Guide to the Human Genome
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Name: STIM2 Sequence: fasta or formatted (833aa) NCBI GI: 41349446
Description:

stromal interaction molecule 2

Referenced in:

Calcium and TRP Cation Channels
Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         70           4
 C cysteine            1.9         16           1
 D aspartate           5.0         42           3
 E glutamate           8.3         69           5
 F phenylalanine       2.2         18           1
 G glycine             4.8         40           2
 H histidine           3.6         30           2
 I isoleucine          4.3         36           1
 K lysine              6.5         54           3
 L leucine             9.0         75           2
 M methionine          2.2         18           2
 N asparagine          2.5         21           2
 P proline             7.6         63           2
 Q glutamine           4.2         35           2
 R arginine            6.7         56           4
 S serine             10.3         86           3
 T threonine           4.1         34           2
 V valine              5.0         42           2
 W tryptophan          1.8         15           1
 Y tyrosine            1.6         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stromal interaction molecule 2 
STIM1                 0.330   stromal interaction molecule 1 precursor 
CCDC157               0.015   coiled-coil domain containing 157 
LOC440243             0.015   PREDICTED: Putative golgin subfamily A member 6-lik...
LUZP1                 0.014   leucine zipper protein 1 
LUZP1                 0.014   leucine zipper protein 1 
C6orf174              0.014   hypothetical protein LOC387104 
LOC645202             0.014   PREDICTED: hypothetical protein LOC645202 
LOC283685             0.013   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH2                  0.013   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.013   myosin, heavy chain 2, skeletal muscle, adult [Homo...
GOLGA4                0.013   golgi autoantigen, golgin subfamily a, 4 
CEP164                0.013   centrosomal protein 164kDa 
LAMB1                 0.012   laminin, beta 1 precursor 
PLEC1                 0.012   plectin 1 isoform 11 
PLEC1                 0.012   plectin 1 isoform 10 
PLEC1                 0.012   plectin 1 isoform 8 
PLEC1                 0.012   plectin 1 isoform 7 
PLEC1                 0.012   plectin 1 isoform 6 
PLEC1                 0.012   plectin 1 isoform 3 
PLEC1                 0.012   plectin 1 isoform 2 
PLEC1                 0.012   plectin 1 isoform 1 
ROCK1                 0.011   Rho-associated, coiled-coil containing protein kinase...
AKAP9                 0.011   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.011   A-kinase anchor protein 9 isoform 3 
C14orf145             0.011   hypothetical protein LOC145508 
MYH4                  0.011   myosin, heavy polypeptide 4, skeletal muscle 
LOC727832             0.011   golgi autoantigen, golgin subfamily a-like 
MYH1                  0.011   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH7                  0.011   myosin, heavy chain 7, cardiac muscle, beta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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