Guide to the Human Genome
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Search of human proteins with 239754674

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
         (480 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]           996   0.0  
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]          822   0.0  
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]          822   0.0  
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]          822   0.0  
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       67   4e-11
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    67   5e-11
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    67   5e-11
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    67   5e-11
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    63   7e-10
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    63   7e-10
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    63   7e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      61   2e-09
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                61   3e-09
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      60   3e-09
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          60   4e-09
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      59   7e-09
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     59   1e-08
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho...    58   2e-08
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    57   3e-08
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...    57   3e-08
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]            57   3e-08
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       57   4e-08
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       57   4e-08
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p...    57   5e-08
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    57   5e-08
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    56   6e-08
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        56   6e-08
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre...    56   8e-08
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                55   2e-07
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    55   2e-07

>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score =  996 bits (2574), Expect = 0.0
 Identities = 480/480 (100%), Positives = 480/480 (100%)

Query: 1   MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
           MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1   MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60

Query: 61  WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
           WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61  WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120

Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
           RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180

Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
           PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240

Query: 241 RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR 300
           RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR
Sbjct: 241 RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR 300

Query: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
           QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG
Sbjct: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360

Query: 361 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
           PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT
Sbjct: 361 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420

Query: 421 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 480
           RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 421 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 480


>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score =  822 bits (2124), Expect = 0.0
 Identities = 415/480 (86%), Positives = 420/480 (87%), Gaps = 20/480 (4%)

Query: 1   MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
           MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1   MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60

Query: 61  WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
           WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61  WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120

Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
           RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180

Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
           PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR       EG    PR R+ + 
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREG----PRGRAESR 236

Query: 241 RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR 300
              PA  P  L     + +   P P    G      RAPG   GR P    R   P  A 
Sbjct: 237 GSGPAQ-PAHLPLPGPAHSPAPPAPELREG------RAPGSTAGRRP----RPREPQAAE 285

Query: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
           +     SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG
Sbjct: 286 E-----SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 340

Query: 361 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
           PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT
Sbjct: 341 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 400

Query: 421 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 480
           RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 401 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460


>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score =  822 bits (2124), Expect = 0.0
 Identities = 415/480 (86%), Positives = 420/480 (87%), Gaps = 20/480 (4%)

Query: 1   MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
           MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1   MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60

Query: 61  WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
           WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61  WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120

Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
           RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180

Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
           PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR       EG    PR R+ + 
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREG----PRGRAESR 236

Query: 241 RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR 300
              PA  P  L     + +   P P    G      RAPG   GR P    R   P  A 
Sbjct: 237 GSGPAQ-PAHLPLPGPAHSPAPPAPELREG------RAPGSTAGRRP----RPREPQAAE 285

Query: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
           +     SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG
Sbjct: 286 E-----SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 340

Query: 361 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
           PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT
Sbjct: 341 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 400

Query: 421 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 480
           RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 401 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460


>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score =  822 bits (2124), Expect = 0.0
 Identities = 415/480 (86%), Positives = 420/480 (87%), Gaps = 20/480 (4%)

Query: 1   MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
           MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1   MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60

Query: 61  WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
           WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61  WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120

Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
           RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180

Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
           PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR       EG    PR R+ + 
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREG----PRGRAESR 236

Query: 241 RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR 300
              PA  P  L     + +   P P    G      RAPG   GR P    R   P  A 
Sbjct: 237 GSGPAQ-PAHLPLPGPAHSPAPPAPELREG------RAPGSTAGRRP----RPREPQAAE 285

Query: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
           +     SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG
Sbjct: 286 E-----SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 340

Query: 361 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
           PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT
Sbjct: 341 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 400

Query: 421 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 480
           RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 401 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 98/359 (27%), Positives = 119/359 (33%), Gaps = 60/359 (16%)

Query: 91   PVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALL 150
            P  KGS   +G   PP P  G   P  +   GPS    + G + Q        +GL    
Sbjct: 1164 PGQKGSKGDKGEQGPPGP-TGPQGPIGQP--GPSGADGEPGPRGQ--------QGLFGQK 1212

Query: 151  LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ 210
             +  PR  P              PV L   P PP ++G  G   +  PP P     P+  
Sbjct: 1213 GDEGPRGFPG----------PPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGA 1262

Query: 211  P---GPTAPPARVREPGRA-----EGASREPRLRSRAARPPPAPGPGALSRASRSRAAGR 262
            P   GP  PP  +  PG        G + EP L      P P    G    +  S AAG 
Sbjct: 1263 PGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGP 1322

Query: 263  PGP-GFHGGEKAAAPRAPGG-----GGGRNPGALGRAAPPSRARQDAW-GLSGCATVGLR 315
            PGP G  G +       P G     G    PG  G+  PP     D   G +G       
Sbjct: 1323 PGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSP----- 1377

Query: 316  RGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG--EGTHATHGPASPPGRRHDEEV 373
             G     G S PP   G         R+  +G  GE   EG     GP  P G     + 
Sbjct: 1378 -GPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGA--PGKP 1434

Query: 374  GAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPK 432
            G   LR   G    +GL  +P P    G               M     P   G SGPK
Sbjct: 1435 GPDGLRGIPGPVGEQGLPGSPGPDGPPGP--------------MGPPGLPGLKGDSGPK 1479



 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 97/349 (27%), Positives = 115/349 (32%), Gaps = 79/349 (22%)

Query: 70   PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHP-GDHHPRH-RKNRGPSAGT 127
            P   G  G+    G +  P FP A G     GR TP  P P G   P   R  RGP   T
Sbjct: 870  PGLPGYPGRQGPKGSIGFPGFPGANGE--KGGRGTPGKPGPRGQRGPTGPRGERGPRGIT 927

Query: 128  SQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTP---- 183
             + G K                  + P  PP      G     Q P  + G K  P    
Sbjct: 928  GKPGPKGNSGG-------------DGPAGPPGERGPNGP----QGPTGFPGPKGPPGPPG 970

Query: 184  -------PRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREPG 224
                   P Q G  G + K+ PP P     P               PGP  PP     PG
Sbjct: 971  KDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPG 1030

Query: 225  RA--EGASREPRLRSRAARPPP-----------APGP-GALSRASRSRAAGRPGPGFHGG 270
             A  EG   +P       +  P            PGP GAL         G PGP    G
Sbjct: 1031 LAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPG 1090

Query: 271  EKAAAPRA-----PGGGGGRNP-------GALGRAAPPSRARQDAWGLSGCATVGLRRGD 318
            E+  A  A     PG  G + P       GA G   P   A +D  GL G   VGL    
Sbjct: 1091 ERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD--GLQG--PVGLP--- 1143

