Guide to the Human Genome
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Name: LOC100289046 Sequence: fasta or formatted (218aa) NCBI GI: 239746853
Description:

PREDICTED: hypothetical protein XP_002343864

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         27           2
 C cysteine            2.3          5           1
 D aspartate           4.6         10           1
 E glutamate           8.7         19           2
 F phenylalanine       0.9          2           1
 G glycine            11.9         26           2
 H histidine           8.7         19           3
 I isoleucine          0.9          2           1
 K lysine              2.3          5           1
 L leucine             4.1          9           1
 M methionine          1.4          3           1
 N asparagine          0.9          2           1
 P proline             6.0         13           2
 Q glutamine          11.9         26           2
 R arginine            2.8          6           1
 S serine              4.1          9           1
 T threonine           1.8          4           1
 V valine             11.0         24           3
 W tryptophan          1.8          4           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343864 
LOC100289845          1.000   PREDICTED: hypothetical protein XP_002348205 
LOC100292187          0.888   PREDICTED: hypothetical protein 
LOC100292515          0.055   PREDICTED: hypothetical protein 
LOC100289910          0.055   PREDICTED: hypothetical protein XP_002347211 
LOC100287264          0.055   PREDICTED: hypothetical protein XP_002343075 
LOC100291688          0.039   PREDICTED: hypothetical protein XP_002345241 
LOC100290054          0.039   PREDICTED: hypothetical protein XP_002348009 
LOC100287338          0.039   PREDICTED: hypothetical protein XP_002343730 
LOC100292013          0.034   PREDICTED: similar to LMARRLC1A 
LOC100287831          0.034   PREDICTED: similar to LMARRLC1A 
LOC100287831          0.034   PREDICTED: hypothetical protein XP_002343735 
HOXA1                 0.025   homeobox A1 isoform a 
HOXA1                 0.025   homeobox A1 isoform b 
LOC100292716          0.023   PREDICTED: similar to pseudoautosomal GTP-binding p...
FOXG1                 0.021   forkhead box G1 
FUSSEL18              0.021   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.021   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.021   PREDICTED: functional smad suppressing element 18 [...
MAFB                  0.018   transcription factor MAFB 
CACNA1A               0.018   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.018   calcium channel, alpha 1A subunit isoform 3 
FOXB2                 0.018   forkhead box B2 
DYRK1A                0.018   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.018   dual-specificity tyrosine-(Y)-phosphorylation regula...
NLK                   0.018   nemo like kinase 
DLX6                  0.016   distal-less homeobox 6 
GSX2                  0.016   GS homeobox 2 
LOC100293279          0.016   PREDICTED: hypothetical protein 
LOC100290066          0.016   PREDICTED: hypothetical protein XP_002347408 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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