Guide to the Human Genome
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Name: SDC1 Sequence: fasta or formatted (310aa) NCBI GI: 29568086
Description:

syndecan 1 precursor

Referenced in:

Protein Glycosylation

Other entries for this name:
alt mRNA [310aa] syndecan 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         37           2
 C cysteine            0.6          2           1
 D aspartate           5.2         16           2
 E glutamate           8.7         27           2
 F phenylalanine       1.9          6           1
 G glycine             9.7         30           2
 H histidine           2.3          7           2
 I isoleucine          1.6          5           1
 K lysine              2.9          9           3
 L leucine             8.7         27           2
 M methionine          1.3          4           1
 N asparagine          1.6          5           1
 P proline             8.7         27           2
 Q glutamine           6.8         21           2
 R arginine            3.5         11           2
 S serine              7.4         23           2
 T threonine          10.6         33           3
 V valine              4.2         13           2
 W tryptophan          1.0          3           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   syndecan 1 precursor 
SDC1                  1.000   syndecan 1 precursor 
SDC3                  0.147   syndecan 3 
SDC2                  0.073   syndecan 2 precursor 
SDC4                  0.068   syndecan 4 precursor 
NACA                  0.040   nascent polypeptide-associated complex alpha subuni...
LOC100294236          0.040   PREDICTED: similar to diffuse panbronchiolitis crit...
DPCR1                 0.038   diffuse panbronchiolitis critical region 1 protein ...
MUC12                 0.038   PREDICTED: mucin 12 
MUC12                 0.037   PREDICTED: mucin 12, cell surface associated 
CD68                  0.037   CD68 antigen isoform A 
MUC2                  0.037   mucin 2 precursor 
LOC100294335          0.033   PREDICTED: similar to c114 SLIT-like testicular pro...
LOC100294335          0.033   PREDICTED: similar to c114 SLIT-like testicular pro...
LRRC37A2              0.033   c114 SLIT-like testicular protein 
LRRC37A               0.033   leucine rich repeat containing 37A 
PRG4                  0.033   proteoglycan 4 isoform D 
PRG4                  0.033   proteoglycan 4 isoform C 
PRG4                  0.033   proteoglycan 4 isoform B 
PRG4                  0.033   proteoglycan 4 isoform A 
BASP1                 0.033   brain abundant, membrane attached signal protein 1 [...
MUC17                 0.032   mucin 17 
CHAF1B                0.032   chromatin assembly factor 1 subunit B 
MUC7                  0.032   mucin 7, secreted precursor 
MUC7                  0.032   mucin 7, secreted precursor 
MUC7                  0.032   mucin 7, secreted precursor 
LRRC37A3              0.028   leucine rich repeat containing 37, member A3 
LOC100294420          0.028   PREDICTED: similar to mucin 2 
LOC100294501          0.028   PREDICTED: hypothetical protein 
LOC729792             0.027   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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