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Search of human proteins with 239755847
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755847 PREDICTED: hypothetical protein [Homo sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755847 PREDICTED: hypothetical protein [Homo sapiens] 325 1e-89
gi|239750371 PREDICTED: hypothetical protein XP_002347408 [Homo ... 325 1e-89
gi|239744675 PREDICTED: hypothetical protein XP_002343236 [Homo ... 325 1e-89
gi|56550035 colon carcinoma related protein [Homo sapiens] 35 0.029
gi|169636435 caudal type homeobox 2 [Homo sapiens] 33 0.086
gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo ... 33 0.11
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ... 33 0.11
gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo ... 33 0.11
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 33 0.11
gi|239752340 PREDICTED: hypothetical protein XP_002348205 [Homo ... 32 0.19
gi|239746853 PREDICTED: hypothetical protein XP_002343864 [Homo ... 32 0.19
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 32 0.19
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 32 0.19
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 31 0.33
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 31 0.43
gi|134288896 hypothetical protein LOC143684 [Homo sapiens] 30 0.73
gi|4507347 TBP-associated factor 2 [Homo sapiens] 30 0.95
gi|239756303 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
gi|168823435 hypothetical protein LOC79747 [Homo sapiens] 29 1.2
gi|42263098 Sp6 transcription factor [Homo sapiens] 29 1.2
gi|61966923 forkhead box B2 [Homo sapiens] 29 1.2
gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo ... 29 1.6
gi|169204993 PREDICTED: hypothetical protein LOC100130711 [Homo ... 29 1.6
gi|169205515 PREDICTED: hypothetical protein LOC100130711 [Homo ... 29 1.6
gi|169204464 PREDICTED: hypothetical protein LOC100130711 [Homo ... 29 1.6
gi|55749480 syndecan 1 precursor [Homo sapiens] 28 2.1
gi|29568086 syndecan 1 precursor [Homo sapiens] 28 2.1
gi|89886261 histidine rich carboxyl terminus 1 [Homo sapiens] 28 2.1
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i... 28 2.8
gi|41349446 stromal interaction molecule 2 [Homo sapiens] 28 2.8
>gi|239755847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 325 bits (832), Expect = 1e-89
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60
MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW
Sbjct: 1 MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60
Query: 61 KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120
KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR
Sbjct: 61 KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120
Query: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146
DENRSPLRQPLPCAQKSSGKDGGVWT
Sbjct: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146
>gi|239750371 PREDICTED: hypothetical protein XP_002347408 [Homo
sapiens]
Length = 146
Score = 325 bits (832), Expect = 1e-89
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60
MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW
Sbjct: 1 MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60
Query: 61 KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120
KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR
Sbjct: 61 KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120
Query: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146
DENRSPLRQPLPCAQKSSGKDGGVWT
Sbjct: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146
>gi|239744675 PREDICTED: hypothetical protein XP_002343236 [Homo
sapiens]
Length = 146
Score = 325 bits (832), Expect = 1e-89
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60
MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW
Sbjct: 1 MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60
