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Search of human proteins with 239756047
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3
[Homo sapiens]
(471 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [... 1001 0.0
gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens] 1001 0.0
gi|116295254 heparan sulfate 6-O-sulfotransferase 2 isoform S [H... 521 e-148
gi|116295256 heparan sulfate 6-O-sulfotransferase 2 isoform L [H... 507 e-143
gi|148747866 heparan sulfate 6-O-sulfotransferase 1 [Homo sapiens] 504 e-143
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 51 3e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 50 4e-06
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 49 1e-05
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 48 2e-05
gi|7661690 coiled-coil domain containing 9 [Homo sapiens] 47 4e-05
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 47 5e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 46 8e-05
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 45 1e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 45 1e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 45 1e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 45 1e-04
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 45 1e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 45 1e-04
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 45 2e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 44 4e-04
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 43 5e-04
gi|50511941 EMI domain containing 1 [Homo sapiens] 43 5e-04
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] 43 7e-04
gi|18079216 CASK interacting protein 1 [Homo sapiens] 42 0.001
gi|5730045 solute carrier family 16, member 2 [Homo sapiens] 42 0.001
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 42 0.001
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 42 0.001
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 42 0.001
gi|122937247 unc-13 homolog A [Homo sapiens] 42 0.001
gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens] 42 0.001
>gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3
[Homo sapiens]
Length = 471
Score = 1001 bits (2588), Expect = 0.0
Identities = 471/471 (100%), Positives = 471/471 (100%)
Query: 1 MDERFNKWLLTPVLTLLFVVIMYQYVSPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQA 60
MDERFNKWLLTPVLTLLFVVIMYQYVSPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQA
Sbjct: 1 MDERFNKWLLTPVLTLLFVVIMYQYVSPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQA 60
Query: 61 PPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPENGSL 120
PPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPENGSL
Sbjct: 61 PPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPENGSL 120
Query: 121 PRFVPRFNFSLKDLTRFVDFNIKGRDVIVFLHIQKTGGTTFGRHLVKNIRLEQPCSCKAG 180
PRFVPRFNFSLKDLTRFVDFNIKGRDVIVFLHIQKTGGTTFGRHLVKNIRLEQPCSCKAG
Sbjct: 121 PRFVPRFNFSLKDLTRFVDFNIKGRDVIVFLHIQKTGGTTFGRHLVKNIRLEQPCSCKAG 180
Query: 181 QKKCTCHRPGKKETWLFSRFSTGWSCGLHADWTELTNCVPAIMEKKDCPRNHSHTRNFYY 240
QKKCTCHRPGKKETWLFSRFSTGWSCGLHADWTELTNCVPAIMEKKDCPRNHSHTRNFYY
Sbjct: 181 QKKCTCHRPGKKETWLFSRFSTGWSCGLHADWTELTNCVPAIMEKKDCPRNHSHTRNFYY 240
Query: 241 ITMLRDPVSRYLSEWKHVQRGATWKTSLHMCDGRSPTPDELPTCYPGDDWSGVSLREFMD 300
ITMLRDPVSRYLSEWKHVQRGATWKTSLHMCDGRSPTPDELPTCYPGDDWSGVSLREFMD
Sbjct: 241 ITMLRDPVSRYLSEWKHVQRGATWKTSLHMCDGRSPTPDELPTCYPGDDWSGVSLREFMD 300
Query: 301 CTYNLANNRQVRMLADLSLVGCYNLTFMNESERNTILLQSAKNNLKNMAFFGLTEFQRKT 360
CTYNLANNRQVRMLADLSLVGCYNLTFMNESERNTILLQSAKNNLKNMAFFGLTEFQRKT
Sbjct: 301 CTYNLANNRQVRMLADLSLVGCYNLTFMNESERNTILLQSAKNNLKNMAFFGLTEFQRKT 360
Query: 361 QFLFERTFNLKFISPFTQFNITRASNVEINEGARQRIEDLNFLDMQLYEYAKDLFQQRYH 420
QFLFERTFNLKFISPFTQFNITRASNVEINEGARQRIEDLNFLDMQLYEYAKDLFQQRYH
Sbjct: 361 QFLFERTFNLKFISPFTQFNITRASNVEINEGARQRIEDLNFLDMQLYEYAKDLFQQRYH 420
Query: 421 HTKQLEHQRDRQKRREERRLQREHRDHQWPKEDGAAEGTVTEDYNSQVVRW 471
HTKQLEHQRDRQKRREERRLQREHRDHQWPKEDGAAEGTVTEDYNSQVVRW
Sbjct: 421 HTKQLEHQRDRQKRREERRLQREHRDHQWPKEDGAAEGTVTEDYNSQVVRW 471
>gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]
Length = 471
Score = 1001 bits (2588), Expect = 0.0
Identities = 471/471 (100%), Positives = 471/471 (100%)
Query: 1 MDERFNKWLLTPVLTLLFVVIMYQYVSPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQA 60
MDERFNKWLLTPVLTLLFVVIMYQYVSPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQA
Sbjct: 1 MDERFNKWLLTPVLTLLFVVIMYQYVSPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQA 60
Query: 61 PPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPENGSL 120
PPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPENGSL
Sbjct: 61 PPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPENGSL 120
Query: 121 PRFVPRFNFSLKDLTRFVDFNIKGRDVIVFLHIQKTGGTTFGRHLVKNIRLEQPCSCKAG 180
PRFVPRFNFSLKDLTRFVDFNIKGRDVIVFLHIQKTGGTTFGRHLVKNIRLEQPCSCKAG
Sbjct: 121 PRFVPRFNFSLKDLTRFVDFNIKGRDVIVFLHIQKTGGTTFGRHLVKNIRLEQPCSCKAG 180
Query: 181 QKKCTCHRPGKKETWLFSRFSTGWSCGLHADWTELTNCVPAIMEKKDCPRNHSHTRNFYY 240
QKKCTCHRPGKKETWLFSRFSTGWSCGLHADWTELTNCVPAIMEKKDCPRNHSHTRNFYY
Sbjct: 181 QKKCTCHRPGKKETWLFSRFSTGWSCGLHADWTELTNCVPAIMEKKDCPRNHSHTRNFYY 240
Query: 241 ITMLRDPVSRYLSEWKHVQRGATWKTSLHMCDGRSPTPDELPTCYPGDDWSGVSLREFMD 300
ITMLRDPVSRYLSEWKHVQRGATWKTSLHMCDGRSPTPDELPTCYPGDDWSGVSLREFMD
Sbjct: 241 ITMLRDPVSRYLSEWKHVQRGATWKTSLHMCDGRSPTPDELPTCYPGDDWSGVSLREFMD 300
Query: 301 CTYNLANNRQVRMLADLSLVGCYNLTFMNESERNTILLQSAKNNLKNMAFFGLTEFQRKT 360
CTYNLANNRQVRMLADLSLVGCYNLTFMNESERNTILLQSAKNNLKNMAFFGLTEFQRKT
Sbjct: 301 CTYNLANNRQVRMLADLSLVGCYNLTFMNESERNTILLQSAKNNLKNMAFFGLTEFQRKT 360
Query: 361 QFLFERTFNLKFISPFTQFNITRASNVEINEGARQRIEDLNFLDMQLYEYAKDLFQQRYH 420
QFLFERTFNLKFISPFTQFNITRASNVEINEGARQRIEDLNFLDMQLYEYAKDLFQQRYH
Sbjct: 361 QFLFERTFNLKFISPFTQFNITRASNVEINEGARQRIEDLNFLDMQLYEYAKDLFQQRYH 420
Query: 421 HTKQLEHQRDRQKRREERRLQREHRDHQWPKEDGAAEGTVTEDYNSQVVRW 471
HTKQLEHQRDRQKRREERRLQREHRDHQWPKEDGAAEGTVTEDYNSQVVRW
Sbjct: 421 HTKQLEHQRDRQKRREERRLQREHRDHQWPKEDGAAEGTVTEDYNSQVVRW 471
>gi|116295254 heparan sulfate 6-O-sulfotransferase 2 isoform S [Homo
sapiens]
Length = 605
Score = 521 bits (1342), Expect = e-148
Identities = 242/330 (73%), Positives = 285/330 (86%), Gaps = 1/330 (0%)
Query: 110 PDPEAPENGSLPRFVPRFNFSLKDLTRFVDFNIKGRDVIVFLHIQKTGGTTFGRHLVKNI 169
PDP E+ S RFVPR+NF+ DL R VDF+IKG D+IVFLHIQKTGGTTFGRHLV+NI
Sbjct: 191 PDPYRSEDESSARFVPRYNFTRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNI 250
Query: 170 RLEQPCSCKAGQKKCTCHRPGKKETWLFSRFSTGWSCGLHADWTELTNCVPAIMEKKDCP 229
+LEQPC C+ GQKKCTCHRPGK+ETWLFSRFSTGWSCGLHADWTELT+CVP++++ K
Sbjct: 251 QLEQPCECRVGQKKCTCHRPGKRETWLFSRFSTGWSCGLHADWTELTSCVPSVVDGKRDA 310
Query: 230 RNHSHTRNFYYITMLRDPVSRYLSEWKHVQRGATWKTSLHMCDGRSPTPDELPTCYPGDD 289
R +RNF+YIT+LRDPVSRYLSEW+HVQRGATWK SLH+CDGR PT +ELP+CY GDD
Sbjct: 311 RLRP-SRNFHYITILRDPVSRYLSEWRHVQRGATWKASLHVCDGRPPTSEELPSCYTGDD 369
Query: 290 WSGVSLREFMDCTYNLANNRQVRMLADLSLVGCYNLTFMNESERNTILLQSAKNNLKNMA 349
WSG L+EFMDC YNLANNRQVRML+DL+LVGCYNL+ M E +RN +LL+SAK+NLK+MA
Sbjct: 370 WSGCPLKEFMDCPYNLANNRQVRMLSDLTLVGCYNLSVMPEKQRNKVLLESAKSNLKHMA 429
Query: 350 FFGLTEFQRKTQFLFERTFNLKFISPFTQFNITRASNVEINEGARQRIEDLNFLDMQLYE 409
FFGLTEFQRKTQ+LFE+TFN+ FISPFTQ+N TRAS+VEINE ++RIE LNFLDM+LY
Sbjct: 430 FFGLTEFQRKTQYLFEKTFNMNFISPFTQYNTTRASSVEINEEIQKRIEGLNFLDMELYS 489
Query: 410 YAKDLFQQRYHHTKQLEHQRDRQKRREERR 439
YAKDLF QRY +Q EHQ R+KR+E+R+
Sbjct: 490 YAKDLFLQRYQFMRQKEHQEARRKRQEQRK 519
Score = 33.5 bits (75), Expect = 0.43
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1 MDERFNKWLLTPVLTLLFVVIMYQYVSP 28
MDE+ NK LL V+ LF VI+ QYV P
Sbjct: 147 MDEKSNKLLLALVMLFLFAVIVLQYVCP 174
>gi|116295256 heparan sulfate 6-O-sulfotransferase 2 isoform L [Homo
sapiens]
Length = 645
Score = 507 bits (1305), Expect = e-143
Identities = 244/369 (66%), Positives = 289/369 (78%), Gaps = 39/369 (10%)
Query: 110 PDPEAPENGSLPRFVPRFNFSLKDLTRFVDFNIKGRDVIVFLHIQKTGGTTFGRHLVKNI 169
PDP E+ S RFVPR+NF+ DL R VDF+IKG D+IVFLHIQKTGGTTFGRHLV+NI
Sbjct: 191 PDPYRSEDESSARFVPRYNFTRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNI 250
Query: 170 RLEQPCSCKAGQKKCTCHRPGKKETWLFSRFSTGWSCGLHADWTELTNCVPAIME----- 224
+LEQPC C+ GQKKCTCHRPGK+ETWLFSRFSTGWSCGLHADWTELT+CVP++++
Sbjct: 251 QLEQPCECRVGQKKCTCHRPGKRETWLFSRFSTGWSCGLHADWTELTSCVPSVVDGKRDA 310
Query: 225 -------------------KKDCP--------------RNHSHT-RNFYYITMLRDPVSR 250
K+ P RN S + +NF+YIT+LRDPVSR
Sbjct: 311 RLRPSRWRIFQILDAASKDKRGSPNTNAGANSPSSTKTRNTSKSGKNFHYITILRDPVSR 370
Query: 251 YLSEWKHVQRGATWKTSLHMCDGRSPTPDELPTCYPGDDWSGVSLREFMDCTYNLANNRQ 310
YLSEW+HVQRGATWK SLH+CDGR PT +ELP+CY GDDWSG L+EFMDC YNLANNRQ
Sbjct: 371 YLSEWRHVQRGATWKASLHVCDGRPPTSEELPSCYTGDDWSGCPLKEFMDCPYNLANNRQ 430