Query: 319  CDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGR 367
               AG   PP   G+        ++  +G  GE +G     GP  P G+
Sbjct: 1144 -GPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGE-QGPPGPTGPQGPIGQ 1190



 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 63/207 (30%), Positives = 78/207 (37%), Gaps = 29/207 (14%)

Query: 174  PVYLGNKPTPPRQEGSFG--GRP--KSQPPLPQETAAPAP--QPGPTAPPARVREPGRA- 226
            PV     P PP + G  G  G P  K     P +T +P P  +PGP+ PP +   PG A 
Sbjct: 1340 PVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAG 1399

Query: 227  -EGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP-GFHG-----GEKAAAPRAP 279
             EG   E   +  A    P   PG         A G+PGP G  G     GE+   P +P
Sbjct: 1400 PEGRQGEKGAKGEAGLEGP---PGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQ-GLPGSP 1455

Query: 280  GGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRF 339
            G  G   PG +G    P        GL G +     +G     G   PP   G       
Sbjct: 1456 GPDG--PPGPMGPPGLP--------GLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGL 1505

Query: 340  CRRRRRRGGGGEGEGTHATHGPASPPG 366
               +   G  GE +G     GP  PPG
Sbjct: 1506 PGPQGSSGPKGE-QGITGPSGPIGPPG 1531



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 88/331 (26%), Positives = 110/331 (33%), Gaps = 74/331 (22%)

Query: 91  PVAKGSVPSEGRATPPLPHPGDHHPRHRKNR-GPSAGTSQLGKKTQCRSLFLRTKGLCAL 149
           P  KG     G + PP P PGD   R      GP     + G +       L  KG    
Sbjct: 639 PGEKGHRGDPGPSGPPGP-PGDDGERGDDGEVGPRGLPGEPGPRG-----LLGPKGPPG- 691

Query: 150 LLELPPRPPPNLQEGGQRAIFQRPPVYLG--NKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
               PP PP      GQ      P   +G   +P PP Q+G+ G +     P PQ    P
Sbjct: 692 ----PPGPPGVTGMDGQPG----PKGNVGPQGEPGPPGQQGNPGAQGL---PGPQGAIGP 740

Query: 208 APQPGPTAPPARVREPGRAEGASREPRLRS----RAARPPPAP-------GPGALSRASR 256
             + GP   P     PG A+G    P        +  + PP P       GP  +  A  
Sbjct: 741 PGEKGPLGKPGLPGMPG-ADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADG 799

Query: 257 SRAA-------GRPG-PGFHG-----GEKAA----------APRAPGGGGGRN--PGALG 291
            R         G  G PGF G     G++             P  P G GG N  PG LG
Sbjct: 800 IRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLG 859

Query: 292 RAAPPSRARQDAWGLSG----------CATVGLRRGDCDRAGSSQPPATSGNGERCRFCR 341
              P  + +    GL G              G    + ++ G   P      G+R     
Sbjct: 860 --PPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGP 917

Query: 342 RRRRRGGGGEGE----GTHATHGPASPPGRR 368
           R  R   G  G+    G     GPA PPG R
Sbjct: 918 RGERGPRGITGKPGPKGNSGGDGPAGPPGER 948



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 70/267 (26%), Positives = 89/267 (33%), Gaps = 27/267 (10%)

Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
           P  + QE   +AI Q+          P+ L  +P P    GS G + +     PQ     
Sbjct: 537 PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGV 596

Query: 208 APQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265
              PGP   P R    G   A G   +   +        A  PG          +G PGP
Sbjct: 597 QGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGP 656

Query: 266 ----GFHGGEKAAAPRA-PGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCD 320
               G  G +    PR  PG  G R  G LG   PP        G++G       +G+  
Sbjct: 657 PGDDGERGDDGEVGPRGLPGEPGPR--GLLGPKGPPGPPGPP--GVTGMDGQPGPKGNVG 712

Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPGRRHDEEVGA 375
             G   PP   GN         +   G  GE       G     G   PPG  H  + G 
Sbjct: 713 PQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPG--HPGKEGP 770

Query: 376 AVLRAGSGEGSRRGLQLTPPPRRVHGA 402
              + G G    +G    P PR V GA
Sbjct: 771 PGEKGGQGPPGPQGPIGYPGPRGVKGA 797



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 65/231 (28%), Positives = 78/231 (33%), Gaps = 42/231 (18%)

Query: 198 PPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGAL----SR 253
           PP P+  A     PG   P  +V +PG   G    P L      P P   PG +     R
Sbjct: 470 PPGPEGPAGLPGPPGTMGPTGQVGDPGE-RGPPGRPGLPGADGLPGP---PGTMLMLPFR 525

Query: 254 ASRSRAAGRPGPGFHGGEKAA------------APRAPGGGGGRNPGALG-------RAA 294
                 AG  GP     E  A             P  P G  GR PG +G       +  
Sbjct: 526 FGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGR-PGPVGPPGSGGLKGE 584

Query: 295 PPSRARQDAWGLSGCATVGLRRGDCDRAGS----SQPPATSGNGERCRFCRRRRRRGGGG 350
           P     Q   G+ G      + G   RAGS      P  T   G+R          G  G
Sbjct: 585 PGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDR----GFDGLAGLPG 640

Query: 351 EGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG 401
           E +G     GP+ PPG   D+       R   GE   RGL   P PR + G
Sbjct: 641 E-KGHRGDPGPSGPPGPPGDDGE-----RGDDGEVGPRGLPGEPGPRGLLG 685



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 32/119 (26%), Positives = 42/119 (35%), Gaps = 37/119 (31%)

Query: 183  PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARP 242
            PP ++G  G R     P PQ ++ P  + G T P   +  PG                 P
Sbjct: 1493 PPGEQGEKGDRGL---PGPQGSSGPKGEQGITGPSGPIGPPG-----------------P 1532

Query: 243  PPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
            P  PGP                PG  G + ++ P  P G  G +PG  G   PP    Q
Sbjct: 1533 PGLPGP----------------PGPKGAKGSSGPTGPKGEAG-HPGPPGPPGPPGEVIQ 1574



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 16/50 (32%), Positives = 20/50 (40%)

Query: 174  PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREP 223
            P+     P  P   G  G +  S P  P+  A     PGP  PP  V +P
Sbjct: 1526 PIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQP 1575


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 94/359 (26%), Positives = 117/359 (32%), Gaps = 59/359 (16%)

Query: 70   PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
            P   G  G+    G    P FP A G   + G A  P P         R +RG    T +
Sbjct: 852  PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 911

