Guide to the Human Genome
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Name: LOC100292993 Sequence: fasta or formatted (232aa) NCBI GI: 239756303
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         25           3
 C cysteine            2.6          6           1
 D aspartate           2.6          6           1
 E glutamate           8.2         19           2
 F phenylalanine       1.3          3           1
 G glycine            15.5         36           3
 H histidine           1.3          3           1
 I isoleucine          0.0          0           0
 K lysine              2.2          5           1
 L leucine             5.6         13           3
 M methionine          1.3          3           1
 N asparagine          1.3          3           1
 P proline             9.1         21           2
 Q glutamine           3.4          8           2
 R arginine           19.0         44           4
 S serine              6.9         16           3
 T threonine           3.4          8           1
 V valine              3.4          8           1
 W tryptophan          1.3          3           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FLJ31945              0.044   PREDICTED: hypothetical protein 
FLJ31945              0.044   PREDICTED: hypothetical protein 
LOC100293604          0.041   PREDICTED: hypothetical protein 
LOC100287837          0.041   PREDICTED: hypothetical protein XP_002343157 
LOC100130128          0.039   PREDICTED: hypothetical protein 
LOC100130128          0.037   PREDICTED: hypothetical protein 
LOC100130128          0.037   PREDICTED: hypothetical protein 
COL1A1                0.037   alpha 1 type I collagen preproprotein 
LOC100289721          0.031   PREDICTED: hypothetical protein XP_002347280 
LOC100127891          0.031   PREDICTED: similar to hCG2042508 
LOC100127891          0.031   PREDICTED: similar to hCG2042508 
LOC100127891          0.031   PREDICTED: similar to hCG2042508 
LOC100292082          0.026   PREDICTED: hypothetical protein XP_002345881 
NKX1-2                0.026   PREDICTED: NK1 homeobox 2 
LOC728767             0.026   PREDICTED: hypothetical protein 
NKX1-2                0.026   PREDICTED: NK1 homeobox 2 
LOC728767             0.026   PREDICTED: hypothetical protein 
NKX1-2                0.026   PREDICTED: NK1 homeobox 2 
LOC100130503          0.026   PREDICTED: hypothetical protein 
LOC100292062          0.026   PREDICTED: hypothetical protein XP_002346314 
ZNF469                0.026   zinc finger protein 469 
LOC100130503          0.024   PREDICTED: hypothetical protein 
FLJ37078              0.024   hypothetical protein LOC222183 
LOC100292370          0.024   PREDICTED: hypothetical protein 
SRRM2                 0.024   splicing coactivator subunit SRm300 
LOC100130503          0.022   PREDICTED: hypothetical protein 
LOC100291878          0.022   PREDICTED: similar to RIKEN cDNA C230030N03 
COL3A1                0.022   collagen type III alpha 1 preproprotein 
LOC100128398          0.022   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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