Query: 311 VRMLADLSLVGCYNLTFMNESERNTILLQSAKNNLKNMAFFGLTEFQRKTQFLFERTFNL 370
VRML+DL+LVGCYNL+ M E +RN +LL+SAK+NLK+MAFFGLTEFQRKTQ+LFE+TFN+
Sbjct: 431 VRMLSDLTLVGCYNLSVMPEKQRNKVLLESAKSNLKHMAFFGLTEFQRKTQYLFEKTFNM 490
Query: 371 KFISPFTQFNITRASNVEINEGARQRIEDLNFLDMQLYEYAKDLFQQRYHHTKQLEHQRD 430
FISPFTQ+N TRAS+VEINE ++RIE LNFLDM+LY YAKDLF QRY +Q EHQ
Sbjct: 491 NFISPFTQYNTTRASSVEINEEIQKRIEGLNFLDMELYSYAKDLFLQRYQFMRQKEHQEA 550
Query: 431 RQKRREERR 439
R+KR+E+R+
Sbjct: 551 RRKRQEQRK 559
Score = 33.5 bits (75), Expect = 0.43
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1 MDERFNKWLLTPVLTLLFVVIMYQYVSP 28
MDE+ NK LL V+ LF VI+ QYV P
Sbjct: 147 MDEKSNKLLLALVMLFLFAVIVLQYVCP 174
>gi|148747866 heparan sulfate 6-O-sulfotransferase 1 [Homo sapiens]
Length = 411
Score = 504 bits (1297), Expect = e-143
Identities = 238/353 (67%), Positives = 286/353 (81%), Gaps = 5/353 (1%)
Query: 121 PRFVPRFNFSLKDLTRFVDFNIKGRDVIVFLHIQKTGGTTFGRHLVKNIRLEQPCSCKAG 180
P + ++ F +++L R + F++KG DVIVFLHIQKTGGTTFGRHLV+N+RLE PC C+ G
Sbjct: 62 PHYEKKYYFPVRELERSLRFDMKGDDVIVFLHIQKTGGTTFGRHLVQNVRLEVPCDCRPG 121
Query: 181 QKKCTCHRPGKKETWLFSRFSTGWSCGLHADWTELTNCVPAIMEKKDCPRNHSHTRNFYY 240
QKKCTC+RP ++ETWLFSRFSTGWSCGLHADWTELTNCVP +++++D + R FYY
Sbjct: 122 QKKCTCYRPNRRETWLFSRFSTGWSCGLHADWTELTNCVPGVLDRRDSAALRT-PRKFYY 180
Query: 241 ITMLRDPVSRYLSEWKHVQRGATWKTSLHMCDGRSPTPDELPTCYPGDDWSGVSLREFMD 300
IT+LRDPVSRYLSEW+HVQRGATWKTSLHMCDGR+PTP+ELP CY G DWSG +L+EFMD
Sbjct: 181 ITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQEFMD 240
Query: 301 CTYNLANNRQVRMLADLSLVGCYNLTFMNESERNTILLQSAKNNLKNMAFFGLTEFQRKT 360
C YNLANNRQVRMLADLSLVGCYNL+F+ E +R +LL+SAK NL+ MAFFGLTEFQRKT
Sbjct: 241 CPYNLANNRQVRMLADLSLVGCYNLSFIPEGKRAQLLLESAKKNLRGMAFFGLTEFQRKT 300
Query: 361 QFLFERTFNLKFISPFTQFNITRASNVEINEGARQRIEDLNFLDMQLYEYAKDLFQQRYH 420
Q+LFERTFNLKFI PF Q+N TRA VE++E +RIE+LN LDMQLY+YAKDLFQQRY
Sbjct: 301 QYLFERTFNLKFIRPFMQYNSTRAGGVEVDEDTIRRIEELNDLDMQLYDYAKDLFQQRYQ 360
Query: 421 HTKQLEHQRDRQKRREERRLQREHRDHQWPKEDGAAEGTV-TEDYNSQVV-RW 471
+ +QLE + R + REER L R P+ED G V TEDY S ++ +W
Sbjct: 361 YKRQLERREQRLRSREERLLHR--AKEALPREDADEPGRVPTEDYMSHIIEKW 411
Score = 29.3 bits (64), Expect = 8.1
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 1 MDERFNKWLLTPVLTLLFVVIMYQYVSPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQA 60
M ER +K++L ++ F++I+YQY P + P + P P ++
Sbjct: 11 MVERASKFVLVVAGSVCFMLILYQYAGPGLSLGAPGGRAPPDDLDLFPTPDPHYEKKYYF 70
Query: 61 PPEEWER 67
P E ER
Sbjct: 71 PVRELER 77
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP--RGAAAPEEEDEEP 95
G QP+ GPP PG + Q PP + +PQ PPPP G P+GP +G + + P
Sbjct: 227 GNQPQ----GPPPPPG---KPQGPPPQGGNKPQGPPPP-GKPQGPPAQGGSKSQSARSPP 278
Query: 96 GDPREGEEEEEEDEPDPEAPENGSLPR 122
G P +G ++E + P P G P+
Sbjct: 279 GKP-QGPPQQEGNNPQGPPPPAGGNPQ 304
Score = 47.4 bits (111), Expect = 3e-05
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEP-- 95
G QP+ GPP PG + Q PP + ++PQ PPPP G P+GP + P
Sbjct: 166 GNQPQ----GPPPPPG---KPQGPPPQGGKKPQGPPPP-GKPQGPPPQGDKSRSSQSPPG 217
Query: 96 ---GDPREGEEEEEEDEPDPEAPE 116
G P +G + + P P P+
Sbjct: 218 KPQGPPPQGGNQPQGPPPPPGKPQ 241
Score = 47.0 bits (110), Expect = 4e-05
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPP---PRGPPEGPRGAAAPEEEDEE 94
G QP+ GPP PG + Q PP + RPQ PPP P+GPP + +P +
Sbjct: 105 GNQPQ----GPPPPPG---KPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 157
Query: 95 P-GDPREGEEEEEEDEPDPEAPE 116
P G P +G + + P P P+
Sbjct: 158 PQGPPPQGGNQPQGPPPPPGKPQ 180
Score = 46.2 bits (108), Expect = 6e-05
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 38 GEQPRAGEA--GPPAVPGPARRAQAPPEEWERRPQLPPP---PRGPPEGPRGAAAPEEED 92
G P+ G GPP PG + Q PP + +PQ PPP P+GPP + +P
Sbjct: 38 GPSPQGGNKPQGPPPPPG---KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPP 94
Query: 93 EEP-GDPREGEEEEEEDEPDPEAPE 116
+P G P +G + + P P P+
Sbjct: 95 GKPQGPPPQGGNQPQGPPPPPGKPQ 119
Score = 45.1 bits (105), Expect = 1e-04
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 38 GEQPRAGEAGPP-------AVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP-----RGA 85
G P GPP + P + Q PP + +PQ PPPP G P+GP +
Sbjct: 131 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKP 190
Query: 86 AAPEEEDEEPGDPREGEEEEEED----EPDPEAPENGSLPRFVP 125
P + G P +G++ +P P+ G+ P+ P
Sbjct: 191 QGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPP 234
Score = 43.5 bits (101), Expect = 4e-04
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 38 GEQPRAGEAGPP-------AVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP-----RGA 85
G P GPP + P + Q PP + +PQ PPPP G P+GP
Sbjct: 70 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRP 129
Query: 86 AAPEEEDEEPGDPREGEEEEE----EDEPDPEAPENGSLPRFVP 125
P + G P +G++ +P P+ G+ P+ P
Sbjct: 130 QGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 173
Score = 43.1 bits (100), Expect = 5e-04
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 38 GEQPRAGEAGPP-------AVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEE 90
G P GPP + P + Q PP + +PQ PPPP G P+GP +
Sbjct: 192 GPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 251
Query: 91 EDEEP-----GDPREGEEEEEEDEPDPEAPE 116
+ P G P +G + + P P+
Sbjct: 252 QGPPPPGKPQGPPAQGGSKSQSARSPPGKPQ 282
Score = 39.7 bits (91), Expect = 0.006
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 32 SSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEE 91
SS N E + E P + G Q P + +PQ PPPP G P+GP + +
Sbjct: 14 SSAQNLNEDV-SQEESPSLIAG---NPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQ 69
Query: 92 DEEP-----GDPREGEEEEE----EDEPDPEAPENGSLPRFVP 125
P G P +G++ +P P+ G+ P+ P
Sbjct: 70 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 112
Score = 38.5 bits (88), Expect = 0.013
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 38 GEQPRAGEAGPPAVPG--------PARRAQAPPEEWERRPQLPPPPR-GPPEGPRGAAAP 88
G P GPPA G P + Q PP++ PQ PPPP G P+ P+ A P
Sbjct: 253 GPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQ--APP 310
Query: 89 EEEDEEPGDPREG 101
+ + P P +G
Sbjct: 311 AGQPQGPPRPPQG 323
Score = 37.4 bits (85), Expect = 0.030
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWE--RRPQLPP-PPRGPPEGPRGAAAPEEEDEE 94
G P+ G P P P + Q PP + + R P+ PP P+GPP P+G P+
Sbjct: 59 GPPPQGGNK--PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGNQPQGPPPP 114
Query: 95 PGDPREGEEEEEEDEPDPEAP 115
PG P +G + + P P
Sbjct: 115 PGKP-QGPPPQGGNRPQGPPP 134
Score = 36.6 bits (83), Expect = 0.051
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWE--RRPQLPP-PPRGPPEGPRGAAAPEEEDEE 94
G P+ G+ P P P + Q PP + + R Q PP P+GPP P+G P+
Sbjct: 181 GPPPQGGKK--PQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPP--PQGGNQPQGPPPP 236
Query: 95 PGDPREGEEEEEEDEPDPEAP 115
PG P +G + ++P P
Sbjct: 237 PGKP-QGPPPQGGNKPQGPPP 256
Score = 36.6 bits (83), Expect = 0.051
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEP-- 95
G P+ G P P P + Q PP + + Q P G P+GP P++E P
Sbjct: 242 GPPPQGGNK--PQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGP-----PQQEGNNPQG 294
Query: 96 ------GDPREGEEEEEEDEPDPEAPENGSLPRFVPR 126
G+P++ + P P G P P+
Sbjct: 295 PPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPPQ 331
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 50.1 bits (118), Expect = 4e-06
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEG--PRGAAAPEEEDEEP 95
G QP+ GPP PG + Q PP + +PQ PPPP G P+G P+G + P
Sbjct: 312 GNQPQ----GPPPPPG---KPQGPPPQGGNKPQGPPPP-GKPQGPPPQGGSKSRSARSPP 363
Query: 96 GDPREGEEEEEEDEPDPEAPENGSLPR 122
G P +G ++E + P P G P+
Sbjct: 364 GKP-QGPPQQEGNNPQGPPPPAGGNPQ 389
Score = 49.3 bits (116), Expect = 8e-06
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 38 GEQPRAGEA--GPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEP 95
G P+ G GPP+ PG + Q PP + +PQ PPPP G P+GP + + P
Sbjct: 38 GAPPQGGNKPQGPPSPPG---KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP 94
Query: 96 -----GDPREGEEEEE----EDEPDPEAPENGSLPRFVP 125
G P +G++ +P P+ G+ P+ P
Sbjct: 95 PGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 133
Score = 46.6 bits (109), Expect = 5e-05
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEG--PRGAAAPEEEDEEP 95
G QP+ GPP PG + Q PP + +PQ PPPP G P+G P+G + P
Sbjct: 250 GNQPQ----GPPPPPG---KPQGPPPQGGNKPQGPPPP-GKPQGPPPQGGSKSRSSRSPP 301
Query: 96 GDPR----EGEEEEEEDEPDPEAPE 116
G P+ +G + + P P P+
Sbjct: 302 GKPQGPPPQGGNQPQGPPPPPGKPQ 326
Score = 45.8 bits (107), Expect = 8e-05
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPP---PRGPPEGPRGAAAPEEEDEE 94
G QP+ GPP PG + Q PP + +PQ PPP P+GPP + +P +
Sbjct: 65 GNQPQ----GPPPPPG---KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 117
Query: 95 P-GDPREGEEEEEEDEPDPEAPE 116
P G P +G + + P P P+
Sbjct: 118 PQGPPPQGGNQPQGPPPPPGKPQ 140