Query: 130  LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP-------PVYLGNKPT 182
             G K                  + PP PP      G +     P       P      P 
Sbjct: 912  PGPKGTSGG-------------DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 958

Query: 183  PPRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREPGRA--EG 228
             P Q G  G + K+ PP P     P               PGP  PP     PG A  EG
Sbjct: 959  HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1018

Query: 229  ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN-- 286
            A  +P  +  + +  PA   G         A G   PG  GGE    P  P G  G    
Sbjct: 1019 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQG--APGLKGGEGPQGPPGPVGSPGERGS 1076

Query: 287  ---------PGALGRAAPPSRA-RQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG---- 332
                     PG  G   PP  A  + A G  G      R G     G   P   +G    
Sbjct: 1077 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1136

Query: 333  NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
            +G++       ++   G +GE     +GP  PPG +    VGA  +  G GE   RG Q
Sbjct: 1137 DGDKGEIGEPGQKGSKGDKGE-----NGPPGPPGLQ--GPVGAPGIAGGDGEPGPRGQQ 1188



 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 76/280 (27%), Positives = 96/280 (34%), Gaps = 31/280 (11%)

Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
           P  + QE   +AI Q+          P+ L  +P P    GS G + +S  P PQ     
Sbjct: 519 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 578

Query: 208 APQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265
              PGPT  P +   PG     G   EP  +           PG           G PGP
Sbjct: 579 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 638

Query: 266 ----GFHGGEKAAAPRA-PGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCD 320
               G  G +    PR  PG  G R  G LG    P    Q   G++G       +G+  
Sbjct: 639 PGDDGMRGEDGEIGPRGLPGEAGPR--GLLGPRGTPGAPGQP--GMAGVDGPPGPKGNMG 694

Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPGRRHDEEVGA 375
             G   PP   GN         +   G  GE       G     G   PPG  H  + G 
Sbjct: 695 PQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG--HPGKEGQ 752

Query: 376 AVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSN 415
           +  +   G    +G    P PR V GA     G R LK +
Sbjct: 753 SGEKGALGPPGPQGPIGYPGPRGVKGA----DGVRGLKGS 788



 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 65/234 (27%), Positives = 82/234 (35%), Gaps = 25/234 (10%)

Query: 174  PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEG 228
            P+ L   P PP ++G  G     G P   PP P+    P    GP  PP  V   G   G
Sbjct: 1208 PIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGADGPQGPPGSVGSVG-GVG 1264

Query: 229  ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGR-NP 287
               EP        P  A   G          AG PG     G K      PG  G + NP
Sbjct: 1265 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG----PPGDDGPKGNP 1320

Query: 288  GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRRR 346
            G +G    P    +   G +G   VG  +G+    G   PP  SG  G      +R    
Sbjct: 1321 GPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1378

Query: 347  GGGGEG----EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 396
              G EG    +G     G   PPG+      G    +  +G+    GL+  P P
Sbjct: 1379 AAGAEGRQGEKGAKGEAGAEGPPGK-----TGPVGPQGPAGKPGPEGLRGIPGP 1427



 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 59/204 (28%), Positives = 71/204 (34%), Gaps = 23/204 (11%)

Query: 174  PVYLGNKPTPPRQEGSFG----GRPKSQPPLPQETAAPAP--QPGPTAPPARVREPGR-- 225
            PV     P PP + G  G    G  K +   P +   P P  + GP  PP +   PG   
Sbjct: 1322 PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAG 1381

Query: 226  AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP-GFHGGEKAAAPRAPGGGGG 284
            AEG   E   +  A    P   PG          AG+PGP G  G         PG  G 
Sbjct: 1382 AEGRQGEKGAKGEAGAEGP---PGKTGPVGPQGPAGKPGPEGLRG--------IPGPVGE 1430

Query: 285  RN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRR 342
            +  PGA G+  PP         GL G       +G     G   PP   G          
Sbjct: 1431 QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGT 1490

Query: 343  RRRRGGGGEGEGTHATHGPASPPG 366
            +   G  G+G G     GP  PPG
Sbjct: 1491 QGSPGAKGDG-GIPGPAGPLGPPG 1513



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 77/281 (27%), Positives = 96/281 (34%), Gaps = 68/281 (24%)

Query: 188  GSFGGRPKSQPPLPQETAAPAPQPGPTAP---------PARVREPGRA-----------E 227
            G  G R +  P  P+  A P   PGP+           P     PGR             
Sbjct: 814  GQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFP 873

Query: 228  GASREPRLRSRAARPPPAPGPGAL----SRASRSRAAGRPGP-GFHGGEKAAAPRAPGGG 282
            GA+ E   R  A +P P    G      SR +R    G+PGP G  GG+    P  PG  
Sbjct: 874  GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARG-PTGKPGPKGTSGGD--GPPGPPGER 930

Query: 283  GGRNP----GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG------ 332
            G + P    G  G   PP    +D  GL G      +RG+    G + PP   G      
Sbjct: 931  GPQGPQGPVGFPGPKGPPGPPGKD--GLPGHPG---QRGETGFQGKTGPPGPGGVVGPQG 985

Query: 333  -NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
              GE             G  GE  H   GP  PPG +     GAA      G+   +G+ 
Sbjct: 986  PTGET------------GPIGERGHP--GPPGPPGEQ--GLPGAAGKEGAKGDPGPQGIS 1029

Query: 392  LTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPK 432
                P  + G    F G R L          P   G  GP+
Sbjct: 1030 GKDGPAGLRG----FPGERGLP----GAQGAPGLKGGEGPQ 1062



 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 67/249 (26%), Positives = 83/249 (33%), Gaps = 61/249 (24%)

Query: 153  LPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFG--GRPKSQPPLPQE-TAAPAP 209
            LP RP P           Q PP   G K  P  ++G  G  GR   Q P+     A PA 
Sbjct: 1085 LPGRPGP-----------QGPPGPAGEKGAPG-EKGPQGPAGRDGVQGPVGLPGPAGPAG 1132

Query: 210  QPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHG 269
             PG       + EPG+    S+  +  +    PP   GP                PG  G
Sbjct: 1133 SPGEDGDKGEIGEPGQK--GSKGDKGENGPPGPPGLQGPVG-------------APGIAG 1177

Query: 270  GEKAAAPRAPGGGGGR--NPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQP 327
            G+    PR   G  G+  + GA G   PP        GL G       +G+    G   P
Sbjct: 1178 GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI-----GLQGLPGPPGEKGENGDVGPMGP 1232

Query: 328  PATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSR 387
            P   G             RG     +G +   GP  PPG      VG+     G GE   
Sbjct: 1233 PGPPG------------PRG----PQGPNGADGPQGPPG-----SVGSV---GGVGEKGE 1268

