Guide to the Human Genome
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Name: TAF2 Sequence: fasta or formatted (1199aa) NCBI GI: 4507347
Description:

TBP-associated factor 2

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         71           3
 C cysteine            2.2         26           2
 D aspartate           4.6         55           1
 E glutamate           6.1         73           3
 F phenylalanine       4.9         59           2
 G glycine             3.8         45           3
 H histidine           4.3         51           7
 I isoleucine          4.8         58           2
 K lysine              7.2         86           6
 L leucine             9.8        117           2
 M methionine          3.3         39           1
 N asparagine          4.9         59           2
 P proline             5.4         65           2
 Q glutamine           3.6         43           2
 R arginine            4.3         52           2
 S serine              8.8        106           3
 T threonine           4.9         59           2
 V valine              6.5         78           2
 W tryptophan          1.4         17           1
 Y tyrosine            3.3         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBP-associated factor 2 
GPATCH1               0.010   G patch domain containing 1 
NPEPPS                0.009   aminopeptidase puromycin sensitive 
ERAP2                 0.008   endoplasmic reticulum aminopeptidase 2 
ERAP2                 0.008   endoplasmic reticulum aminopeptidase 2 
PRPF4B                0.008   serine/threonine-protein kinase PRP4K 
TOP1                  0.008   DNA topoisomerase I 
FAM76B                0.007   hypothetical protein LOC143684 
C10orf140             0.007   hypothetical protein LOC387640 
ERAP1                 0.007   type 1 tumor necrosis factor receptor shedding amino...
ERAP1                 0.007   type 1 tumor necrosis factor receptor shedding amino...
CCNT1                 0.007   cyclin T1 
NCAN                  0.007   chondroitin sulfate proteoglycan 3 
DYRK1A                0.007   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.007   dual-specificity tyrosine-(Y)-phosphorylation regula...
DLGAP3                0.007   discs, large (Drosophila) homolog-associated protei...
ENPEP                 0.007   glutamyl aminopeptidase 
OTX1                  0.007   orthodenticle homeobox 1 
LNPEP                 0.007   leucyl/cystinyl aminopeptidase isoform 1 
LNPEP                 0.007   leucyl/cystinyl aminopeptidase isoform 2 
NUFIP2                0.006   nuclear fragile X mental retardation protein interac...
MLLT10                0.006   myeloid/lymphoid or mixed-lineage leukemia transloca...
MLLT10                0.006   myeloid/lymphoid or mixed-lineage leukemia translocat...
INO80B                0.006   high mobility group AT-hook 1-like 4 
SLC39A6               0.006   solute carrier family 39 (zinc transporter), member...
BRD9                  0.006   bromodomain containing 9 isoform 1 
NLK                   0.005   nemo like kinase 
RBBP6                 0.005   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.005   retinoblastoma-binding protein 6 isoform 1 
C1orf35               0.005   hypothetical protein LOC79169 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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