGPGH--GPGGPRPPAL 56
           P  R  P   G +G     G P DPG PGE GR    G     G P PP L
Sbjct: 294 PGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGL 344



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/37 (43%), Positives = 16/37 (43%)

Query: 20   GTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
            G  G   FG P  PG PG     G G  PG P  P L
Sbjct: 1182 GEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGL 1218



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 6    PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRS 58
            PGD P     P + G  G   D G P  PG  G     GP    G P PP   S
Sbjct: 1405 PGD-PGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSS 1457



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 10/51 (19%)

Query: 16  PSWSGTSG-SSDFGFPVDPGNPGEG---------RGVGPGHGPGGPRPPAL 56
           P + G  G   D GFP  PG PG             VGP   PG   PP L
Sbjct: 765 PGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL 815



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 6    PGDRPVMRCSPSWSGTSGS-SDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
            P   P +   P   G  GS  D G P  PG PG     G    PG P PP
Sbjct: 1081 PKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP 1130



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 16  PSWSGTSGSSDF---GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           P + G  G   F   G P  PG PG    +GP    G P PP
Sbjct: 742 PGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPP 783



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 16   PSWSGTSGSSDF-GFPVDPGNPG-EGR-----GVGPGHGPGGPRPPAL 56
            P   G SG   + G P DPG PG  G+       GP   PG P  P L
Sbjct: 972  PGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGL 1019



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/29 (48%), Positives = 14/29 (48%)

Query: 28  GFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
           G P  PGNPG    VG    PG P  P L
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGL 691



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 16  PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           P   G  GS   GFP   G  G+    GP   PG P  P
Sbjct: 499 PGLPGPPGS--LGFPGQKGEKGQAGATGPKGLPGIPGAP 535



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGE----------GRGVGPGHG-PGGPRP 53
           PG        P   G  G   D G P DPG PG+          G    PG G PG P P
Sbjct: 655 PGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGP 714



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 16  PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG 49
           P  +GT G    GFP  PG PG     GP   PG
Sbjct: 122 PGCNGTKGER--GFPGSPGFPGLQGPPGPPGIPG 153



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 20  GTSGSSDFGFPVDPGNPGEGRGVG----PGHGPGGP 51
           G +   + G P +PG PG    +G    PG GP GP
Sbjct: 595 GITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGP 630



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 16   PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
            P   G  G    G P  PGNPG    VG    PG P  P  +
Sbjct: 1076 PGLPGPKGEP--GLPGYPGNPGIKGSVGDPGLPGLPGTPGAK 1115


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
            sapiens]
          Length = 1688

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 16   PSWSGTSGSSD----FGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
            P + GT G        G P +PG PGE   VG G  PG P PP
Sbjct: 1121 PGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPP 1163



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 6   PGDR-----PVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG---PRPPAL 56
           PG++     P ++  P   G  G++  G P  PG PGE RG     GP G   P PP L
Sbjct: 367 PGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGE-RGQKGDEGPPGISIPGPPGL 424



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 10  PVMRCSPSWSGTSGSSDF-GFPVDPGNPGE-GRGVGPGH--GPGGPRPPAL 56
           P  R  P   G +G     G P DPG PGE GR    G     G P PP L
Sbjct: 294 PGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGL 344



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/37 (43%), Positives = 16/37 (43%)

Query: 20   GTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
            G  G   FG P  PG PG     G G  PG P  P L
Sbjct: 1182 GEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGL 1218



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 6    PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRS 58
            PGD P     P + G  G   D G P  PG  G     GP    G P PP   S
Sbjct: 1408 PGD-PGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSS 1460



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 10/51 (19%)

Query: 16  PSWSGTSG-SSDFGFPVDPGNPGEG---------RGVGPGHGPGGPRPPAL 56
           P + G  G   D GFP  PG PG             VGP   PG   PP L
Sbjct: 765 PGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL 815



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 6    PGDRPVMRCSPSWSGTSGS-SDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
            P   P +   P   G  GS  D G P  PG PG     G    PG P PP
Sbjct: 1081 PKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP 1130



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 16  PSWSGTSGSSDF---GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           P + G  G   F   G P  PG PG    +GP    G P PP
Sbjct: 742 PGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPP 783



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 16   PSWSGTSGSSDF-GFPVDPGNPG-EGR-----GVGPGHGPGGPRPPAL 56
            P   G SG   + G P DPG PG  G+       GP   PG P  P L
Sbjct: 972  PGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGL 1019



