Guide to the Human Genome
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Name: SP6 Sequence: fasta or formatted (376aa) NCBI GI: 42263098
Description:

Sp6 transcription factor

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         36           2
 C cysteine            3.5         13           1
 D aspartate           4.5         17           1
 E glutamate           5.6         21           2
 F phenylalanine       2.1          8           1
 G glycine            12.2         46           2
 H histidine           6.9         26           2
 I isoleucine          0.3          1           1
 K lysine              4.8         18           3
 L leucine             9.6         36           2
 M methionine          1.3          5           1
 N asparagine          1.1          4           1
 P proline            10.6         40           3
 Q glutamine           4.3         16           1
 R arginine            4.5         17           2
 S serine              8.5         32           2
 T threonine           4.3         16           1
 V valine              3.2         12           1
 W tryptophan          1.6          6           2
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Sp6 transcription factor 
SP8                   0.289   Sp8 transcription factor isoform 1 
SP8                   0.289   Sp8 transcription factor isoform 2 
SP7                   0.268   osterix 
SP9                   0.267   Sp9 transcription factor homolog 
SP5                   0.219   Sp5 transcription factor 
SP3                   0.195   Sp3 transcription factor isoform 2 
SP3                   0.195   Sp3 transcription factor isoform 1 
SP4                   0.190   Sp4 transcription factor 
SP1                   0.187   Sp1 transcription factor isoform a 
SP1                   0.187   Sp1 transcription factor isoform b 
SP2                   0.173   Sp2 transcription factor 
KLF16                 0.134   BTE-binding protein 4 
KLF2                  0.131   Kruppel-like factor 
KLF13                 0.131   Kruppel-like factor 13 
KLF14                 0.130   Kruppel-like factor 14 
KLF10                 0.127   Kruppel-like factor 10 isoform b 
KLF10                 0.127   Kruppel-like factor 10 isoform a 
KLF1                  0.127   Kruppel-like factor 1 (erythroid) 
KLF15                 0.127   Kruppel-like factor 15 
KLF5                  0.125   Kruppel-like factor 5 
KLF11                 0.123   Kruppel-like factor 11 
KLF9                  0.121   Kruppel-like factor 9 
KLF6                  0.120   Kruppel-like factor 6 isoform A 
KLF7                  0.117   Kruppel-like factor 7 (ubiquitous) 
KLF17                 0.117   zinc finger protein 393 
KLF4                  0.117   Kruppel-like factor 4 (gut) 
KLF3                  0.115   Kruppel-like factor 3 (basic) 
KLF12                 0.112   Kruppel-like factor 12 
KLF8                  0.108   Kruppel-like factor 8 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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