SDC1 25022

Name: SDC1	Sequence: fasta or formatted (310aa)		NCBI GI: 29568086
Description: syndecan 1 precursor		Referenced in: Protein Glycosylation
Other entries for this name: alt mRNA [310aa] syndecan 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.9 37 2 C cysteine 0.6 2 1 D aspartate 5.2 16 2 E glutamate 8.7 27 2 F phenylalanine 1.9 6 1 G glycine 9.7 30 2 H histidine 2.3 7 2 I isoleucine 1.6 5 1 K lysine 2.9 9 3 L leucine 8.7 27 2 M methionine 1.3 4 1 N asparagine 1.6 5 1 P proline 8.7 27 2 Q glutamine 6.8 21 2 R arginine 3.5 11 2 S serine 7.4 23 2 T threonine 10.6 33 3 V valine 4.2 13 2 W tryptophan 1.0 3 1 Y tyrosine 1.3 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 syndecan 1 precursor SDC1 1.000 syndecan 1 precursor SDC3 0.147 syndecan 3 SDC2 0.073 syndecan 2 precursor SDC4 0.068 syndecan 4 precursor NACA 0.040 nascent polypeptide-associated complex alpha subuni... LOC100294236 0.040 PREDICTED: similar to diffuse panbronchiolitis crit... DPCR1 0.038 diffuse panbronchiolitis critical region 1 protein ... MUC12 0.038 PREDICTED: mucin 12 MUC12 0.037 PREDICTED: mucin 12, cell surface associated CD68 0.037 CD68 antigen isoform A MUC2 0.037 mucin 2 precursor LOC100294335 0.033 PREDICTED: similar to c114 SLIT-like testicular pro... LOC100294335 0.033 PREDICTED: similar to c114 SLIT-like testicular pro... LRRC37A2 0.033 c114 SLIT-like testicular protein LRRC37A 0.033 leucine rich repeat containing 37A PRG4 0.033 proteoglycan 4 isoform D PRG4 0.033 proteoglycan 4 isoform C PRG4 0.033 proteoglycan 4 isoform B PRG4 0.033 proteoglycan 4 isoform A BASP1 0.033 brain abundant, membrane attached signal protein 1 [... MUC17 0.032 mucin 17 CHAF1B 0.032 chromatin assembly factor 1 subunit B MUC7 0.032 mucin 7, secreted precursor MUC7 0.032 mucin 7, secreted precursor MUC7 0.032 mucin 7, secreted precursor LRRC37A3 0.028 leucine rich repeat containing 37, member A3 LOC100294420 0.028 PREDICTED: similar to mucin 2 LOC100294501 0.028 PREDICTED: hypothetical protein LOC729792 0.027 PREDICTED: hypothetical protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.