Query: 388  RGLQLTPPP 396
             G    P P
Sbjct: 1269 PGEAGNPGP 1277



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 104/437 (23%), Positives = 132/437 (30%), Gaps = 116/437 (26%)

Query: 74  GDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNR-GPSAGTSQLGK 132
           G+ G     G    P  P  KG     G   PP P PGD   R      GP     + G 
Sbjct: 604 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP-PGDDGMRGEDGEIGPRGLPGEAGP 662

Query: 133 KTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGN-----KPTPPRQE 187
           +           GL      L PR  P        A    PP   GN     +P PP Q+
Sbjct: 663 R-----------GL------LGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQ 705

Query: 188 GSFG--GRPKSQPPL-------PQETAAPAPQPGPTAPPARVREPGRA--EGASREPRLR 236
           G+ G  G P  Q P+       PQ     A  PG   PP    + G++  +GA   P  +
Sbjct: 706 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 765

Query: 237 SRAARPPPA-----------------------PG----------------------PGAL 251
                P P                        PG                       G  
Sbjct: 766 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPE 825

Query: 252 SRASRSRAAGRPGPGFHGGEKA--AAPRAPGGGGGRNP-GALGRAAPPSRARQDAWGLSG 308
               R+   G PGP    GEK     P  PG  G + P G+ G    P      A G  G
Sbjct: 826 GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG-----ANGEKG 880

Query: 309 CATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRR 368
              V  + G   + G + P          R  R  R   G    +GT    GP  PPG R
Sbjct: 881 ARGVAGKPGPRGQRGPTGP----------RGSRGARGPTGKPGPKGTSGGDGPPGPPGER 930

Query: 369 HDE----EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPR 424
             +     VG    +   G   + GL   P              G+  ++ +   T  P 
Sbjct: 931 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHP--------------GQRGETGFQGKTGPPG 976

Query: 425 RSGASGPKMVADQTSGI 441
             G  GP+    +T  I
Sbjct: 977 PGGVVGPQGPTGETGPI 993



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 67/258 (25%), Positives = 83/258 (32%), Gaps = 65/258 (25%)

Query: 165 GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPG 224
           G+ A+ + P + +   P P    G  G      PP  Q    P   PG   PP R   PG
Sbjct: 441 GEPAVVE-PGMLVEGPPGPAGPAGIMG------PPGLQGPTGPPGDPGDRGPPGRPGLPG 493

Query: 225 RAEGASREP--------RLRSRAARPPPAPGPGALSRASRSRA-------------AGRP 263
            A+G    P        R     ++ P      A ++A   +A              GRP
Sbjct: 494 -ADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP 552

Query: 264 GP-------GFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRR 316
           GP       G  G      P+ P G  G  PG  G+  P  R R  A G  G       +
Sbjct: 553 GPVGGPGSSGAKGESGDPGPQGPRGVQG-PPGPTGK--PGKRGRPGADGGRGMPGEPGAK 609

Query: 317 GDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG----RRHDEE 372
           GD    G    P   G+                    G     GP  PPG    R  D E
Sbjct: 610 GDRGFDGLPGLPGDKGH-------------------RGERGPQGPPGPPGDDGMRGEDGE 650

Query: 373 VGAAVLRAGSGEGSRRGL 390
           +G    R   GE   RGL
Sbjct: 651 IGP---RGLPGEAGPRGL 665



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 53/223 (23%), Positives = 65/223 (29%), Gaps = 28/223 (12%)

Query: 94   KGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLEL 153
            KG     G+  PP P      P     RGP       G++ +  +     KG        
Sbjct: 1347 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-----KGEAGA---- 1397

Query: 154  PPRPPPNLQEGGQRAIFQRP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
               PP      G +    +P P  L   P P  ++G  G   +  PP P     P   PG
Sbjct: 1398 -EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM---GPPGLPG 1453

Query: 213  PTAPPARVREPGR----------AEGASREPRLRSRAARPPPAPG----PGALSRASRSR 258
                P    E G            E   +  R        P A G    PG         
Sbjct: 1454 LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPG 1513

Query: 259  AAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
              G PGP    G K +   A   G    PG  G   PP    Q
Sbjct: 1514 PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1556


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 94/359 (26%), Positives = 117/359 (32%), Gaps = 59/359 (16%)

Query: 70   PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
            P   G  G+    G    P FP A G   + G A  P P         R +RG    T +
Sbjct: 801  PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 860

Query: 130  LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP-------PVYLGNKPT 182
             G K                  + PP PP      G +     P       P      P 
Sbjct: 861  PGPKGTSGG-------------DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 907

Query: 183  PPRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREPGRA--EG 228
             P Q G  G + K+ PP P     P               PGP  PP     PG A  EG
Sbjct: 908  HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 967

Query: 229  ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN-- 286
            A  +P  +  + +  PA   G         A G   PG  GGE    P  P G  G    
Sbjct: 968  AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQG--APGLKGGEGPQGPPGPVGSPGERGS 1025

Query: 287  ---------PGALGRAAPPSRA-RQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG---- 332
                     PG  G   PP  A  + A G  G      R G     G   P   +G    
Sbjct: 1026 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1085

Query: 333  NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
            +G++       ++   G +GE     +GP  PPG +    VGA  +  G GE   RG Q
Sbjct: 1086 DGDKGEIGEPGQKGSKGDKGE-----NGPPGPPGLQ--GPVGAPGIAGGDGEPGPRGQQ 1137



 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 76/280 (27%), Positives = 96/280 (34%), Gaps = 31/280 (11%)

Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
           P  + QE   +AI Q+          P+ L  +P P    GS G + +S  P PQ     
Sbjct: 468 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 527

Query: 208 APQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265
              PGPT  P +   PG     G   EP  +           PG           G PGP
Sbjct: 528 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 587

Query: 266 ----GFHGGEKAAAPRA-PGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCD 320
               G  G +    PR  PG  G R  G LG    P    Q   G++G       +G+  
Sbjct: 588 PGDDGMRGEDGEIGPRGLPGEAGPR--GLLGPRGTPGAPGQP--GMAGVDGPPGPKGNMG 643

Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPGRRHDEEVGA 375
             G   PP   GN         +   G  GE       G     G   PPG  H  + G 
Sbjct: 644 PQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG--HPGKEGQ 701

Query: 376 AVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSN 415
           +  +   G    +G    P PR V GA     G R LK +
Sbjct: 702 SGEKGALGPPGPQGPIGYPGPRGVKGA----DGVRGLKGS 737