Score = 45.8 bits (107), Expect = 8e-05
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP------RGAAAPEEE 91
G QP+ GPP PG + Q PP + +PQ PPPP G P+GP + +A
Sbjct: 188 GNQPQ----GPPPPPG---KPQGPPPQGGNKPQGPPPP-GKPQGPPPQGDNKSQSARSPP 239
Query: 92 DEEPGDPREGEEEEEEDEPDPEAPE 116
+ G P +G + + P P P+
Sbjct: 240 GKPQGPPPQGGNQPQGPPPPPGKPQ 264
Score = 44.7 bits (104), Expect = 2e-04
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP------RGAAAPEEE 91
G QP+ GPP PG + Q PP + +PQ PPPP G P+GP + ++
Sbjct: 126 GNQPQ----GPPPPPG---KPQGPPPQGGNKPQGPPPP-GKPQGPPPQGDNKSRSSRSPP 177
Query: 92 DEEPGDPREGEEEEEEDEPDPEAPE 116
+ G P +G + + P P P+
Sbjct: 178 GKPQGPPPQGGNQPQGPPPPPGKPQ 202
Score = 44.3 bits (103), Expect = 2e-04
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 17/105 (16%)
Query: 38 GEQPRAGEAGPP-------AVPGPARRAQAPPEEWERRPQLPPPPRGPPEG--------P 82
G P GPP + P + Q PP + +PQ PPPP G P+G P
Sbjct: 91 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 150
Query: 83 RGAAAPEEEDEEP--GDPREGEEEEEEDEPDPEAPENGSLPRFVP 125
+G P + P GD + +P P+ G+ P+ P
Sbjct: 151 QGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPP 195
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 38 GEQPRAGEAGPP--------AVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPE 89
G P GPP + P + Q PP + +PQ PPPP G P+GP +
Sbjct: 152 GPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 211
Query: 90 EEDEEP-----GDPREGEEEEEE-----DEPDPEAPENGSLPRFVP 125
+ P G P +G+ + + +P P+ G+ P+ P
Sbjct: 212 PQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPP 257
Score = 43.5 bits (101), Expect = 4e-04
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 19/93 (20%)
Query: 38 GEQPRAGEAGPPAVPG--------PARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPE 89
G P GPP G P + Q PP + +PQ PPPP G P+GP P+
Sbjct: 276 GPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP----PPQ 331
Query: 90 EEDEEPGDPREGEEEEEEDEPDPEAPENGSLPR 122
++ G P G +P P+ GS R
Sbjct: 332 GGNKPQGPPPPG-------KPQGPPPQGGSKSR 357
Score = 43.1 bits (100), Expect = 5e-04
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 41 PRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEP----- 95
P G+ + P + Q PP + +PQ PPPP G P+GP + + P
Sbjct: 225 PPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 284
Query: 96 GDPREGEEEEEED-----EPDPEAPENGSLPRFVP 125
G P +G + +P P+ G+ P+ P
Sbjct: 285 GPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPP 319
Score = 37.7 bits (86), Expect = 0.023
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWE--RRPQLPP-PPRGPPEGPRGAAAPEEEDEE 94
G P+ G P P P + Q PP + + R P+ PP P+GPP P+G P+
Sbjct: 80 GPPPQGGNK--PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGNQPQGPPPP 135
Query: 95 PGDPREGEEEEEEDEPDPEAP 115
PG P +G + ++P P
Sbjct: 136 PGKP-QGPPPQGGNKPQGPPP 155
Score = 37.0 bits (84), Expect = 0.039
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 32 SSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEG--PRGAAAPE 89
SS N E + E P + G Q P + +PQ PP P G P+G P+G P+
Sbjct: 14 SSAQNLNEDV-SQEESPSLIAG---NPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQ 69
Query: 90 EEDEEPGDPREGEEEEEEDEPDPEAP 115
PG P +G + ++P P
Sbjct: 70 GPPPPPGKP-QGPPPQGGNKPQGPPP 94
Score = 36.6 bits (83), Expect = 0.051
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 38 GEQPRAGEAGPPAVPG--------PARRAQAPPEEWERRPQLPPPPR-GPPEGPRGAAAP 88
G P GPP G P + Q PP++ PQ PPPP G P+ P+ A P
Sbjct: 338 GPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQ--APP 395
Query: 89 EEEDEEPGDPREG 101
+ + P P +G
Sbjct: 396 AGQPQGPPRPPQG 408
Score = 35.0 bits (79), Expect = 0.15
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEP-- 95
G P+ G P P P + Q PP + + + P G P+GP P++E P
Sbjct: 327 GPPPQGGNK--PQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGP-----PQQEGNNPQG 379
Query: 96 ------GDPREGEEEEEEDEPDPEAPENGSLPRFVPR 126
G+P++ + P P G P P+
Sbjct: 380 PPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPPQ 416
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 48.5 bits (114), Expect = 1e-05
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 41 PRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP--RGAAAPEEEDEEPGDP 98
PR+ P P + Q PP + +PQ PPPP G P+GP +G + + PG P
Sbjct: 90 PRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPP-GKPQGPPAQGGSKSQSARSPPGKP 148
Query: 99 REGEEEEEEDEPDPEAPENGSLPR 122
+G ++E + P P G P+
Sbjct: 149 -QGPPQQEGNNPQGPPPPAGGNPQ 171
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 38 GEQPRAGEA--GPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEP 95
G P+ G GPP PG + Q PP + +PQ PPPP G P+GP P
Sbjct: 38 GPSPQGGNKPQGPPPPPG---KPQGPPPQGGNKPQGPPPP-GKPQGPPPQGDKSRSPRSP 93
Query: 96 GDPREGEEEEEEDEPDPEAPENGSLPRFVP 125
+G + +P P+ G+ P+ P
Sbjct: 94 PGKPQG-PPPQGGKPQGPPPQGGNKPQGPP 122
Score = 38.5 bits (88), Expect = 0.013
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 32 SSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEE 91
SS N E + E P + G Q P + +PQ PPPP G P+GP + +
Sbjct: 14 SSAQNLNEDV-SQEESPSLIAG---NPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQ 69
Query: 92 DEEPGDPREGEEEEEEDEPDPEAP 115
P +G + + P +P
Sbjct: 70 GPPPPGKPQGPPPQGDKSRSPRSP 93
Score = 38.5 bits (88), Expect = 0.013
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEP-- 95
G P GPP +R ++PP +PQ PPP G P+GP + + P
Sbjct: 70 GPPPPGKPQGPPPQGDKSRSPRSPPG----KPQGPPPQGGKPQGPPPQGGNKPQGPPPPG 125
Query: 96 ---GDPREGEEEEEEDEPDPEAPE 116
G P +G + + P P+
Sbjct: 126 KPQGPPAQGGSKSQSARSPPGKPQ 149
Score = 38.5 bits (88), Expect = 0.013
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 38 GEQPRAGEAGPPAVPG--------PARRAQAPPEEWERRPQLPPPPR-GPPEGPRGAAAP 88
G P GPPA G P + Q PP++ PQ PPPP G P+ P+ A P
Sbjct: 120 GPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQ--APP 177
Query: 89 EEEDEEPGDPREG 101
+ + P P +G
Sbjct: 178 AGQPQGPPRPPQG 190
Score = 36.6 bits (83), Expect = 0.051
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEP-- 95
G P+ G P P P + Q PP + + Q P G P+GP P++E P
Sbjct: 109 GPPPQGGNK--PQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGP-----PQQEGNNPQG 161
Query: 96 ------GDPREGEEEEEEDEPDPEAPENGSLPRFVPR 126
G+P++ + P P G P P+
Sbjct: 162 PPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPPQ 198
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 48.1 bits (113), Expect = 2e-05
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEG--PRGAAAPEEEDEEP 95
G +P+ G P P P + Q PP + + Q PPPP G PEG P+G + P
Sbjct: 38 GRRPQGGNQ-PQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHP 96
Query: 96 GDPR----EGEEEEEEDEPDPEAPE 116
G P +G + + P P PE
Sbjct: 97 GKPERPPPQGGNQSQGTPPPPGKPE 121
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 20/95 (21%)
Query: 38 GEQPRAGEA-GPPAVPG--------PARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAA- 87
G P G+ GPP G P + Q PP++ +PQ PPPP G P+GP A
Sbjct: 154 GPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPP-GKPQGPPPAGGN 212
Query: 88 PEEEDEEPGDPREGEEEEEEDEPDPEAPENGSLPR 122
P++ P +G P P+ G PR
Sbjct: 213 PQQPQAPPAGKPQG---------PPPPPQGGRPPR 238
Score = 37.4 bits (85), Expect = 0.030
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPE-GPRGAAAPEEEDEEPG 96
G P+ G P P + + PP+ + PPPP P P+G PG
Sbjct: 80 GRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPG 139
Query: 97 DPR----EGEEEEEEDEPDPEAPE 116
P +G + + P P PE
Sbjct: 140 KPERPPPQGGNQSQGPPPHPGKPE 163
Score = 36.6 bits (83), Expect = 0.051
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 41 PRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPE--GPRGAAAPEEEDEEPG-- 96
P G P P + + PP + + PPPP G PE P+G + PG
Sbjct: 103 PPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKP 162
Query: 97 ---DPREGEEEEEEDEP--DPEAP--ENGSLPRFVP 125
P+EG + P P+ P + G+ P+ P
Sbjct: 163 EGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPP 198
Score = 35.8 bits (81), Expect = 0.086
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRG--PPEGPRGAAAPE 89
G P GPP G ++ QAPP + P PPPP+G PP +G P+
Sbjct: 196 GPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGP--PPPPQGGRPPRPAQGQQPPQ 247
Score = 35.0 bits (79), Expect = 0.15
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 41 PRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEE------ 94
P+ G P P + + PP + + Q PPP G PEGP P+E ++
Sbjct: 125 PQGGNQSHRPPPPPGKP-ERPPPQGGNQSQGPPPHPGKPEGP----PPQEGNKSRSARSP 179
Query: 95 PGDPREGEEEEEEDEPDPEAP 115
PG P +G ++E ++P P
Sbjct: 180 PGKP-QGPPQQEGNKPQGPPP 199
Score = 32.7 bits (73), Expect = 0.73
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 22/94 (23%)
Query: 41 PRAGEAGPPAVPGPARRAQAPPE---EWERRP-------QLPPPPRGPPEGP-------- 82
P GPP P ++Q PP + E RP Q PPP G PE P