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/29 (48%), Positives = 14/29 (48%)

Query: 28  GFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
           G P  PGNPG    VG    PG P  P L
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGL 691



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 16  PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           P   G  GS   GFP   G  G+    GP   PG P  P
Sbjct: 499 PGLPGPPGS--LGFPGQKGEKGQAGATGPKGLPGIPGAP 535



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 6   PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGE----------GRGVGPGHG-PGGPRP 53
           PG        P   G  G   D G P DPG PG+          G    PG G PG P P
Sbjct: 655 PGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGP 714



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 16  PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG 49
           P  +GT G    GFP  PG PG     GP   PG
Sbjct: 122 PGCNGTKGER--GFPGSPGFPGLQGPPGPPGIPG 153



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 20  GTSGSSDFGFPVDPGNPGEGRGVG----PGHGPGGP 51
           G +   + G P +PG PG    +G    PG GP GP
Sbjct: 595 GITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGP 630



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 16   PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
            P   G  G    G P  PGNPG    VG    PG P  P  +
Sbjct: 1076 PGLPGPKGEP--GLPGYPGNPGIKGSVGDPGLPGLPGTPGAK 1115


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 6   PGD-RPVMRCSPSWSGTSGSS-DFGFPVD-----PGNPGEGRGVGPGHGPGGPRPP 54
           PG  RP +R +P W G  GS  + G P       PG+PG     G    PG P PP
Sbjct: 383 PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPP 438



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 19  SGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG-GPR 52
           SG  G  D G P DPG+PG     GP   PG GP+
Sbjct: 589 SGEKG--DQGPPGDPGSPGSPGPAGPAGPPGYGPQ 621



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 15  SPSWSGTSGSSDF-------GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           +P + G  G+S         G P  PG PG     GP   PG P PP
Sbjct: 754 TPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPP 800



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 15   SPSWSGTSGSSDF-GFPV---DPGNPGEGRGVGPGHGPGGPR-PPALR 57
            +P   G  G   F GFP    + GNPG    +GP  GP GP+ PP +R
Sbjct: 1299 TPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-PGPIGPKGPPGVR 1345



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 28 GFPVDPGNPGEGRGVGPG--HGPGGPR 52
          GFP  PG+PG+    GP    GP GP+
Sbjct: 52 GFPGPPGSPGQKGFTGPEGLPGPQGPK 78



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 5   RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           +PG  P  +  P+ +   G    GFP + GN GE   +G    PG P  P
Sbjct: 734 KPG-LPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTP 782



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 5    RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
            RPG  P     P   G  G    G    PG PG     GP   PG P  P L
Sbjct: 1063 RPGP-PGPTGDPGLPGDMGKK--GEMGQPGPPGHLGPAGPEGAPGSPGSPGL 1111


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 6   PGD-RPVMRCSPSWSGTSGSS-DFGFPVD-----PGNPGEGRGVGPGHGPGGPRPP 54
           PG  RP +R +P W G  GS  + G P       PG+PG     G    PG P PP
Sbjct: 383 PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPP 438



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 19  SGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG-GPR 52
           SG  G  D G P DPG+PG     GP   PG GP+
Sbjct: 589 SGEKG--DQGPPGDPGSPGSPGPAGPAGPPGYGPQ 621



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 15  SPSWSGTSGSSDF-------GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           +P + G  G+S         G P  PG PG     GP   PG P PP
Sbjct: 754 TPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPP 800



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 15   SPSWSGTSGSSDF-GFPV---DPGNPGEGRGVGPGHGPGGPR-PPALR 57
            +P   G  G   F GFP    + GNPG    +GP  GP GP+ PP +R
Sbjct: 1299 TPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-PGPIGPKGPPGVR 1345



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 28 GFPVDPGNPGEGRGVGPG--HGPGGPR 52
          GFP  PG+PG+    GP    GP GP+
Sbjct: 52 GFPGPPGSPGQKGFTGPEGLPGPQGPK 78



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 5   RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           +PG  P  +  P+ +   G    GFP + GN GE   +G    PG P  P
Sbjct: 734 KPG-LPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTP 782



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 5    RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
            RPG  P     P   G  G    G    PG PG     GP   PG P  P L
Sbjct: 1063 RPGP-PGPTGDPGLPGDMGKK--GEMGQPGPPGHLGPAGPEGAPGSPGSPGL 1111