Query: 61 KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120
KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR
Sbjct: 61 KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120
Query: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146
DENRSPLRQPLPCAQKSSGKDGGVWT
Sbjct: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146
>gi|56550035 colon carcinoma related protein [Homo sapiens]
Length = 326
Score = 34.7 bits (78), Expect = 0.029
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 8 PDLGGWRPAAESRGVLGTLRSAEPS--LPQNFPQTLRDLQSGGEATWMQPAKALWKSCFS 65
P LGG P + G GT +A+PS N QT +W P + +S
Sbjct: 161 PCLGGVHPDFQVTGPPGTFSAADPSPWPGHNLHQTGPAPPPAVSESWPYPLTSQVSPSYS 220
Query: 66 --STPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSG 105
+M H HP H HH RH HH H P+G
Sbjct: 221 HMHDVYMRHH---HPHAHMHH-------RHRHHHHHHHPPAG 252
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 33.1 bits (74), Expect = 0.086
Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 20/154 (12%)
Query: 6 EIPDLGGWRPAAESRGV--LGTLRSAEPSLPQNFPQTLRDLQSG---GEATWMQPAKALW 60
+ PD GG+ AA + L + +S PS P + LR+ +G G A A A
Sbjct: 36 QYPDYGGYHVAAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHG 95
Query: 61 KSCFSSTPWMSGHCP------QHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRAS 114
+ S M P HP HH HH A P S L +P P A+
Sbjct: 96 LNGGSPAAAMGYSSPADYHPHHHPHHHPHHP--AAAPSCASGLLQTLNPGPPGPAATAAA 153
Query: 115 QE----GQVR---DENRSPLRQPLPCAQKSSGKD 141
++ GQ R + R P +Q L K+ KD
Sbjct: 154 EQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKD 187
>gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo
sapiens]
Length = 582
Score = 32.7 bits (73), Expect = 0.11
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 12/38 (31%)
Query: 71 SGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
+GH P HPGHH + RH PH + G QW
Sbjct: 244 AGHLPSHPGHH-------GIARH-----PHQEDGGIQW 269
>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
sapiens]
Length = 589
Score = 32.7 bits (73), Expect = 0.11
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 12/38 (31%)
Query: 71 SGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
+GH P HPGHH + RH PH + G QW
Sbjct: 251 AGHLPSHPGHH-------GIARH-----PHQEDGGIQW 276
>gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo
sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.11
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 12/38 (31%)
Query: 71 SGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
+GH P HPGHH + RH PH + G QW
Sbjct: 251 AGHLPSHPGHH-------GIARH-----PHQEDGGIQW 276
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 32.7 bits (73), Expect = 0.11
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 56 AKALWKSCFSSTPWMSGHCP-----QHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWG 109
A A +C ++G CP H HH HH A P SHH PH P G
Sbjct: 315 AAAAGATCLERFHLVNGFCPPPHHHHHHHHHHHHHHHRAQPPQQSHHPPHHHRPQPHLG 373
>gi|239752340 PREDICTED: hypothetical protein XP_002348205 [Homo
sapiens]
Length = 218
Score = 32.0 bits (71), Expect = 0.19
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 56 AKALWKSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWG-CPRAS 114
A A W S + P+ H H HH ++ HH H P GPQ P
Sbjct: 12 AVASWGSTLYAMPFAGQSAQVHEDVHQHHQVIGGPAEGKGHHDHHHQPHGPQAPLAPGNQ 71
Query: 115 QEGQ 118
Q GQ
Sbjct: 72 QHGQ 75
>gi|239746853 PREDICTED: hypothetical protein XP_002343864 [Homo
sapiens]
Length = 218
Score = 32.0 bits (71), Expect = 0.19
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 56 AKALWKSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWG-CPRAS 114
A A W S + P+ H H HH ++ HH H P GPQ P
Sbjct: 12 AVASWGSTLYAMPFAGQSAQVHEDVHQHHQVIGGPAEGKGHHDHHHQPHGPQAPLAPGNQ 71
Query: 115 QEGQ 118
Q GQ
Sbjct: 72 QHGQ 75
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 32.0 bits (71), Expect = 0.19
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 91 PRHCSHHLPHADPSGPQWGCPRASQEGQVRDENRSPLRQPLPCAQKSSGKDGG 143