Sbjct: 53 PPGKPQGPP--PQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQS 110
Query: 83 RGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPE 116
+G P + E P P +G + P P PE
Sbjct: 111 QGTPPPPGKPERP--PPQGGNQSHRPPPPPGKPE 142
>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
Length = 531
Score = 47.0 bits (110), Expect = 4e-05
Identities = 34/87 (39%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 40 QPRAGEAGP-PAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDP 98
+ + G A P P P P +P E + P++P P PPE G EEDEE D
Sbjct: 369 ETKEGAASPAPETPQPTSPETSPKETPMQPPEIPAPAHRPPE-DEGEENEGEEDEEWEDI 427
Query: 99 REGEEEEE-------EDEP--DPEAPE 116
E EEEEE E+EP D +APE
Sbjct: 428 SEDEEEEEIEVEEGDEEEPAQDHQAPE 454
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 46.6 bits (109), Expect = 5e-05
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 27 SPSCTSSCTNFGEQPRAGEAGPPAVPGP----------ARRAQAPPEEWERRPQLPPPPR 76
SPS + S ++ P PPA P P A +PP E++ P
Sbjct: 196 SPSPSPSSSSPSPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAYSPPPAPEQKYDPFEPTG 255
Query: 77 GPPEGPRGAAAPEEEDEEPGDPREGEEEEEEDE 109
P G +PEEE+EE + E EE+EEE+E
Sbjct: 256 SNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEE 288
Score = 39.3 bits (90), Expect = 0.008
Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 34/122 (27%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAA----------------- 86
G+ GP P P+ + +P PPPP PP P A
Sbjct: 180 GDGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAYS 239
Query: 87 ---APEEEDE--------------EPGDPREGEEEEEEDEPDPEAPENGSLPRFVPRFNF 129
APE++ + P E EEEEEE+E + + E L + + R +
Sbjct: 240 PPPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISE 299
Query: 130 SL 131
+L
Sbjct: 300 TL 301
Score = 35.4 bits (80), Expect = 0.11
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 15/63 (23%)
Query: 69 PQLPPPPRGPP---------------EGPRGAAAPEEEDEEPGDPREGEEEEEEDEPDPE 113
P PPP PP + P + PEE EE G EEEEEE+E + E
Sbjct: 974 PSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGGAEEEEEEEEEEEE 1033
Query: 114 APE 116
E
Sbjct: 1034 EEE 1036
Score = 34.3 bits (77), Expect = 0.25
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 35 TNFGEQPRAGE--AGPPAVPGPARRAQAPPEEWE----RRPQLPPPPRGPPE--GPRGAA 86
T++ + RA + + PP P A P + + P++ P E G RG A
Sbjct: 962 TSWSGEERAAKVPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGGA 1021
Query: 87 APEEEDEEPGDPREGEEEEEEDEPDP 112
EEE+EE E EEEEEE+E P
Sbjct: 1022 EEEEEEEE-----EEEEEEEEEEQQP 1042
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 45.8 bits (107), Expect = 8e-05
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 38 GEQPRAGEA--GPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP------RGAAAPE 89
G+ P+ G GPP PG + + PP + + Q PPP G PEGP + P
Sbjct: 101 GQPPQGGNQSQGPPPRPG---KPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP 157
Query: 90 EEDEEPGDPREGEEEEEEDEPDPEAPE 116
+ G P +G + + P P PE
Sbjct: 158 RPGKPEGPPPQGGNQSQGPPPHPGKPE 184
Score = 45.1 bits (105), Expect = 1e-04
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 38 GEQPRAGEA--GPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP--RGAAAPEEEDE 93
G P+ G GPP PG + + PP + + Q PPP G PEGP +G P+
Sbjct: 185 GPPPQGGNQSQGPPPRPG---KPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPP 241
Query: 94 EPGDPREGEEEEEEDEPDPEAP 115
PG P +G +E ++P P
Sbjct: 242 HPGKP-QGPPPQEGNKPQRPPP 262
Score = 44.3 bits (103), Expect = 2e-04
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 38 GEQPRAGEA--GPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP------RGAAAPE 89
G P+ G GPP PG + + PP + + Q PPP G PEGP + P
Sbjct: 143 GPPPQGGNQSQGPPPRPG---KPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPP 199
Query: 90 EEDEEPGDPREGEEEEEEDEPDPEAPE 116
+ G P +G + + P P PE
Sbjct: 200 RPGKPEGPPPQGGNQSQGPPPRPGKPE 226
Score = 43.1 bits (100), Expect = 5e-04
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 24 QYVSPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP- 82
Q SPS S G +P+ G P P P + + P + + Q PPP G PEGP
Sbjct: 25 QEESPSVISGKPE-GRRPQGGNQ-PQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPP 82
Query: 83 -----RGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPE 116
+ P + G P +G + + P P PE
Sbjct: 83 PQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPE 121
Score = 42.7 bits (99), Expect = 7e-04
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 47 GPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEEEEE 106
GPP PG + Q PP + +PQ PPPP G P+GP P ++P P G+ +
Sbjct: 238 GPPPHPG---KPQGPPPQEGNKPQRPPPP-GRPQGP---PPPGGNPQQPLPPPAGKPQGP 290
Query: 107 EDEPD---PEAPENGSLPR 122
P P P G P+
Sbjct: 291 PPPPQGGRPHRPPQGQPPQ 309
Score = 41.2 bits (95), Expect = 0.002
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 38 GEQPRAGEA--GPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP------RGAAAPE 89
G P+ G GPP PG + + P + + Q PPP G PEGP + P
Sbjct: 80 GPPPQGGNQSQGPPPRPG---KPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP 136
Query: 90 EEDEEPGDPREGEEEEEEDEPDPEAPE 116
+ G P +G + + P P PE
Sbjct: 137 RPGKPEGPPPQGGNQSQGPPPRPGKPE 163
Score = 37.7 bits (86), Expect = 0.023
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 38 GEQPRAGEA-GPPAVPGPARRAQ----------APPEEWERRPQLPPPPRGPPEGP---- 82
G PR G+ GPP P ++Q PP + + Q PPP G PEGP
Sbjct: 112 GPPPRPGKPEGPP--PQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQG 169
Query: 83 --RGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPE 116
+ P + G P +G + + P P PE
Sbjct: 170 GNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPE 205
Score = 37.0 bits (84), Expect = 0.039
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 41 PRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPRE 100
P E P P P R Q PP Q PPP G P+GP P + P P +
Sbjct: 249 PPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGP----PPPPQGGRPHRPPQ 304
Query: 101 GE 102
G+
Sbjct: 305 GQ 306
Score = 36.6 bits (83), Expect = 0.051
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 38 GEQPRAGEA-GPPAVPGPARRAQ----------APPEEWERRPQLPPPPRGPPEGP---- 82
G PR G+ GPP P ++Q PP + + Q PPP G PEGP
Sbjct: 154 GPPPRPGKPEGPP--PQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQG 211
Query: 83 --RGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPE 116
+ P + G P +G + + P P P+
Sbjct: 212 GNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQ 247
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 39 EQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPE---EEDEEP 95
+ P E G PA+ PA AQ + R +L P R PP P A E EEDEE
Sbjct: 58 DDPSPAEPGAPALRAPAAAAQG---QARRAAELSPEERAPPGRPGAPEAAELELEEDEEE 114
Query: 96 GDPRE--GEEEEEEDEPDPEAPENGSL 120
G+ E G+ EEE+ + E + SL
Sbjct: 115 GEEAELDGDLLEEEELEEAEEEDRSSL 141
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 45.1 bits (105), Expect = 1e-04
Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
Query: 28 PSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP-------- 79
P S GE+ GEAG P PG A E E+ PP GPP
Sbjct: 1254 PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1313
Query: 80 EGPRGAAAPEEEDEEPGDPRE----------GEEEEEED--EPDPEAPENGSLP 121
+GP+G P +PG P E G++ E+ D +P P P + P
Sbjct: 1314 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP 1367
Score = 41.6 bits (96), Expect = 0.002
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERR-------PQLPPPPRGP-PEGPRGAAAPE 89
GE+ GEAGPP GP P ++ + P P PP P P G G +
Sbjct: 1288 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDK 1347
Query: 90 EEDEEPGDPREGEEEEEEDEPDP 112
ED +PG P E P P
Sbjct: 1348 GEDGDPGQPGPPGPSGEAGPPGP 1370
Score = 40.0 bits (92), Expect = 0.005
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 27 SPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGP-----PEG 81
SP S G G GP PGPA AP E+ + P +GP P G
Sbjct: 1070 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1129
Query: 82 PRGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAP 115
P G+ + + E G+P + + ++ E P P
Sbjct: 1130 PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGP 1163
Score = 39.7 bits (91), Expect = 0.006
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQA---PPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEE 94
G + G GP PGP + P ER PQ P P G P GP+G P +D
Sbjct: 898 GPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFP-GPKGPPGPPGKDGL 956
Query: 95 PGDPREGEEEEEEDEPDPEAP 115
PG P + E + + P P
Sbjct: 957 PGHPGQRGETGFQGKTGPPGP 977
Score = 37.4 bits (85), Expect = 0.030
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLP--PPPRGPPEGPRGAAAPEEEDEEPGDP-RE 100
G GP PGP + P + PQ P PP P+G G A D PG P +E
Sbjct: 691 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE 750
Query: 101 GEEEEEE--DEPDPEAPENGSLPRFV 124
G+ E+ P P+ P PR V