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1637

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 6   PGD-RPVMRCSPSWSGTSGSS-DFGFPVD-----PGNPGEGRGVGPGHGPGGPRPP 54
           PG  RP +R +P W G  GS  + G P       PG+PG     G    PG P PP
Sbjct: 383 PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPP 438



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 19  SGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG-GPR 52
           SG  G  D G P DPG+PG     GP   PG GP+
Sbjct: 589 SGEKG--DQGPPGDPGSPGSPGPAGPAGPPGYGPQ 621



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 15  SPSWSGTSGSSDF-------GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           +P + G  G+S         G P  PG PG     GP   PG P PP
Sbjct: 754 TPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPP 800



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 15   SPSWSGTSGSSDF-GFPV---DPGNPGEGRGVGPGHGPGGPR-PPALR 57
            +P   G  G   F GFP    + GNPG    +GP  GP GP+ PP +R
Sbjct: 1299 TPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-PGPIGPKGPPGVR 1345



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 28 GFPVDPGNPGEGRGVGPG--HGPGGPR 52
          GFP  PG+PG+    GP    GP GP+
Sbjct: 52 GFPGPPGSPGQKGFTGPEGLPGPQGPK 78



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 5   RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           +PG  P  +  P+ +   G    GFP + GN GE   +G    PG P  P
Sbjct: 734 KPG-LPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTP 782



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 5    RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
            RPG  P     P   G  G    G    PG PG     GP   PG P  P L
Sbjct: 1063 RPGP-PGPTGDPGLPGDMGKK--GEMGQPGPPGHLGPAGPEGAPGSPGSPGL 1111


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1670

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 6   PGD-RPVMRCSPSWSGTSGSS-DFGFPVD-----PGNPGEGRGVGPGHGPGGPRPP 54
           PG  RP +R +P W G  GS  + G P       PG+PG     G    PG P PP
Sbjct: 383 PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPP 438



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 19  SGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG-GPR 52
           SG  G  D G P DPG+PG     GP   PG GP+
Sbjct: 589 SGEKG--DQGPPGDPGSPGSPGPAGPAGPPGYGPQ 621



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 15  SPSWSGTSGSSDF-------GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           +P + G  G+S         G P  PG PG     GP   PG P PP
Sbjct: 754 TPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPP 800



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 15   SPSWSGTSGSSDF-GFPV---DPGNPGEGRGVGPGHGPGGPR-PPALR 57
            +P   G  G   F GFP    + GNPG    +GP  GP GP+ PP +R
Sbjct: 1299 TPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-PGPIGPKGPPGVR 1345



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 28 GFPVDPGNPGEGRGVGPG--HGPGGPR 52
          GFP  PG+PG+    GP    GP GP+
Sbjct: 52 GFPGPPGSPGQKGFTGPEGLPGPQGPK 78



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 5   RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           +PG  P  +  P+ +   G    GFP + GN GE   +G    PG P  P
Sbjct: 734 KPG-LPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTP 782



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 5    RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
            RPG  P     P   G  G    G    PG PG     GP   PG P  P L
Sbjct: 1063 RPGP-PGPTGDPGLPGDMGKK--GEMGQPGPPGHLGPAGPEGAPGSPGSPGL 1111


>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
          Length = 657

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 2   RAERPGDRPVMRCSPSWSGTSGSSDF-GFPVD------PGNPGEGRGVGPGHGPGGPRPP 54
           R E P   P   C P + G  G+  F GFP        PG+PG    +G    PG P P 
Sbjct: 107 RREAPKTSPGCNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQ 166

Query: 55  ALRSHR 60
             +  +
Sbjct: 167 GQKGEK 172


>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
          Length = 660

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 2   RAERPGDRPVMRCSPSWSGTSGSSDF-GFPVD------PGNPGEGRGVGPGHGPGGPRPP 54
           R E P   P   C P + G  G+  F GFP        PG+PG    +G    PG P P 
Sbjct: 107 RREAPKTSPGCNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQ 166

Query: 55  ALRSHR 60
             +  +
Sbjct: 167 GQKGEK 172


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 21/63 (33%), Positives = 22/63 (34%)

Query: 28  GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEEAGERRMDRTQAREVRPETG 87
           GF   PG PGE    GP    G P PP          +    GER     Q     P T 
Sbjct: 200 GFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTA 259

Query: 88  SLP 90
            LP
Sbjct: 260 GLP 262



 Score = 28.9 bits (63), Expect = 0.90
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 28   GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
            G P  PG+PGE +G     GP GPR P
Sbjct: 1118 GPPGPPGSPGE-QGPSGASGPAGPRGP 1143



