Guide to the Human Genome
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Name: LOC100292859 Sequence: fasta or formatted (90aa) NCBI GI: 239756535
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4          4           1
 C cysteine            1.1          1           1
 D aspartate           4.4          4           1
 E glutamate           7.8          7           2
 F phenylalanine       2.2          2           1
 G glycine            17.8         16           2
 H histidine           3.3          3           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             3.3          3           1
 M methionine          3.3          3           1
 N asparagine          1.1          1           1
 P proline            14.4         13           2
 Q glutamine           1.1          1           1
 R arginine           16.7         15           2
 S serine             10.0          9           2
 T threonine           3.3          3           1
 V valine              4.4          4           1
 W tryptophan          1.1          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289031          1.000   PREDICTED: hypothetical protein 
LOC100289031          1.000   PREDICTED: hypothetical protein XP_002343473 
TNRC18                0.058   trinucleotide repeat containing 18 
IL17RC                0.053   interleukin 17 receptor C isoform 1 precursor 
IL17RC                0.053   interleukin 17 receptor C isoform 3 precursor 
IL17RC                0.053   interleukin 17 receptor C isoform 2 precursor 
TTBK1                 0.047   tau tubulin kinase 1 
WDR33                 0.047   WD repeat domain 33 isoform 1 
COL2A1                0.041   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.041   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL29A1               0.041   collagen, type XXIX, alpha 1 
HOXD9                 0.041   homeobox D9 
COL4A5                0.041   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.041   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.041   type IV collagen alpha 5 isoform 3 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 1 precursor 
COL13A1               0.041   alpha 1 type XIII collagen isoform 17 
COL13A1               0.041   alpha 1 type XIII collagen isoform 16 
COL1A1                0.041   alpha 1 type I collagen preproprotein 
BSN                   0.041   bassoon protein 
SPAG8                 0.041   sperm associated antigen 8 isoform 1 
SPAG8                 0.041   sperm associated antigen 8 isoform 2 
IRS4                  0.041   insulin receptor substrate 4 
FIGN                  0.035   fidgetin 
YAP1                  0.035   Yes-associated protein 1, 65kDa isoform 2 
YAP1                  0.035   Yes-associated protein 1, 65kDa isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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