Sbjct: 751 GQSGEKGALGPPGPQGPIGYPGPRGV 776
Score = 37.4 bits (85), Expect = 0.030
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 37 FGEQPRAGEAGPPAVPGP--ARRAQAPP----EEWERRPQLPPPPRGP--PEGPRGAAAP 88
FG++ G G P PGP + PP E + P PP P GP P+GP GA P
Sbjct: 1191 FGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGP 1250
Query: 89 EEEDEEPGD-PREGEEEEEEDEPDPEAP 115
+ G GE+ E + +P P
Sbjct: 1251 QGPPGSVGSVGGVGEKGEPGEAGNPGPP 1278
Score = 36.6 bits (83), Expect = 0.051
Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEE 103
GE G P PGP P E P PP RGPP GAA E E G E
Sbjct: 1348 GEDGDPGQPGP------PGPSGEAGPPGPPGKRGPP----GAAGAEGRQGEKGAKGEAGA 1397
Query: 104 EEEEDEPDPEAPE 116
E + P P+
Sbjct: 1398 EGPPGKTGPVGPQ 1410
Score = 33.9 bits (76), Expect = 0.33
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEP 95
G++ GE GP PGP P ++ R PRG P GPRG P P
Sbjct: 622 GDKGHRGERGPQGPPGP------PGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 675
Query: 96 GDP 98
G P
Sbjct: 676 GQP 678
Score = 33.5 bits (75), Expect = 0.43
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGD 97
G + GEAGP + GP AP + PP P+G GP+G EPG
Sbjct: 652 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKG-NMGPQG---------EPGP 701
Query: 98 PREGEEEEEEDEPDPEAP 115
P + + P P+ P
Sbjct: 702 PGQQGNPGPQGLPGPQGP 719
Score = 32.7 bits (73), Expect = 0.73
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGP-----PEGPRGAAAPEEEDEEPGDP 98
G GPP PG P + E Q P GP P+GP G P E PG P
Sbjct: 943 GPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPP 1002
Score = 32.3 bits (72), Expect = 0.95
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWER------RPQLPPPPRGP--PEGPRGAAAPE 89
G AG GPP GP A A + E+ + PP GP P+GP G PE
Sbjct: 1360 GPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPE 1419
Query: 90 EEDEEPG 96
PG
Sbjct: 1420 GLRGIPG 1426
Score = 30.8 bits (68), Expect = 2.8
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 32 SSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPP----PRGPP-----EGP 82
+S G G+ G PAV P + PP + PP P GPP GP
Sbjct: 426 TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP 485
Query: 83 RGAAAPEEEDEEPGDP 98
G D PG P
Sbjct: 486 PGRPGLPGADGLPGPP 501
Score = 30.4 bits (67), Expect = 3.6
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 43 AGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEPGDPR- 99
AG AG P G P ++ + + P GPP +GP GA D EPG PR
Sbjct: 1128 AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG-PRG 1186
Query: 100 -EGEEEEEEDE-----PDPEAP 115
+G ++ DE P P P
Sbjct: 1187 QQGMFGQKGDEGARGFPGPPGP 1208
Score = 30.0 bits (66), Expect = 4.7
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 42 RAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDP 98
R G G P G + P + R Q PP P G P G RG + PG+P
Sbjct: 551 RPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKP-GKRGRPGADGGRGMPGEP 606
Score = 30.0 bits (66), Expect = 4.7
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGP--PEGPRG 84
G Q + G AG P GP + E+ PP P+GP GPRG
Sbjct: 727 GPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRG 775
Score = 29.6 bits (65), Expect = 6.2
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
Query: 38 GEQPRAGEAGPP---AVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEED 92
G Q AG+ GP +PGP P + PP P GPP G +G + E
Sbjct: 1408 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQ---DGPPGPMGPPGLPGLKGDPGSKGEK 1464
Query: 93 EEP------GDPREGEEEEEEDEP----DPEAPENGSLP 121
P G P E E+ + P P A +G +P
Sbjct: 1465 GHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP 1503
Score = 29.3 bits (64), Expect = 8.1
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEP 95
G+ AG G P G AP + PQ PP P G P G G A P P
Sbjct: 1030 GKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRP 1089
Query: 96 ---GDPREGEEEEEEDEPDPEAP 115
G P E+ E P+ P
Sbjct: 1090 GPQGPPGPAGEKGAPGEKGPQGP 1112
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 45.1 bits (105), Expect = 1e-04
Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
Query: 28 PSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP-------- 79
P S GE+ GEAG P PG A E E+ PP GPP
Sbjct: 1203 PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1262
Query: 80 EGPRGAAAPEEEDEEPGDPRE----------GEEEEEED--EPDPEAPENGSLP 121
+GP+G P +PG P E G++ E+ D +P P P + P
Sbjct: 1263 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP 1316
Score = 41.6 bits (96), Expect = 0.002
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERR-------PQLPPPPRGP-PEGPRGAAAPE 89
GE+ GEAGPP GP P ++ + P P PP P P G G +
Sbjct: 1237 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDK 1296
Query: 90 EEDEEPGDPREGEEEEEEDEPDP 112
ED +PG P E P P
Sbjct: 1297 GEDGDPGQPGPPGPSGEAGPPGP 1319
Score = 40.0 bits (92), Expect = 0.005
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 27 SPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGP-----PEG 81
SP S G G GP PGPA AP E+ + P +GP P G
Sbjct: 1019 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1078
Query: 82 PRGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAP 115
P G+ + + E G+P + + ++ E P P
Sbjct: 1079 PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGP 1112
Score = 39.7 bits (91), Expect = 0.006
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQA---PPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEE 94
G + G GP PGP + P ER PQ P P G P GP+G P +D
Sbjct: 847 GPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFP-GPKGPPGPPGKDGL 905
Query: 95 PGDPREGEEEEEEDEPDPEAP 115
PG P + E + + P P
Sbjct: 906 PGHPGQRGETGFQGKTGPPGP 926
Score = 37.4 bits (85), Expect = 0.030
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLP--PPPRGPPEGPRGAAAPEEEDEEPGDP-RE 100
G GP PGP + P + PQ P PP P+G G A D PG P +E
Sbjct: 640 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE 699
Query: 101 GEEEEEE--DEPDPEAPENGSLPRFV 124
G+ E+ P P+ P PR V
Sbjct: 700 GQSGEKGALGPPGPQGPIGYPGPRGV 725
Score = 37.4 bits (85), Expect = 0.030
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 37 FGEQPRAGEAGPPAVPGP--ARRAQAPP----EEWERRPQLPPPPRGP--PEGPRGAAAP 88
FG++ G G P PGP + PP E + P PP P GP P+GP GA P
Sbjct: 1140 FGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGP 1199
Query: 89 EEEDEEPGD-PREGEEEEEEDEPDPEAP 115
+ G GE+ E + +P P
Sbjct: 1200 QGPPGSVGSVGGVGEKGEPGEAGNPGPP 1227
Score = 36.6 bits (83), Expect = 0.051
Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEE 103
GE G P PGP P E P PP RGPP GAA E E G E
Sbjct: 1297 GEDGDPGQPGP------PGPSGEAGPPGPPGKRGPP----GAAGAEGRQGEKGAKGEAGA 1346
Query: 104 EEEEDEPDPEAPE 116
E + P P+
Sbjct: 1347 EGPPGKTGPVGPQ 1359
Score = 33.9 bits (76), Expect = 0.33
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEP 95
G++ GE GP PGP P ++ R PRG P GPRG P P
Sbjct: 571 GDKGHRGERGPQGPPGP------PGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 624
Query: 96 GDP 98
G P
Sbjct: 625 GQP 627
Score = 33.5 bits (75), Expect = 0.43
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGD 97
G + GEAGP + GP AP + PP P+G GP+G EPG
Sbjct: 601 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKG-NMGPQG---------EPGP 650
Query: 98 PREGEEEEEEDEPDPEAP 115
P + + P P+ P
Sbjct: 651 PGQQGNPGPQGLPGPQGP 668
Score = 32.7 bits (73), Expect = 0.73
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGP-----PEGPRGAAAPEEEDEEPGDP 98
G GPP PG P + E Q P GP P+GP G P E PG P
Sbjct: 892 GPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPP 951
Score = 32.3 bits (72), Expect = 0.95
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWER------RPQLPPPPRGP--PEGPRGAAAPE 89
G AG GPP GP A A + E+ + PP GP P+GP G PE
Sbjct: 1309 GPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPE 1368
Query: 90 EEDEEPG 96
PG
Sbjct: 1369 GLRGIPG 1375
Score = 30.8 bits (68), Expect = 2.8
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 32 SSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPP----PRGPP-----EGP 82
+S G G+ G PAV P + PP + PP P GPP GP
Sbjct: 375 TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP 434
Query: 83 RGAAAPEEEDEEPGDP 98
G D PG P
Sbjct: 435 PGRPGLPGADGLPGPP 450
Score = 30.4 bits (67), Expect = 3.6
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 43 AGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEPGDPR- 99
AG AG P G P ++ + + P GPP +GP GA D EPG PR
Sbjct: 1077 AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG-PRG 1135
Query: 100 -EGEEEEEEDE-----PDPEAP 115
+G ++ DE P P P
Sbjct: 1136 QQGMFGQKGDEGARGFPGPPGP 1157
Score = 30.0 bits (66), Expect = 4.7
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 42 RAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDP 98
R G G P G + P + R Q PP P G P G RG + PG+P
Sbjct: 500 RPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKP-GKRGRPGADGGRGMPGEP 555