P+H PH P +G S +GQ + N+SP P K G + G
Sbjct: 732 PKHAGKKQPHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGKQKGYNHG 784
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 32.0 bits (71), Expect = 0.19
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 91 PRHCSHHLPHADPSGPQWGCPRASQEGQVRDENRSPLRQPLPCAQKSSGKDGG 143
P+H PH P +G S +GQ + N+SP P K G + G
Sbjct: 728 PKHAGKKQPHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGKQKGYNHG 780
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 31.2 bits (69), Expect = 0.33
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 73 HCPQHPGHHCHHVLLV----AVPRHCSHHLPHADPSGPQ-----WGCPRAS---QEGQVR 120
H PQH HH HH L V +P PH + PQ CP+ +
Sbjct: 629 HPPQHQHHHHHHHLSVPPPPLMPMSQPQFRPHVQTAQPQASSSRMQCPQRQGLRHNTTSQ 688
Query: 121 DENRSPLRQPLPCAQKSS 138
+ ++ P++Q P A ++S
Sbjct: 689 NVSKRPMQQMQPTAPRNS 706
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 30.8 bits (68), Expect = 0.43
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 61 KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPH 100
KS + S P H HP HH HH P H H PH
Sbjct: 985 KSLYHSGPLPPAH--HHPPHHHHHHAPPPQPHHHHAHPPH 1022
>gi|134288896 hypothetical protein LOC143684 [Homo sapiens]
Length = 339
Score = 30.0 bits (66), Expect = 0.73
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 62 SCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCS--HHLPHADPSGPQWGCPRASQEGQV 119
S SS H P+H HH HH RH S H + + P Q G + S +
Sbjct: 156 SSSSSLTEKDQHHPKHHHHHHHH-----HHRHSSSHHKISNLSPEEEQ-GLWKQSHKSSA 209
Query: 120 RDENRSPLRQPLPCAQKSSGKDGGV 144
+N +P ++P ++ S+G +
Sbjct: 210 TIQNETPKKKPKLESKPSNGDSSSI 234
>gi|4507347 TBP-associated factor 2 [Homo sapiens]
Length = 1199
Score = 29.6 bits (65), Expect = 0.95
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 1 MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATW-------M 53
ML P L +RPA+ ++ + S P PQ +L G M
Sbjct: 1064 MLERPSTPGLSKYRPASSRSALIPQHSAGCDSTPTTKPQWSLELARKGTGKEQAPLEMSM 1123
Query: 54 QPAKALWKSCFSSTPWMSGHCPQHPGHHCHH 84
PA + S F+ S H H HH H
Sbjct: 1124 HPAASAPLSVFTKESTASKHSDHHHHHHHEH 1154
>gi|239756303 PREDICTED: hypothetical protein [Homo sapiens]
Length = 232
Score = 29.3 bits (64), Expect = 1.2
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 5 AEIPDLGGWRPAAESRGVLGTLRSAEPSLPQN 36
AE P G WR A SRG G RS +P PQ+
Sbjct: 188 AEEPARGAWRVA--SRGETGLARSGDPHRPQS 217
>gi|168823435 hypothetical protein LOC79747 [Homo sapiens]
Length = 1667
Score = 29.3 bits (64), Expect = 1.2
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 80 HHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVRDE 122
H C H +LV R C P P P W R +E + DE
Sbjct: 451 HICSHPVLVTRSRSCPLVAPPKPPPLPPWKLIRQKKETVITDE 493
>gi|42263098 Sp6 transcription factor [Homo sapiens]
Length = 376
Score = 29.3 bits (64), Expect = 1.2
Identities = 38/157 (24%), Positives = 51/157 (32%), Gaps = 21/157 (13%)
Query: 4 GAEIPDLGGWR-PAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPA-----K 57
G E+ G+ P A SR L S P P F + L+ S +W +P
Sbjct: 58 GPEVDFSQGYELPGASSRVTCEDLESDSPLAPGPFSKLLQPDMSHHYESWFRPTHPGAED 117
Query: 58 ALWKSCFSSTPWM-------SGHCPQHP--------GHHCHHVLLVAVPRHCSHHLPHAD 102
W T WM + P HP G+ H L P +HHL A
Sbjct: 118 GSWWDLHPGTSWMDLPHTQGALTSPGHPGALQAGLGGYVGDHQLCAPPPHPHAHHLLPAA 177
Query: 103 PSGPQWGCPRASQEGQVRDENRSPLRQPLPCAQKSSG 139
G P ++ +V L L A + G
Sbjct: 178 GGQHLLGPPDGAKALEVAAPESQGLDSSLDGAARPKG 214
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 29.3 bits (64), Expect = 1.2
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 73 HCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGP 106
H HP HH HH A H HH P P P
Sbjct: 139 HHHHHPHHHHHHH--AAAHHHHHHHPPQPPPPPP 170
>gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo
sapiens]
Length = 474
Score = 28.9 bits (63), Expect = 1.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 78 PGHHCHHVLLVAVPRHCSHHLPHADPSGP 106