 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 65/234 (27%), Positives = 82/234 (35%), Gaps = 25/234 (10%)

Query: 174  PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEG 228
            P+ L   P PP ++G  G     G P   PP P+    P    GP  PP  V   G   G
Sbjct: 1157 PIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGADGPQGPPGSVGSVG-GVG 1213

Query: 229  ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGR-NP 287
               EP        P  A   G          AG PG     G K      PG  G + NP
Sbjct: 1214 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG----PPGDDGPKGNP 1269

Query: 288  GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRRR 346
            G +G    P    +   G +G   VG  +G+    G   PP  SG  G      +R    
Sbjct: 1270 GPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1327

Query: 347  GGGGEG----EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 396
              G EG    +G     G   PPG+      G    +  +G+    GL+  P P
Sbjct: 1328 AAGAEGRQGEKGAKGEAGAEGPPGK-----TGPVGPQGPAGKPGPEGLRGIPGP 1376



 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 59/204 (28%), Positives = 71/204 (34%), Gaps = 23/204 (11%)

Query: 174  PVYLGNKPTPPRQEGSFG----GRPKSQPPLPQETAAPAP--QPGPTAPPARVREPGR-- 225
            PV     P PP + G  G    G  K +   P +   P P  + GP  PP +   PG   
Sbjct: 1271 PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAG 1330

Query: 226  AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP-GFHGGEKAAAPRAPGGGGG 284
            AEG   E   +  A    P   PG          AG+PGP G  G         PG  G 
Sbjct: 1331 AEGRQGEKGAKGEAGAEGP---PGKTGPVGPQGPAGKPGPEGLRG--------IPGPVGE 1379

Query: 285  RN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRR 342
            +  PGA G+  PP         GL G       +G     G   PP   G          
Sbjct: 1380 QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGT 1439

Query: 343  RRRRGGGGEGEGTHATHGPASPPG 366
            +   G  G+G G     GP  PPG
Sbjct: 1440 QGSPGAKGDG-GIPGPAGPLGPPG 1462



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 77/281 (27%), Positives = 96/281 (34%), Gaps = 68/281 (24%)

Query: 188  GSFGGRPKSQPPLPQETAAPAPQPGPTAP---------PARVREPGRA-----------E 227
            G  G R +  P  P+  A P   PGP+           P     PGR             
Sbjct: 763  GQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFP 822

Query: 228  GASREPRLRSRAARPPPAPGPGAL----SRASRSRAAGRPGP-GFHGGEKAAAPRAPGGG 282
            GA+ E   R  A +P P    G      SR +R    G+PGP G  GG+    P  PG  
Sbjct: 823  GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARG-PTGKPGPKGTSGGD--GPPGPPGER 879

Query: 283  GGRNP----GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG------ 332
            G + P    G  G   PP    +D  GL G      +RG+    G + PP   G      
Sbjct: 880  GPQGPQGPVGFPGPKGPPGPPGKD--GLPGHPG---QRGETGFQGKTGPPGPGGVVGPQG 934

Query: 333  -NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
              GE             G  GE  H   GP  PPG +     GAA      G+   +G+ 
Sbjct: 935  PTGET------------GPIGERGHP--GPPGPPGEQ--GLPGAAGKEGAKGDPGPQGIS 978

Query: 392  LTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPK 432
                P  + G    F G R L          P   G  GP+
Sbjct: 979  GKDGPAGLRG----FPGERGLP----GAQGAPGLKGGEGPQ 1011



 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 67/249 (26%), Positives = 83/249 (33%), Gaps = 61/249 (24%)

Query: 153  LPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFG--GRPKSQPPLPQE-TAAPAP 209
            LP RP P           Q PP   G K  P  ++G  G  GR   Q P+     A PA 
Sbjct: 1034 LPGRPGP-----------QGPPGPAGEKGAPG-EKGPQGPAGRDGVQGPVGLPGPAGPAG 1081

Query: 210  QPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHG 269
             PG       + EPG+    S+  +  +    PP   GP                PG  G
Sbjct: 1082 SPGEDGDKGEIGEPGQK--GSKGDKGENGPPGPPGLQGPVG-------------APGIAG 1126

Query: 270  GEKAAAPRAPGGGGGR--NPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQP 327
            G+    PR   G  G+  + GA G   PP        GL G       +G+    G   P
Sbjct: 1127 GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI-----GLQGLPGPPGEKGENGDVGPMGP 1181

Query: 328  PATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSR 387
            P   G             RG     +G +   GP  PPG      VG+     G GE   
Sbjct: 1182 PGPPG------------PRG----PQGPNGADGPQGPPG-----SVGSV---GGVGEKGE 1217

Query: 388  RGLQLTPPP 396
             G    P P
Sbjct: 1218 PGEAGNPGP 1226



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 104/437 (23%), Positives = 132/437 (30%), Gaps = 116/437 (26%)

Query: 74  GDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNR-GPSAGTSQLGK 132
           G+ G     G    P  P  KG     G   PP P PGD   R      GP     + G 
Sbjct: 553 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP-PGDDGMRGEDGEIGPRGLPGEAGP 611

Query: 133 KTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGN-----KPTPPRQE 187
           +           GL      L PR  P        A    PP   GN     +P PP Q+
Sbjct: 612 R-----------GL------LGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQ 654

Query: 188 GSFG--GRPKSQPPL-------PQETAAPAPQPGPTAPPARVREPGRA--EGASREPRLR 236
           G+ G  G P  Q P+       PQ     A  PG   PP    + G++  +GA   P  +
Sbjct: 655 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 714

Query: 237 SRAARPPPA-----------------------PG----------------------PGAL 251
                P P                        PG                       G  
Sbjct: 715 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPE 774

Query: 252 SRASRSRAAGRPGPGFHGGEKA--AAPRAPGGGGGRNP-GALGRAAPPSRARQDAWGLSG 308
               R+   G PGP    GEK     P  PG  G + P G+ G    P      A G  G
Sbjct: 775 GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG-----ANGEKG 829

Query: 309 CATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRR 368
              V  + G   + G + P          R  R  R   G    +GT    GP  PPG R
Sbjct: 830 ARGVAGKPGPRGQRGPTGP----------RGSRGARGPTGKPGPKGTSGGDGPPGPPGER 879

Query: 369 HDE----EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPR 424
             +     VG    +   G   + GL   P              G+  ++ +   T  P 
Sbjct: 880 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHP--------------GQRGETGFQGKTGPPG 925

Query: 425 RSGASGPKMVADQTSGI 441
             G  GP+    +T  I
Sbjct: 926 PGGVVGPQGPTGETGPI 942



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 67/258 (25%), Positives = 83/258 (32%), Gaps = 65/258 (25%)