Score = 30.0 bits (66), Expect = 4.7
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGP--PEGPRG 84
G Q + G AG P GP + E+ PP P+GP GPRG
Sbjct: 676 GPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRG 724
Score = 29.6 bits (65), Expect = 6.2
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
Query: 38 GEQPRAGEAGPP---AVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEED 92
G Q AG+ GP +PGP P + PP P GPP G +G + E
Sbjct: 1357 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQ---DGPPGPMGPPGLPGLKGDPGSKGEK 1413
Query: 93 EEP------GDPREGEEEEEEDEP----DPEAPENGSLP 121
P G P E E+ + P P A +G +P
Sbjct: 1414 GHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP 1452
Score = 29.3 bits (64), Expect = 8.1
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEP 95
G+ AG G P G AP + PQ PP P G P G G A P P
Sbjct: 979 GKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRP 1038
Query: 96 ---GDPREGEEEEEEDEPDPEAP 115
G P E+ E P+ P
Sbjct: 1039 GPQGPPGPAGEKGAPGEKGPQGP 1061
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 45.1 bits (105), Expect = 1e-04
Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
Query: 28 PSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP-------- 79
P S GE+ GEAG P PG A E E+ PP GPP
Sbjct: 1242 PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1301
Query: 80 EGPRGAAAPEEEDEEPGDPRE----------GEEEEEED--EPDPEAPENGSLP 121
+GP+G P +PG P E G++ E+ D +P P P + P
Sbjct: 1302 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP 1355
Score = 41.6 bits (96), Expect = 0.002
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERR-------PQLPPPPRGP-PEGPRGAAAPE 89
GE+ GEAGPP GP P ++ + P P PP P P G G +
Sbjct: 1276 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDK 1335
Query: 90 EEDEEPGDPREGEEEEEEDEPDP 112
ED +PG P E P P
Sbjct: 1336 GEDGDPGQPGPPGPSGEAGPPGP 1358
Score = 40.0 bits (92), Expect = 0.005
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 27 SPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGP-----PEG 81
SP S G G GP PGPA AP E+ + P +GP P G
Sbjct: 1058 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1117
Query: 82 PRGAAAPEEEDEEPGDPREGEEEEEEDEPDPEAP 115
P G+ + + E G+P + + ++ E P P
Sbjct: 1118 PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGP 1151
Score = 39.7 bits (91), Expect = 0.006
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQA---PPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEE 94
G + G GP PGP + P ER PQ P P G P GP+G P +D
Sbjct: 886 GPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFP-GPKGPPGPPGKDGL 944
Query: 95 PGDPREGEEEEEEDEPDPEAP 115
PG P + E + + P P
Sbjct: 945 PGHPGQRGETGFQGKTGPPGP 965
Score = 37.4 bits (85), Expect = 0.030
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLP--PPPRGPPEGPRGAAAPEEEDEEPGDP-RE 100
G GP PGP + P + PQ P PP P+G G A D PG P +E
Sbjct: 679 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE 738
Query: 101 GEEEEEE--DEPDPEAPENGSLPRFV 124
G+ E+ P P+ P PR V
Sbjct: 739 GQSGEKGALGPPGPQGPIGYPGPRGV 764
Score = 37.4 bits (85), Expect = 0.030
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 37 FGEQPRAGEAGPPAVPGP--ARRAQAPP----EEWERRPQLPPPPRGP--PEGPRGAAAP 88
FG++ G G P PGP + PP E + P PP P GP P+GP GA P
Sbjct: 1179 FGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGP 1238
Query: 89 EEEDEEPGD-PREGEEEEEEDEPDPEAP 115
+ G GE+ E + +P P
Sbjct: 1239 QGPPGSVGSVGGVGEKGEPGEAGNPGPP 1266
Score = 36.6 bits (83), Expect = 0.051
Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEE 103
GE G P PGP P E P PP RGPP GAA E E G E
Sbjct: 1336 GEDGDPGQPGP------PGPSGEAGPPGPPGKRGPP----GAAGAEGRQGEKGAKGEAGA 1385
Query: 104 EEEEDEPDPEAPE 116
E + P P+
Sbjct: 1386 EGPPGKTGPVGPQ 1398
Score = 33.9 bits (76), Expect = 0.33
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEP 95
G++ GE GP PGP P ++ R PRG P GPRG P P
Sbjct: 610 GDKGHRGERGPQGPPGP------PGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 663
Query: 96 GDP 98
G P
Sbjct: 664 GQP 666
Score = 33.5 bits (75), Expect = 0.43
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGD 97
G + GEAGP + GP AP + PP P+G GP+G EPG
Sbjct: 640 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKG-NMGPQG---------EPGP 689
Query: 98 PREGEEEEEEDEPDPEAP 115
P + + P P+ P
Sbjct: 690 PGQQGNPGPQGLPGPQGP 707
Score = 32.7 bits (73), Expect = 0.73
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGP-----PEGPRGAAAPEEEDEEPGDP 98
G GPP PG P + E Q P GP P+GP G P E PG P
Sbjct: 931 GPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPP 990
Score = 32.3 bits (72), Expect = 0.95
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWER------RPQLPPPPRGP--PEGPRGAAAPE 89
G AG GPP GP A A + E+ + PP GP P+GP G PE
Sbjct: 1348 GPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPE 1407
Query: 90 EEDEEPG 96
PG
Sbjct: 1408 GLRGIPG 1414
Score = 30.8 bits (68), Expect = 2.8
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 32 SSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPP----PRGPP-----EGP 82
+S G G+ G PAV P + PP + PP P GPP GP
Sbjct: 414 TSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP 473
Query: 83 RGAAAPEEEDEEPGDP 98
G D PG P
Sbjct: 474 PGRPGLPGADGLPGPP 489
Score = 30.4 bits (67), Expect = 3.6
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 43 AGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEPGDPR- 99
AG AG P G P ++ + + P GPP +GP GA D EPG PR
Sbjct: 1116 AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG-PRG 1174
Query: 100 -EGEEEEEEDE-----PDPEAP 115
+G ++ DE P P P
Sbjct: 1175 QQGMFGQKGDEGARGFPGPPGP 1196
Score = 30.0 bits (66), Expect = 4.7
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 42 RAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDP 98
R G G P G + P + R Q PP P G P G RG + PG+P
Sbjct: 539 RPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKP-GKRGRPGADGGRGMPGEP 594
Score = 30.0 bits (66), Expect = 4.7
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGP--PEGPRG 84
G Q + G AG P GP + E+ PP P+GP GPRG
Sbjct: 715 GPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRG 763
Score = 29.6 bits (65), Expect = 6.2
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
Query: 38 GEQPRAGEAGPP---AVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEED 92
G Q AG+ GP +PGP P + PP P GPP G +G + E
Sbjct: 1396 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQ---DGPPGPMGPPGLPGLKGDPGSKGEK 1452
Query: 93 EEP------GDPREGEEEEEEDEP----DPEAPENGSLP 121
P G P E E+ + P P A +G +P
Sbjct: 1453 GHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP 1491
Score = 29.3 bits (64), Expect = 8.1
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEP 95
G+ AG G P G AP + PQ PP P G P G G A P P
Sbjct: 1018 GKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRP 1077
Query: 96 ---GDPREGEEEEEEDEPDPEAP 115
G P E+ E P+ P
Sbjct: 1078 GPQGPPGPAGEKGAPGEKGPQGP 1100
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 45.1 bits (105), Expect = 1e-04
Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 49 PAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAP---------------EEEDE 93
PA PGP PP LPPP P P G P EEE+E
Sbjct: 833 PAAPGPLPPPPPPPPPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEEEEE 892
Query: 94 EPGDPREGEEEEEEDEPDPEAPEN 117
E + E EEEEEE+E E E+
Sbjct: 893 EEEEEEEEEEEEEEEEDFEEEEED 916
Score = 44.7 bits (104), Expect = 2e-04
Identities = 36/107 (33%), Positives = 41/107 (38%), Gaps = 32/107 (29%)
Query: 41 PRAGEAGPPAVPGPARRAQAPPEEWERRP-QLPPPPRGP---------------PEGPRG 84
P GPP P A+ PEE P LPPPP P PEG G
Sbjct: 809 PPIAPTGPPTASPPVP-AKEEPEELPAAPGPLPPPPPPPPPVPGPVTLPPPQLVPEGTPG 867
Query: 85 AAAP---------------EEEDEEPGDPREGEEEEEEDEPDPEAPE 116
P +EE+EE + E EEEEEE+E D E E
Sbjct: 868 GGGPPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEE 914
Score = 32.0 bits (71), Expect = 1.2
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 89 EEEDEEPGDPREGEEEEEEDEPDPEAPE 116
EEE EE + EGE EEEE+E D E E
Sbjct: 928 EEEFEEEFEEEEGELEEEEEEEDEEEEE 955
Score = 31.6 bits (70), Expect = 1.6
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 48 PPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEE-----EDEEPGDPREGE 102
P +PGP E+ P PPP PP+ G P + EE D
Sbjct: 721 PRLLPGPENHRAGSNEDPILAPSGTPPPTIPPDETFGGRVPRPAFVHYDKEEASDVEISL 780
Query: 103 EEEEEDE---------PDPEAPENGSLP 121
E + +D P P P +G+ P
Sbjct: 781 ESDSDDSVVIVPEGLPPLPPPPPSGATP 808
Score = 29.6 bits (65), Expect = 6.2
Identities = 29/94 (30%), Positives = 34/94 (36%), Gaps = 17/94 (18%)
Query: 39 EQPRAGEAGPPAVPGPARRAQAPPEEWER----RPQLPP---PPRG--------PPEGPR 83
E P + P PG + P E ER P L P P +G P GP
Sbjct: 990 ESPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPEALPSQGEVEREGESPAAGPP 1049
