Guide to the Human Genome
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Name: LOC100291735 Sequence: fasta or formatted (238aa) NCBI GI: 239755820
Description:

PREDICTED: similar to keratin 86, partial

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         20           2
 C cysteine            6.3         15           1
 D aspartate           2.9          7           1
 E glutamate           7.1         17           2
 F phenylalanine       1.3          3           1
 G glycine             9.7         23           3
 H histidine           2.5          6           2
 I isoleucine          3.8          9           2
 K lysine              3.8          9           1
 L leucine            10.1         24           2
 M methionine          1.3          3           1
 N asparagine          2.5          6           1
 P proline             5.5         13           2
 Q glutamine           5.5         13           2
 R arginine            4.2         10           2
 S serine             10.1         24           3
 T threonine           5.5         13           2
 V valine              7.6         18           2
 W tryptophan          0.8          2           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to keratin 86, partial 
KRT83                 0.585   keratin 83 
KRT81                 0.559   keratin, hair, basic, 1 
LOC100293351          0.410   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.410   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.410   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.410   keratin 86 
KRT85                 0.341   keratin 85 
KRT82                 0.285   keratin 82 
KRT84                 0.281   keratin, hair, basic, 4 
KRT7                  0.199   keratin 7 
KRT75                 0.192   keratin 75 
KRT5                  0.190   keratin 5 
KRT76                 0.188   keratin 76 
KRT8                  0.184   keratin 8 
KRT6B                 0.179   keratin 6B 
KRT73                 0.177   keratin 73 
KRT6A                 0.177   keratin 6A 
KRT6C                 0.177   keratin 6C 
KRT3                  0.168   keratin 3 
KRT78                 0.162   keratin 5b 
KRT71                 0.162   keratin 71 
KRT74                 0.162   keratin 6 irs4 
KRT1                  0.160   keratin 1 
KRT4                  0.160   keratin 4 
KRT2                  0.158   keratin 2 
KRT72                 0.149   keratin 72 isoform 1 
KRT80                 0.149   keratin 80 isoform a 
KRT72                 0.149   keratin 72 isoform 1 
KRT80                 0.149   keratin 80 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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