Query: 165 GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPG 224
           G+ A+ + P + +   P P    G  G      PP  Q    P   PG   PP R   PG
Sbjct: 390 GEPAVVE-PGMLVEGPPGPAGPAGIMG------PPGLQGPTGPPGDPGDRGPPGRPGLPG 442

Query: 225 RAEGASREP--------RLRSRAARPPPAPGPGALSRASRSRA-------------AGRP 263
            A+G    P        R     ++ P      A ++A   +A              GRP
Sbjct: 443 -ADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP 501

Query: 264 GP-------GFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRR 316
           GP       G  G      P+ P G  G  PG  G+  P  R R  A G  G       +
Sbjct: 502 GPVGGPGSSGAKGESGDPGPQGPRGVQG-PPGPTGK--PGKRGRPGADGGRGMPGEPGAK 558

Query: 317 GDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG----RRHDEE 372
           GD    G    P   G+                    G     GP  PPG    R  D E
Sbjct: 559 GDRGFDGLPGLPGDKGH-------------------RGERGPQGPPGPPGDDGMRGEDGE 599

Query: 373 VGAAVLRAGSGEGSRRGL 390
           +G    R   GE   RGL
Sbjct: 600 IGP---RGLPGEAGPRGL 614



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 53/223 (23%), Positives = 65/223 (29%), Gaps = 28/223 (12%)

Query: 94   KGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLEL 153
            KG     G+  PP P      P     RGP       G++ +  +     KG        
Sbjct: 1296 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-----KGEAGA---- 1346

Query: 154  PPRPPPNLQEGGQRAIFQRP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
               PP      G +    +P P  L   P P  ++G  G   +  PP P     P   PG
Sbjct: 1347 -EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM---GPPGLPG 1402

Query: 213  PTAPPARVREPGR----------AEGASREPRLRSRAARPPPAPG----PGALSRASRSR 258
                P    E G            E   +  R        P A G    PG         
Sbjct: 1403 LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPG 1462

Query: 259  AAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
              G PGP    G K +   A   G    PG  G   PP    Q
Sbjct: 1463 PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1505


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 94/359 (26%), Positives = 117/359 (32%), Gaps = 59/359 (16%)

Query: 70   PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
            P   G  G+    G    P FP A G   + G A  P P         R +RG    T +
Sbjct: 840  PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 899

Query: 130  LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP-------PVYLGNKPT 182
             G K                  + PP PP      G +     P       P      P 
Sbjct: 900  PGPKGTSGG-------------DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 946

Query: 183  PPRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREPGRA--EG 228
             P Q G  G + K+ PP P     P               PGP  PP     PG A  EG
Sbjct: 947  HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1006

Query: 229  ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN-- 286
            A  +P  +  + +  PA   G         A G   PG  GGE    P  P G  G    
Sbjct: 1007 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQG--APGLKGGEGPQGPPGPVGSPGERGS 1064

Query: 287  ---------PGALGRAAPPSRA-RQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG---- 332
                     PG  G   PP  A  + A G  G      R G     G   P   +G    
Sbjct: 1065 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1124

Query: 333  NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
            +G++       ++   G +GE     +GP  PPG +    VGA  +  G GE   RG Q
Sbjct: 1125 DGDKGEIGEPGQKGSKGDKGE-----NGPPGPPGLQ--GPVGAPGIAGGDGEPGPRGQQ 1176



 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 76/280 (27%), Positives = 96/280 (34%), Gaps = 31/280 (11%)

Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
           P  + QE   +AI Q+          P+ L  +P P    GS G + +S  P PQ     
Sbjct: 507 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 566

Query: 208 APQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265
              PGPT  P +   PG     G   EP  +           PG           G PGP
Sbjct: 567 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 626

Query: 266 ----GFHGGEKAAAPRA-PGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCD 320
               G  G +    PR  PG  G R  G LG    P    Q   G++G       +G+  
Sbjct: 627 PGDDGMRGEDGEIGPRGLPGEAGPR--GLLGPRGTPGAPGQP--GMAGVDGPPGPKGNMG 682

Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPGRRHDEEVGA 375
             G   PP   GN         +   G  GE       G     G   PPG  H  + G 
Sbjct: 683 PQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG--HPGKEGQ 740

Query: 376 AVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSN 415
           +  +   G    +G    P PR V GA     G R LK +
Sbjct: 741 SGEKGALGPPGPQGPIGYPGPRGVKGA----DGVRGLKGS 776



 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 65/234 (27%), Positives = 82/234 (35%), Gaps = 25/234 (10%)

Query: 174  PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEG 228
            P+ L   P PP ++G  G     G P   PP P+    P    GP  PP  V   G   G
Sbjct: 1196 PIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGADGPQGPPGSVGSVG-GVG 1252

Query: 229  ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGR-NP 287
               EP        P  A   G          AG PG     G K      PG  G + NP
Sbjct: 1253 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG----PPGDDGPKGNP 1308

Query: 288  GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRRR 346
            G +G    P    +   G +G   VG  +G+    G   PP  SG  G      +R    
Sbjct: 1309 GPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1366

Query: 347  GGGGEG----EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 396
              G EG    +G     G   PPG+      G    +  +G+    GL+  P P
Sbjct: 1367 AAGAEGRQGEKGAKGEAGAEGPPGK-----TGPVGPQGPAGKPGPEGLRGIPGP 1415



 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 59/204 (28%), Positives = 71/204 (34%), Gaps = 23/204 (11%)

Query: 174  PVYLGNKPTPPRQEGSFG----GRPKSQPPLPQETAAPAP--QPGPTAPPARVREPGR-- 225
            PV     P PP + G  G    G  K +   P +   P P  + GP  PP +   PG   
Sbjct: 1310 PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAG 1369

Query: 226  AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP-GFHGGEKAAAPRAPGGGGG 284
            AEG   E   +  A    P   PG          AG+PGP G  G         PG  G 
Sbjct: 1370 AEGRQGEKGAKGEAGAEGP---PGKTGPVGPQGPAGKPGPEGLRG--------IPGPVGE 1418

Query: 285  RN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRR 342
            +  PGA G+  PP         GL G       +G     G   PP   G          
Sbjct: 1419 QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGT 1478

Query: 343  RRRRGGGGEGEGTHATHGPASPPG 366
            +   G  G+G G     GP  PPG
Sbjct: 1479 QGSPGAKGDG-GIPGPAGPLGPPG 1501



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 77/281 (27%), Positives = 96/281 (34%), Gaps = 68/281 (24%)

