Guide to the Human Genome
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Name: HS6ST1 Sequence: fasta or formatted (411aa) NCBI GI: 148747866
Description:

heparan sulfate 6-O-sulfotransferase 1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         20           2
 C cysteine            2.9         12           1
 D aspartate           6.1         25           2
 E glutamate           7.1         29           2
 F phenylalanine       4.9         20           2
 G glycine             6.6         27           2
 H histidine           1.9          8           1
 I isoleucine          2.4         10           2
 K lysine              4.4         18           2
 L leucine            10.7         44           3
 M methionine          2.7         11           1
 N asparagine          2.7         11           2
 P proline             5.8         24           2
 Q glutamine           4.1         17           2
 R arginine           11.4         47           4
 S serine              4.4         18           1
 T threonine           5.8         24           2
 V valine              4.9         20           2
 W tryptophan          1.7          7           1
 Y tyrosine            4.6         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heparan sulfate 6-O-sulfotransferase 1 
HS6ST3                0.572   PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [...
HS6ST3                0.572   heparan sulfate 6-O-sulfotransferase 3 
HS6ST2                0.569   heparan sulfate 6-O-sulfotransferase 2 isoform S [H...
HS6ST2                0.546   heparan sulfate 6-O-sulfotransferase 2 isoform L [H...
INCENP                0.012   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.012   inner centromere protein antigens 135/155kDa isofor...
LOC100133220          0.012   PREDICTED: hypothetical protein 
NONO                  0.011   non-POU domain containing, octamer-binding isoform ...
NONO                  0.011   non-POU domain containing, octamer-binding isoform ...
NONO                  0.011   non-POU domain containing, octamer-binding isoform ...
NONO                  0.011   non-POU domain containing, octamer-binding isoform 1...
PLA2G2C               0.011   phospholipase A2, group IIC 
MAP4K4                0.010   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.010   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.010   mitogen-activated protein kinase kinase kinase kinas...
LOC283685             0.010   PREDICTED: golgi autoantigen, golgin subfamily a-li...
WDR47                 0.010   WD repeat domain 47 isoform 3 
WDR47                 0.010   WD repeat domain 47 isoform 1 
WDR47                 0.010   WD repeat domain 47 isoform 2 
LOC283685             0.010   PREDICTED: golgi autoantigen, golgin subfamily a-li...
GOLGA6D               0.008   golgi autoantigen, golgin subfamily a, 6D 
ADAM9                 0.008   ADAM metallopeptidase domain 9 isoform 1 precursor [H...
GOLGA6C               0.008   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
RDX                   0.008   radixin 
GOLGA6                0.008   golgi autoantigen, golgin subfamily a, 6 
MLLT4                 0.008   myeloid/lymphoid or mixed-lineage leukemia (trithora...
GOLGA6B               0.008   golgi autoantigen, golgin subfamily a, 6B 
TUBGCP6               0.008   tubulin, gamma complex associated protein 6 
CROCC                 0.008   ciliary rootlet coiled-coil 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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