Query: 84 GAAAPEEEDEEPGDPREGEEEEEED--EPDPEAP 115
EEE P E E E+ D +P PE P
Sbjct: 1050 PQELVEEEPSAPPTLLEEETEDGSDKVQPPPETP 1083
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 45.1 bits (105), Expect = 1e-04
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 41 PRAGEAGP-PAVPGPA--RRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGD 97
P G++GP P +P P ++ Q PP PQ PPP + PP P P ++ + P
Sbjct: 49 PGPGQSGPKPPIPPPPPHQQQQQPP------PQQPPPQQPPPHQPPPHPQPHQQQQPPPP 102
Query: 98 PREGEEEEEEDEPDPEAPENGSLP 121
P++ + P P AP GS P
Sbjct: 103 PQDSSKPVVAQGPGP-APGVGSAP 125
Score = 36.2 bits (82), Expect = 0.066
Identities = 27/96 (28%), Positives = 32/96 (33%), Gaps = 16/96 (16%)
Query: 38 GEQPRAGEAGPPAVP---------GPARRAQAPPEEWERRPQLP---PPPRGPPEGPRGA 85
G P A + PPA P GP PP P P PP G P P A
Sbjct: 122 GSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQA 181
Query: 86 AAPEEEDEEPGDPREGEEEEEEDEPDPEAPENGSLP 121
P P G ++ P P P+ G +P
Sbjct: 182 GGPPPPPAAVPGPGPGPKQ----GPGPGGPKGGKMP 213
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 44.7 bits (104), Expect = 2e-04
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWER---------RPQLPPPPRGPPEGP--RGAA 86
G P+ G P P P + Q PP + ++ +PQ PPP G P+GP +G +
Sbjct: 59 GPPPQGGNK--PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGS 116
Query: 87 APEEEDEEPGDPREGEEEEEEDEPDPEAPENGSLPR 122
+ PG P +G ++E + P P G P+
Sbjct: 117 KSQSARSPPGKP-QGPPQQEGNNPQGPPPPAGGNPQ 151
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 21/96 (21%)
Query: 38 GEQPRAGEA--GPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP-------RGAAAP 88
G P+ G GPP PG + Q PP + +PQ PPPP G P+GP R +P
Sbjct: 38 GPSPQGGNKPQGPPPPPG---KPQGPPPQGGNKPQGPPPP-GKPQGPPPQGDKSRSPRSP 93
Query: 89 EEEDEEP--------GDPREGEEEEEEDEPDPEAPE 116
+ + P G P +G + + P P+
Sbjct: 94 PGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQ 129
Score = 38.9 bits (89), Expect = 0.010
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 38 GEQPRAGEA-GPPAVPG--------PARRAQAPPEEWERRPQLPPPPR-GPPEGPRGAAA 87
G P+ G+ GPPA G P + Q PP++ PQ PPPP G P+ P+ A
Sbjct: 99 GPPPQGGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQ--AP 156
Query: 88 PEEEDEEPGDPREG 101
P + + P P +G
Sbjct: 157 PAGQPQGPPRPPQG 170
Score = 38.5 bits (88), Expect = 0.013
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 32 SSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEE 91
SS N E + E P + G Q P + +PQ PPPP G P+GP + +
Sbjct: 14 SSAQNLNEDV-SQEESPSLIAG---NPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQ 69
Query: 92 DEEPGDPREGEEEEEEDEPDPEAP 115
P +G + + P +P
Sbjct: 70 GPPPPGKPQGPPPQGDKSRSPRSP 93
Score = 35.8 bits (81), Expect = 0.086
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 41 PRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEP----- 95
PR+ P P + Q PP + + Q P G P+GP P++E P
Sbjct: 90 PRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQGP-----PQQEGNNPQGPPP 144
Query: 96 ---GDPREGEEEEEEDEPDPEAPENGSLPRFVPR 126
G+P++ + P P G P P+
Sbjct: 145 PAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPPQ 178
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 43.5 bits (101), Expect = 4e-04
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 38 GEQPRAGEAGPPAVP---GPARRAQAPPEEWERRPQ---LPPPPRGPP--EGPRGAAAPE 89
GE+ GEAG P +P GP E+ E P PP P+GPP +GP+G+ P
Sbjct: 1282 GEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPV 1341
Query: 90 EEDEEPGDPRE----GEEEEEEDEPDPEAPENGSLP 121
+PG P E G++ D+ D P P
Sbjct: 1342 GFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSP 1377
Score = 39.7 bits (91), Expect = 0.006
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERR---------PQLPPPPRGPP--EGPRGAAAPEEED 92
G+ GPP PGPA + P ++ + P P P GPP GP G A PE
Sbjct: 1345 GDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQ 1404
Query: 93 EEPGDPREGEEEEEEDEPDPEAPE 116
E G E E + P P+
Sbjct: 1405 GEKGAKGEAGLEGPPGKTGPIGPQ 1428
Score = 38.9 bits (89), Expect = 0.010
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRP------QLP---PPPRGPPEGPRGAAAPEEEDEE 94
G GP PGPA AP E+ + P Q P P P G P GP G + E E
Sbjct: 1105 GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAG-PVGPPGEDGDKGEIGE 1163
Query: 95 PGDPREGEEEEEEDEPDPEAPE 116
PG ++ E+ P P P+
Sbjct: 1164 PGQKGSKGDKGEQGPPGPTGPQ 1185
Score = 38.9 bits (89), Expect = 0.010
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 37 FGEQPRAGEAGPPAVPGPA--RRAQAPPEE-------WERRPQLPPPPRGPPEGPRGAAA 87
FG++ G G P PGP + PP E + P PP PRGP P GA
Sbjct: 1209 FGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAP-GADG 1267
Query: 88 PEEEDEEPGDP-REGEEEEEEDEPDPEAPENGSLP 121
P+ G+P GE+ E + +P P G P
Sbjct: 1268 PQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPP 1302
Score = 37.4 bits (85), Expect = 0.030
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRP---------------QLPPPPRGPPEGP 82
G R G GP +PGPA P E+ ++ Q PP P GP +GP
Sbjct: 1129 GPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGP-QGP 1187
Query: 83 RGAAAPEEEDEEPGDPR--EGEEEEEEDE-----PDPEAP 115
G P D EPG PR +G ++ DE P P P
Sbjct: 1188 IGQPGPSGADGEPG-PRGQQGLFGQKGDEGPRGFPGPPGP 1226
Score = 37.0 bits (84), Expect = 0.039
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEP 95
GE+ G+ GP PGP P ++ ER PRG P GPRG P+ P
Sbjct: 640 GEKGHRGDPGPSGPPGP------PGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPP 693
Query: 96 GDP 98
G P
Sbjct: 694 GPP 696
Score = 35.4 bits (80), Expect = 0.11
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 44 GEAGPPAV---PGPARRA-----QAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEP 95
GE GP + PGP + PP E R P P P G P GP+G P +D P
Sbjct: 919 GERGPRGITGKPGPKGNSGGDGPAGPPGE--RGPNGPQGPTGFP-GPKGPPGPPGKDGLP 975
Query: 96 GDPREGEEEEEEDEPDPEAP 115
G P + E + + P P
Sbjct: 976 GHPGQRGETGFQGKTGPPGP 995
Score = 34.3 bits (77), Expect = 0.25
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEE 103
G+ GPP GP R + E + PP G P GP+GA D G P E
Sbjct: 1390 GKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTG-PIGPQGAPGKPGPDGLRGIPGPVGE 1448
Query: 104 EEEEDEPDPEAPENGSLPRFVP 125
+ P P+ P P +P
Sbjct: 1449 QGLPGSPGPDGPPGPMGPPGLP 1470
Score = 33.9 bits (76), Expect = 0.33
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQ--LPPPPRGPPEGPRGAAAPEEEDEEP 95
G+ G GP PGP + P + PQ + PP P G G D P
Sbjct: 703 GQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPP 762
Query: 96 GDP-REGEEEEE--EDEPDPEAPENGSLPRFV 124
G P +EG E+ + P P+ P PR V
Sbjct: 763 GHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGV 794
Score = 33.5 bits (75), Expect = 0.43
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWER------RPQLPPPPRGPP--EGPRGAAAPE 89
G+ G G P PGP P E+ P PP P GPP G +G + P+
Sbjct: 1420 GKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPK 1479
Query: 90 EEDEEP------GDPREGEEEEEEDEPDPE 113
E P G P E E+ + P P+
Sbjct: 1480 GEKGHPGLIGLIGPPGEQGEKGDRGLPGPQ 1509
Score = 33.1 bits (74), Expect = 0.56
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP-----EGPRGAAAPEEEDEEPGDP 98
G GPP PG P + E Q P GPP +GP G P E PG P
Sbjct: 961 GPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPP 1020
Score = 33.1 bits (74), Expect = 0.56
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGP-----PEGPRGA------A 86
GEQ GE G +PGP + E+ P P P GP P GP+GA
Sbjct: 1495 GEQ---GEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPT 1551
Query: 87 APEEEDEEPGDPREGEEEEEEDEPDP 112
P+ E PG P E +P P
Sbjct: 1552 GPKGEAGHPGPPGPPGPPGEVIQPLP 1577
Score = 31.2 bits (69), Expect = 2.1
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEPGD 97
G GPP PGPA ER P P G P GP+G P E PG+
Sbjct: 1075 GNEGPPGPPGPA------GSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGE 1124
Score = 30.4 bits (67), Expect = 3.6
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPG 96
G Q + G GPP V GP ER PP P G +G G A E +PG
Sbjct: 985 GFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPG-EQGLPGLAGKEGTKGDPG 1042
Score = 30.0 bits (66), Expect = 4.7
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGP--PEGPRGAAAPEEEDEEP 95
G Q G G P PG A E+ R P PRG P GPRG P +P
Sbjct: 877 GRQGPKGSIGFPGFPG------ANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKP 930
Query: 96 GDPREGEEEEEEDEPDPEAPENG 118
G P+ + P E NG
Sbjct: 931 G-PKGNSGGDGPAGPPGERGPNG 952
Score = 30.0 bits (66), Expect = 4.7
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERR---------PQLPPP---PRGP-----PE 80
G Q G GP PGP + P +R P PP P+GP P
Sbjct: 952 GPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPM 1011
Query: 81 GPRGAAAPEEEDEEPGDPREGEEEEEEDEPDP 112
G RG P E G P +E + +P P
Sbjct: 1012 GERGHPGPPGPPGEQGLPGLAGKEGTKGDPGP 1043
Score = 29.6 bits (65), Expect = 6.2
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPP--EGPRGAAAPEEEDEEP 95