Query: 188  GSFGGRPKSQPPLPQETAAPAPQPGPTAP---------PARVREPGRA-----------E 227
            G  G R +  P  P+  A P   PGP+           P     PGR             
Sbjct: 802  GQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFP 861

Query: 228  GASREPRLRSRAARPPPAPGPGAL----SRASRSRAAGRPGP-GFHGGEKAAAPRAPGGG 282
            GA+ E   R  A +P P    G      SR +R    G+PGP G  GG+    P  PG  
Sbjct: 862  GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARG-PTGKPGPKGTSGGD--GPPGPPGER 918

Query: 283  GGRNP----GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG------ 332
            G + P    G  G   PP    +D  GL G      +RG+    G + PP   G      
Sbjct: 919  GPQGPQGPVGFPGPKGPPGPPGKD--GLPGHPG---QRGETGFQGKTGPPGPGGVVGPQG 973

Query: 333  -NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
              GE             G  GE  H   GP  PPG +     GAA      G+   +G+ 
Sbjct: 974  PTGET------------GPIGERGHP--GPPGPPGEQ--GLPGAAGKEGAKGDPGPQGIS 1017

Query: 392  LTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPK 432
                P  + G    F G R L          P   G  GP+
Sbjct: 1018 GKDGPAGLRG----FPGERGLP----GAQGAPGLKGGEGPQ 1050



 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 67/249 (26%), Positives = 83/249 (33%), Gaps = 61/249 (24%)

Query: 153  LPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFG--GRPKSQPPLPQE-TAAPAP 209
            LP RP P           Q PP   G K  P  ++G  G  GR   Q P+     A PA 
Sbjct: 1073 LPGRPGP-----------QGPPGPAGEKGAPG-EKGPQGPAGRDGVQGPVGLPGPAGPAG 1120

Query: 210  QPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHG 269
             PG       + EPG+    S+  +  +    PP   GP                PG  G
Sbjct: 1121 SPGEDGDKGEIGEPGQK--GSKGDKGENGPPGPPGLQGPVG-------------APGIAG 1165

Query: 270  GEKAAAPRAPGGGGGR--NPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQP 327
            G+    PR   G  G+  + GA G   PP        GL G       +G+    G   P
Sbjct: 1166 GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI-----GLQGLPGPPGEKGENGDVGPMGP 1220

Query: 328  PATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSR 387
            P   G             RG     +G +   GP  PPG      VG+     G GE   
Sbjct: 1221 PGPPG------------PRG----PQGPNGADGPQGPPG-----SVGSV---GGVGEKGE 1256

Query: 388  RGLQLTPPP 396
             G    P P
Sbjct: 1257 PGEAGNPGP 1265



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 104/437 (23%), Positives = 132/437 (30%), Gaps = 116/437 (26%)

Query: 74  GDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNR-GPSAGTSQLGK 132
           G+ G     G    P  P  KG     G   PP P PGD   R      GP     + G 
Sbjct: 592 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP-PGDDGMRGEDGEIGPRGLPGEAGP 650

Query: 133 KTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGN-----KPTPPRQE 187
           +           GL      L PR  P        A    PP   GN     +P PP Q+
Sbjct: 651 R-----------GL------LGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQ 693

Query: 188 GSFG--GRPKSQPPL-------PQETAAPAPQPGPTAPPARVREPGRA--EGASREPRLR 236
           G+ G  G P  Q P+       PQ     A  PG   PP    + G++  +GA   P  +
Sbjct: 694 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 753

Query: 237 SRAARPPPA-----------------------PG----------------------PGAL 251
                P P                        PG                       G  
Sbjct: 754 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPE 813

Query: 252 SRASRSRAAGRPGPGFHGGEKA--AAPRAPGGGGGRNP-GALGRAAPPSRARQDAWGLSG 308
               R+   G PGP    GEK     P  PG  G + P G+ G    P      A G  G
Sbjct: 814 GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG-----ANGEKG 868

Query: 309 CATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRR 368
              V  + G   + G + P          R  R  R   G    +GT    GP  PPG R
Sbjct: 869 ARGVAGKPGPRGQRGPTGP----------RGSRGARGPTGKPGPKGTSGGDGPPGPPGER 918

Query: 369 HDE----EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPR 424
             +     VG    +   G   + GL   P              G+  ++ +   T  P 
Sbjct: 919 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHP--------------GQRGETGFQGKTGPPG 964

Query: 425 RSGASGPKMVADQTSGI 441
             G  GP+    +T  I
Sbjct: 965 PGGVVGPQGPTGETGPI 981



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 67/258 (25%), Positives = 83/258 (32%), Gaps = 65/258 (25%)

Query: 165 GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPG 224
           G+ A+ + P + +   P P    G  G      PP  Q    P   PG   PP R   PG
Sbjct: 429 GEPAVVE-PGMLVEGPPGPAGPAGIMG------PPGLQGPTGPPGDPGDRGPPGRPGLPG 481

Query: 225 RAEGASREP--------RLRSRAARPPPAPGPGALSRASRSRA-------------AGRP 263
            A+G    P        R     ++ P      A ++A   +A              GRP
Sbjct: 482 -ADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP 540

Query: 264 GP-------GFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRR 316
           GP       G  G      P+ P G  G  PG  G+  P  R R  A G  G       +
Sbjct: 541 GPVGGPGSSGAKGESGDPGPQGPRGVQG-PPGPTGK--PGKRGRPGADGGRGMPGEPGAK 597

Query: 317 GDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG----RRHDEE 372
           GD    G    P   G+                    G     GP  PPG    R  D E
Sbjct: 598 GDRGFDGLPGLPGDKGH-------------------RGERGPQGPPGPPGDDGMRGEDGE 638

Query: 373 VGAAVLRAGSGEGSRRGL 390
           +G    R   GE   RGL
Sbjct: 639 IGP---RGLPGEAGPRGL 653



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 53/223 (23%), Positives = 65/223 (29%), Gaps = 28/223 (12%)

Query: 94   KGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLEL 153
            KG     G+  PP P      P     RGP       G++ +  +     KG        
Sbjct: 1335 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-----KGEAGA---- 1385

Query: 154  PPRPPPNLQEGGQRAIFQRP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
               PP      G +    +P P  L   P P  ++G  G   +  PP P     P   PG
Sbjct: 1386 -EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM---GPPGLPG 1441

Query: 213  PTAPPARVREPGR----------AEGASREPRLRSRAARPPPAPG----PGALSRASRSR 258
                P    E G            E   +  R        P A G    PG         
Sbjct: 1442 LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPG 1501