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 6    PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
            P   P    +P   G +G     G P   G  G+   VGP   PG P PP
Sbjct: 1140 PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPP 1189



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 28   GFPVDPGNPGEGRGVGPG-----HGPGGPR-PPALR----SHRRSHLRGEEAGERRMDRT 77
            GFP  PG  GE    GP       GP GP  PP L        R    G E    R    
Sbjct: 971  GFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSP 1030

Query: 78   QAREVRPETG 87
             A+  R ETG
Sbjct: 1031 GAKGDRGETG 1040



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 3   AERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
           A RPG+  +    P   G +GS   G P   G  G     G    PG P PP  R
Sbjct: 526 AGRPGEAGL----PGAKGLTGSP--GSPGPDGKTGPPGPAGQDGRPGPPGPPGAR 574


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 30 PVDPGNPGEGRGVGPGHGPGGPRPPA 55
          P+ PG  G G G GPG GPG  +PP+
Sbjct: 15 PLPPG--GAGPGPGPGPGPGAGKPPS 38



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 33  PGNPGEGRGVGPGHGPGG------PRPPALRSHRRSHLRGEEAGERRMDRTQAREVRPE 85
           P  PG G G GPG GPG       P+ P L + R +    ++A          RE R +
Sbjct: 58  PPVPGPGPGPGPGPGPGSTSRRLDPKEP-LGNQRAASPTPKQASATTPGHESPRETRAQ 115


>gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens]
          Length = 485

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 15  SPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPA 55
           S S SG    S  G    PG PG G G GPGHG G    PA
Sbjct: 157 SGSGSGPGCGSVPGSGSGPG-PGSGPGSGPGHGSGSHPGPA 196


>gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens]
          Length = 501

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 15  SPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPA 55
           S S SG    S  G    PG PG G G GPGHG G    PA
Sbjct: 157 SGSGSGPGCGSVPGSGSGPG-PGSGPGSGPGHGSGSHPGPA 196


>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
          Length = 1257

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 13  RCSPSWSGTSGSSDFGFPVDPGN---PGEGRGVGPGHGPGG 50
           +CS    GT+G    G    PG     G G+G G GHG GG
Sbjct: 544 QCSRDGQGTAGGHGSGGGQRPGGGHGSGGGQGPGDGHGSGG 584



 Score = 25.4 bits (54), Expect = 10.0
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 13  RCSPSWSGTSGSSDFGFPVDPGNP--GEGRGVGPGHGPGGPRPP 54
           +CS    G+ G          GN    +G+G   GHG GG + P
Sbjct: 521 QCSGEGQGSRGGQGSNGQGSGGNQCSRDGQGTAGGHGSGGGQRP 564


>gi|64084766 fidgetin [Homo sapiens]
          Length = 759

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 6   PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
           P   P     P ++GTS  S + +P     P     VG G+ PGG  PP
Sbjct: 224 PPPPPPPALVPGYNGTSNLSSYSYPSASYPP--QTAVGSGYSPGGAPPP 270


>gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo
          sapiens]
          Length = 454

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 22/93 (23%)

Query: 6  PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRS------- 58
          PG +P  + +P   G            P  P +G+G  P  GPG P P A ++       
Sbjct: 3  PGQQPPPQPAPQGQGQP----------PSQPPQGQG--PPSGPGQPAPAATQAAPQAPPA 50

Query: 59 -HRRSHLRGEEAGERRMDRTQAREVRPETGSLP 90
           H+  H+RG+   E  ++      + P+T ++P
Sbjct: 51 GHQIVHVRGD--SETDLEALFNAVMNPKTANVP 81


>gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo
          sapiens]
          Length = 504

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 22/93 (23%)

Query: 6  PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRS------- 58
          PG +P  + +P   G            P  P +G+G  P  GPG P P A ++       
Sbjct: 3  PGQQPPPQPAPQGQGQP----------PSQPPQGQG--PPSGPGQPAPAATQAAPQAPPA 50

Query: 59 -HRRSHLRGEEAGERRMDRTQAREVRPETGSLP 90
           H+  H+RG+   E  ++      + P+T ++P
Sbjct: 51 GHQIVHVRGD--SETDLEALFNAVMNPKTANVP 81


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,834,217
Number of Sequences: 37866
Number of extensions: 391393
Number of successful extensions: 3746
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 257
Number of HSP's that attempted gapping in prelim test: 2154
Number of HSP's gapped (non-prelim): 1708
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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