G + G+ G PA+ P + PP P+ P GPP GP G E P
Sbjct: 447 GPRGEKGQKGEPAIIEPGMLIEGPP-----GPEGPAGLPGPPGTMGPTGQVGDPGERGPP 501
Query: 96 GDP 98
G P
Sbjct: 502 GRP 504
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 43.1 bits (100), Expect = 5e-04
Identities = 28/68 (41%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 38 GEQPRAGEA-GPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPG 96
GE P A A GPP P PA Q PP PPPP PP GP G A P+
Sbjct: 11 GESPGATPAPGPPPPPPPAPPQQQPP---------PPPPPAPPPGP-GPAPPQHPPRAEA 60
Query: 97 DPREGEEE 104
P E +E
Sbjct: 61 LPPEAADE 68
Score = 34.7 bits (78), Expect = 0.19
Identities = 26/88 (29%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 42 RAGEAGPPAVPGPARRAQAPP--EEWERRPQLPPP-PRGPPEGPRGAAAPEEEDEEPGDP 98
R G P PG A A+ P E PQ P P GP GP+ + + P
Sbjct: 78 RDSSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAASGPAPG 137
Query: 99 REGEEEEEEDEPDPEAPENGSLPRFVPR 126
EE +E P GS F+ R
Sbjct: 138 PGPAEEAGSEEAGPAGEPRGSQASFMQR 165
Score = 29.6 bits (65), Expect = 6.2
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 48 PPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAP 88
PP PGPA A +P PPPP PP P AP
Sbjct: 761 PP--PGPAPAAASPG---------PPPPASPPGAPASPRAP 790
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 43.1 bits (100), Expect = 5e-04
Identities = 26/78 (33%), Positives = 29/78 (37%)
Query: 38 GEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGD 97
G G GP PG RA A ER P PP P GPP P P + GD
Sbjct: 217 GPMGMRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGD 276
Query: 98 PREGEEEEEEDEPDPEAP 115
P E + P+ P
Sbjct: 277 PLLSNTFTETNNHWPQGP 294
Score = 35.0 bits (79), Expect = 0.15
Identities = 27/88 (30%), Positives = 29/88 (32%), Gaps = 17/88 (19%)
Query: 27 SPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQAP----------------PEEWERRPQ 70
SP + GE+ G GPP PGP P E PQ
Sbjct: 233 SPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLSNTFTETNNHWPQ 292
Query: 71 LPPPPRGPPEGPRGAAAPEEEDEEPGDP 98
P P GPP GP G P PG P
Sbjct: 293 GPTGPPGPP-GPMGPPGPPGPTGVPGSP 319
Score = 33.5 bits (75), Expect = 0.43
Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 24 QYVSPSCTSSCTNFGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPR 83
Q+ P +++ T G GPP PGP PP PP P G P P
Sbjct: 273 QHGDPLLSNTFTETNNHWPQGPTGPPGPPGP----MGPPG--------PPGPTGVPGSPG 320
Query: 84 --GAAAPEEEDEEPGDPREGEEEEEEDEPDPE 113
G P G P E E EP P+
Sbjct: 321 HIGPPGPTGPKGISGHPGEKGERGLRGEPGPQ 352
Score = 32.3 bits (72), Expect = 0.95
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 44 GEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPRE 100
G GPP GP + P E+ ER RG P GP+G+A E GDP E
Sbjct: 320 GHIGPPGPTGPKGISGHPGEKGER------GLRGEP-GPQGSAGQRGEPGPKGDPGE 369
>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
Length = 166
Score = 42.7 bits (99), Expect = 7e-04
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 40 QPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGP--RGAAAPEEEDEEPGD 97
QP AG+ P Q PP++ ++ Q PPPP+G P+GP +G P + G
Sbjct: 57 QPSAGDGNQDDGP-----QQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGP 111
Query: 98 PREG 101
P++G
Sbjct: 112 PQQG 115
Score = 38.9 bits (89), Expect = 0.010
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 29/109 (26%)
Query: 38 GEQPRAGEAGPP--------AVPGPARRAQAPPEEW------ERRPQLPP-------PPR 76
G Q + GPP P P + Q PP++ + RPQ PP PPR
Sbjct: 63 GNQDDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPRPPR 122
Query: 77 GPPEGPRGAAAPEEEDEEPGDPREGEEEEEEDEPD---PEAPENGSLPR 122
G P+GP P++ + G P + + P P+ P G P+
Sbjct: 123 GRPQGP-----PQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSPQ 166
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 40 QPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPP------PRGPPEGPR---------- 83
+P + +AGPP +P P A+ PP + P LPPP P PP P+
Sbjct: 1180 RPASEQAGPPELPPPPPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKL 1239
Query: 84 -GAAAPEEEDEEPGDPREGEEEEEEDEPDPEAPE 116
G+ P + P E + P P +P+
Sbjct: 1240 QGSPTPTSKKVPLPGPGSPEVKRAHGTPPPVSPK 1273
Score = 35.0 bits (79), Expect = 0.15
Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 43 AGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGE 102
+G AGP P PAR+ PP + P PP P P AP P P
Sbjct: 1292 SGSAGPSPAPSPARQ---PPAALAKPPGTPPSLGASPAKPPSPGAPAL--HVPAKPPRAA 1346
Query: 103 EEEEEDEPDPEAPENGSLP 121
P AP G+ P
Sbjct: 1347 AAAAAAAAAPPAPPEGASP 1365
Score = 30.8 bits (68), Expect = 2.8
Identities = 25/81 (30%), Positives = 27/81 (33%), Gaps = 20/81 (24%)
Query: 40 QPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPR 99
QP GE GP A PGPA PP P P P E D EPG P+
Sbjct: 838 QPVEGEVGP-AAPGPAP---------------PPVPTAVPT----LCLPPEADAEPGRPK 877
Query: 100 EGEEEEEEDEPDPEAPENGSL 120
+ PE L
Sbjct: 878 KRAHSLNRYAASDSEPERDEL 898
>gi|5730045 solute carrier family 16, member 2 [Homo sapiens]
Length = 613
Score = 42.4 bits (98), Expect = 0.001
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 27 SPSCTSSCTNFGE-QPRAGEAGPPAVPGPARRA---QAPPEE---WERRPQLPPPPRGPP 79
SP +SSC++ + QP++G +GP + PA A QA E W+ Q P G P
Sbjct: 44 SPPSSSSCSSRNKYQPQSGSSGPSSHSPPAAMALQSQASEEAKGPWQEADQEQQEPVGSP 103
Query: 80 EGPRGAAAPEEEDEEPGDPREGEEEEEEDEPDP 112
E P PE E E P + E + PDP
Sbjct: 104 E-PESEPEPEPEPEPVPVPPPEPQPEPQPLPDP 135
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 39 EQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEED--EEPG 96
E+P A PA + PPE P P P P+ AAA E D EE
Sbjct: 13 EKPSASALEQPATLQEVASQEVPPELATPAPAWEPQPE--PDERLEAAACEVNDLGEEEE 70
Query: 97 DPREGEEEEEEDEPDPEAPENGSLPRFVPRFN 128
+ E +EEEEED+ D E + G +P N
Sbjct: 71 EEEEEDEEEEEDDDDDELEDEGEEEASMPNEN 102
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 39 EQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEED--EEPG 96
E+P A PA + PPE P P P P+ AAA E D EE
Sbjct: 214 EKPSASALEQPATLQEVASQEVPPELATPAPAWEPQPE--PDERLEAAACEVNDLGEEEE 271
Query: 97 DPREGEEEEEEDEPDPEAPENGSLPRFVPRFN 128
+ E +EEEEED+ D E + G +P N
Sbjct: 272 EEEEEDEEEEEDDDDDELEDEGEEEASMPNEN 303
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 39 EQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEED--EEPG 96
E+P A PA + PPE P P P P+ AAA E D EE
Sbjct: 214 EKPSASALEQPATLQEVASQEVPPELATPAPAWEPQPE--PDERLEAAACEVNDLGEEEE 271
Query: 97 DPREGEEEEEEDEPDPEAPENGSLPRFVPRFN 128
+ E +EEEEED+ D E + G +P N
Sbjct: 272 EEEEEDEEEEEDDDDDELEDEGEEEASMPNEN 303
>gi|122937247 unc-13 homolog A [Homo sapiens]
Length = 1791
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 48 PPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEE---DEEPGDPREGEEE 104
PPA PG +A P E ++ P P P + P PE E DEE PRE EE
Sbjct: 466 PPAAPGKEDKAPVAPTEAPDMAKVAPKPATPDKVPAAEQIPEAEPPKDEESFRPREDEEG 525
Query: 105 EEEDEPDPEAPEN 117
+E + A N
Sbjct: 526 QEGQDSMSRAKAN 538
>gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]
Length = 1812
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 48 PPAVPGPARRAQAPPEEWERRPQLP-PPPRGPPEGPRGAAAPEEEDEEPGD----PREGE 102
PP P P+ + + E+ Q PPR P GPR P D++ D P G+
Sbjct: 147 PPPQPQPSLKRNPKHADGEKEDQFNGSPPRPQPRGPRTPPGPPPPDDDEDDPVPLPVSGD 206
Query: 103 EEEE----EDEPDPEAPENGSLPR 122
+EE+ ED +P +P+ S+P+
Sbjct: 207 KEEDAPHREDYFEPISPDRNSVPQ 230
Score = 33.5 bits (75), Expect = 0.43
Identities = 31/96 (32%), Positives = 34/96 (35%), Gaps = 22/96 (22%)
Query: 38 GEQPRAGEAGPPAVPGPA-----------------RRAQAPPEEWERRPQLPPPPRGPPE 80
G PR GP PGP + AP E P P P E
Sbjct: 172 GSPPRPQPRGPRTPPGPPPPDDDEDDPVPLPVSGDKEEDAPHREDYFEPISPDRNSVPQE 231
Query: 81 GP---RGAAAPE--EEDEEPGDPREGEEEEEEDEPD 111
G G E EE EE D + EEEE+EDE D
Sbjct: 232 GQYSDEGEVEEEQQEEGEEDEDDVDVEEEEDEDEDD 267
Score = 29.3 bits (64), Expect = 8.1
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 72 PPPPRGPPEGPRGA-------AAPEEEDEEPGDPREGEEEEEEDEPDPEAPEN 117
PPPP PP P+ + A E+ED+ G P + P P P++
Sbjct: 141 PPPPPPPPPQPQPSLKRNPKHADGEKEDQFNGSPPRPQPRGPRTPPGPPPPDD 193
Score = 29.3 bits (64), Expect = 8.1
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 89 EEEDEEPGDPRE----GEEEEEEDEPDPEAPENG 118
EEEDE+ D R EEEEE++E + E E G
Sbjct: 259 EEEDEDEDDRRTVDSIPEEEEEDEEEEGEEDEEG 292
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,926,712
Number of Sequences: 37866
Number of extensions: 1440104
Number of successful extensions: 30704
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 905
Number of HSP's that attempted gapping in prelim test: 15906
Number of HSP's gapped (non-prelim): 10282
length of query: 471
length of database: 18,247,518
effective HSP length: 106
effective length of query: 365
effective length of database: 14,233,722
effective search space: 5195308530
effective search space used: 5195308530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.