Guide to the Human Genome
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Name: LOC100290066 Sequence: fasta or formatted (146aa) NCBI GI: 239750371
Description:

PREDICTED: hypothetical protein XP_002347408

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         12           2
 C cysteine            4.1          6           1
 D aspartate           3.4          5           1
 E glutamate           4.1          6           1
 F phenylalanine       1.4          2           1
 G glycine            10.3         15           2
 H histidine           6.8         10           2
 I isoleucine          0.7          1           1
 K lysine              2.7          4           1
 L leucine             8.9         13           2
 M methionine          2.1          3           1
 N asparagine          1.4          2           1
 P proline            11.6         17           1
 Q glutamine           6.8         10           1
 R arginine            6.2          9           1
 S serine              9.6         14           2
 T threonine           3.4          5           1
 V valine              4.1          6           1
 W tryptophan          4.1          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347408 
LOC100293279          1.000   PREDICTED: hypothetical protein 
LOC100288856          1.000   PREDICTED: hypothetical protein XP_002343236 
VGLL3                 0.033   colon carcinoma related protein 
CDX2                  0.027   caudal type homeobox 2 
LOC100291688          0.027   PREDICTED: hypothetical protein XP_002345241 
LOC100290054          0.027   PREDICTED: hypothetical protein XP_002348009 
LOC100287338          0.027   PREDICTED: hypothetical protein XP_002343730 
C10orf140             0.027   hypothetical protein LOC387640 
LOC100289845          0.023   PREDICTED: hypothetical protein XP_002348205 
LOC100289046          0.023   PREDICTED: hypothetical protein XP_002343864 
ILF3                  0.023   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.023   interleukin enhancer binding factor 3 isoform a [Hom...
RBM33                 0.020   RNA binding motif protein 33 
SHANK1                0.020   SH3 and multiple ankyrin repeat domains 1 
FAM76B                0.017   hypothetical protein LOC143684 
TAF2                  0.017   TBP-associated factor 2 
LOC100292993          0.013   PREDICTED: hypothetical protein 
C6orf103              0.013   hypothetical protein LOC79747 
SP6                   0.013   Sp6 transcription factor 
FOXB2                 0.013   forkhead box B2 
LOC100291952          0.013   PREDICTED: hypothetical protein XP_002344992 
LOC100130711          0.013   PREDICTED: hypothetical protein LOC100130711 
LOC100130711          0.013   PREDICTED: hypothetical protein LOC100130711 
LOC100130711          0.013   PREDICTED: hypothetical protein LOC100130711 
SDC1                  0.010   syndecan 1 precursor 
SDC1                  0.010   syndecan 1 precursor 
HRCT1                 0.010   histidine rich carboxyl terminus 1 
CACNA1G               0.010   voltage-dependent calcium channel alpha 1G subunit i...
STIM2                 0.010   stromal interaction molecule 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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