PG H+ LVAVP H SH L D P
Sbjct: 126 PGFQALHIGLVAVPTHHSHPLSLGDGPAP 154
>gi|169204993 PREDICTED: hypothetical protein LOC100130711 [Homo
sapiens]
Length = 168
Score = 28.9 bits (63), Expect = 1.6
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 52 WMQPAKALWKSCFSSTPWMSGHCPQH---PGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
W P L F+STP ++ P H H PRH + P A+ P+
Sbjct: 25 WKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRS-----PRHRASSGPVANQDSPKD 79
Query: 109 GCPRASQEGQVRDENRSPLRQP 130
G P ++ D+ R P QP
Sbjct: 80 GDPASAPAAPAPDQMRLPAGQP 101
>gi|169205515 PREDICTED: hypothetical protein LOC100130711 [Homo
sapiens]
Length = 168
Score = 28.9 bits (63), Expect = 1.6
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 52 WMQPAKALWKSCFSSTPWMSGHCPQH---PGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
W P L F+STP ++ P H H PRH + P A+ P+
Sbjct: 25 WKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRS-----PRHRASSGPVANQDSPKD 79
Query: 109 GCPRASQEGQVRDENRSPLRQP 130
G P ++ D+ R P QP
Sbjct: 80 GDPASAPAAPAPDQMRLPAGQP 101
>gi|169204464 PREDICTED: hypothetical protein LOC100130711 [Homo
sapiens]
Length = 168
Score = 28.9 bits (63), Expect = 1.6
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 52 WMQPAKALWKSCFSSTPWMSGHCPQH---PGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
W P L F+STP ++ P H H PRH + P A+ P+
Sbjct: 25 WKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRS-----PRHRASSGPVANQDSPKD 79
Query: 109 GCPRASQEGQVRDENRSPLRQP 130
G P ++ D+ R P QP
Sbjct: 80 GDPASAPAAPAPDQMRLPAGQP 101
>gi|55749480 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 28.5 bits (62), Expect = 2.1
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 73 HCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVRDENRSPLRQPLP 132
H PGHH A P H PH + GP RA+++G LP
Sbjct: 154 HRDMQPGHH--ETSTPAGPSQADLHTPHTEDGGPS-ATERAAEDG---------ASSQLP 201
Query: 133 CAQKSSGKD 141
A+ S +D
Sbjct: 202 AAEGSGEQD 210
>gi|29568086 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 28.5 bits (62), Expect = 2.1
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 73 HCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVRDENRSPLRQPLP 132
H PGHH A P H PH + GP RA+++G LP
Sbjct: 154 HRDMQPGHH--ETSTPAGPSQADLHTPHTEDGGPS-ATERAAEDG---------ASSQLP 201
Query: 133 CAQKSSGKD 141
A+ S +D
Sbjct: 202 AAEGSGEQD 210
>gi|89886261 histidine rich carboxyl terminus 1 [Homo sapiens]
Length = 115
Score = 28.5 bits (62), Expect = 2.1
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 68 PWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPH 100
P H P HH HH PRH HHL H
Sbjct: 76 PGHVSHVPNVGLHHHHH------PRHTPHHLHH 102
>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
isoform 1 [Homo sapiens]
Length = 2377
Score = 28.1 bits (61), Expect = 2.8
Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 22/98 (22%)
Query: 47 GGEATWMQPAKALWKSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGP 106
GG+ T QP+ SC S +S H H HH HH +HL + P
Sbjct: 472 GGQET--QPSS----SCSRSHRRLSVHHLVHHHHHHHH----------HYHLGNGTLRAP 515
Query: 107 QWGCPRASQEGQVRDENRS-PLRQPLPCAQKSSGKDGG 143
RAS E Q RD N S L P P SG G
Sbjct: 516 -----RASPEIQDRDANGSRRLMLPPPSTPALSGAPPG 548
>gi|41349446 stromal interaction molecule 2 [Homo sapiens]
Length = 833
Score = 28.1 bits (61), Expect = 2.8
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 9/36 (25%)
Query: 70 MSGHCPQHPGH--HCHHVLLVAVPRHCSHHLPHADP 103
++ H P HP H H HH P+H H LP DP
Sbjct: 618 LAPHAP-HPSHPRHPHH------PQHTPHSLPSPDP 646
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,406,900
Number of Sequences: 37866
Number of extensions: 380394
Number of successful extensions: 1244
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1195
Number of HSP's gapped (non-prelim): 68
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.