Query: 259  AAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
              G PGP    G K +   A   G    PG  G   PP    Q
Sbjct: 1502 PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1544


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 100/371 (26%), Positives = 122/371 (32%), Gaps = 83/371 (22%)

Query: 70   PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRH-RKNRGPSAGTS 128
            P   G  G+    G L  P FP A G   + G +    P  G+  P   R  RGP   T 
Sbjct: 712  PGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPR-GERGPTGPRGQRGPRGATG 770

Query: 129  QLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIF--QRPPVYLGNKPTP--- 183
            + G K         T G         P  PP     G+R +   Q P  + G K  P   
Sbjct: 771  KSGAKG--------TSGGDG------PHGPP-----GERGLPGPQGPNGFPGPKGPPGPP 811

Query: 184  --------PRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREP 223
                    P Q G  G + K+ PP P     P               PGP  PP     P
Sbjct: 812  GKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 871

Query: 224  GRA--EGASREPRLRSRAARPPPAP---GPGALS--RASRSRAAGRPGPGFHGGEKAAAP 276
            G A  EG   +P        PP AP   GP  L      R       GPG  G E  + P
Sbjct: 872  GTAGKEGTKGDP-------GPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGP 924

Query: 277  RAPGGGGGRN-----------PGALGRAAPPSRARQDA----WGLSGCATVGLRRGDCDR 321
              P G  G             PG  G   PP  A +       G  G       +G    
Sbjct: 925  PGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL 984

Query: 322  AGSSQPPATSG-NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 380
             G + PP  +G +G++       ++   G +GE     HGP  PPG      VG      
Sbjct: 985  PGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGE-----HGPPGPPG--PIGPVGQPGAAG 1037

Query: 381  GSGEGSRRGLQ 391
              GE   RG Q
Sbjct: 1038 ADGEPGARGPQ 1048



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 67/260 (25%), Positives = 88/260 (33%), Gaps = 45/260 (17%)

Query: 154  PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPR------QEGSFGGRPKSQPPLPQETAAP 207
            PP P     + G +      PV     P PP       Q+G+ G R +   P   +  +P
Sbjct: 1164 PPGPKGPTGDDGPKG--NPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP--GQPGSP 1219

Query: 208  APQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP--GPGALSRASRSRAAGRPGP 265
             P  G   PP  + + G A     E R   + A+  P     PG       +  AG+PGP
Sbjct: 1220 GPT-GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1278

Query: 266  -GFHGGEKAAAPRAPGGGGGRN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRA 322
             G  G         PG  G +  PGA G+A PP         GL G A     +G     
Sbjct: 1279 DGLRG--------LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLI 1330

Query: 323  GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGS 382
            G   PP   G                    +G     GP   PG++   E+G        
Sbjct: 1331 GLIGPPGEQGE-------------------KGDRGLPGPQGSPGQK--GEMGIPGASGPI 1369

Query: 383  GEGSRRGLQLTPPPRRVHGA 402
            G G   GL     P+   GA
Sbjct: 1370 GPGGPPGLPGPAGPKGAKGA 1389



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 46/252 (18%)

Query: 174  PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVRE---PGR 225
            P+ L   P P  ++G  G     G P   PP P+  A P    GP  PP  V     PG 
Sbjct: 1068 PIGLQGLPGPSGEKGETGDVGPMGPPG--PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1125

Query: 226  --AEGASREPRLRSRAARPPPAPGP-GALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGG 282
                G S  P ++      P   GP G       S   G PGP          P+ P G 
Sbjct: 1126 KGEPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPGP--------PGPKGPTGD 1173

Query: 283  GG--RNPGALGRAAPPS-------RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN 333
             G   NPG +G    P        R +  A G  G      + G     G + PP   G 
Sbjct: 1174 DGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGK 1233

Query: 334  GERCRFCRRRRRRGG-GGEGE-------GTHATHGPASPPGRRHDEEVGAAVLRAGSGEG 385
                       R+GG G +G+       G     GPA P G+   +  G   L    G+ 
Sbjct: 1234 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPD--GLRGLPGSVGQQ 1291

Query: 386  SRRGL--QLTPP 395
             R G   Q  PP
Sbjct: 1292 GRPGATGQAGPP 1303



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 93/361 (25%), Positives = 113/361 (31%), Gaps = 90/361 (24%)

Query: 110 PGDHHPRHRKNRGPSAGTSQLGK-KTQCRSLFLRTKGLCALLLE---LPP-----RPPPN 160
           P +  P HR  R P    S+L + + Q       T G    +LE   LPP       P  
Sbjct: 236 PQNQQP-HRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRG 294

Query: 161 LQ-EGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR 219
           L+ E G+ A+ + P + +   P P    G  G      PP  Q    P   PG   PP R
Sbjct: 295 LKGEKGEPAVLE-PGMLVEGPPGPEGPAGLIG------PPGIQGNPGPVGDPGERGPPGR 347

Query: 220 VREPGRAEGASREP--------RLRSRAARPPPAPG--------------------PGAL 251
              PG ++GA   P        R  S      P                       PG +
Sbjct: 348 AGLPG-SDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPM 406

Query: 252 SRASRSRAAGRPG-PGFHGGEKAAAPRAPGGGGGRN--PGALGRAA-------------P 295
               R    G+PG PG  G      P+ P G  G    PG  GR               P
Sbjct: 407 GYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDP 466

Query: 296 PSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE---- 351
             +  +   GL G       RGD    G   PP   G             RG  GE    
Sbjct: 467 GVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDG------------ERGDDGEIGPR 514

Query: 352 ---GE-GTHATHGPASPPG-------RRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVH 400
              GE G     GP  PPG       R  D   G        GE    G Q TP  + + 
Sbjct: 515 GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLP 574

Query: 401 G 401
           G
Sbjct: 575 G 575



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 50/191 (26%), Positives = 62/191 (32%), Gaps = 40/191 (20%)

Query: 174  PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASR 231
            PV L     PP   G  G + +   P  + T     + GP  PP  +   G+  A GA  
Sbjct: 981  PVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADG 1040

Query: 232  EPRLR-------------SRAARPPPA-------PGP-GALSRASRSRAAGRPGPGFHGG 270
            EP  R             +R    PP        PGP G           G PGP     
Sbjct: 1041 EPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGP----- 1095

Query: 271  EKAAAPRAPGGGGGRN-----PGALGRAAPPSR----ARQDAWGLSGCATVGLRRGDCDR 321
                 PR P G  G +     PG +G   PP          + G+ G   V   RG+   
Sbjct: 1096 ---PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGE 1152

Query: 322  AGSSQPPATSG 332
             G S  P   G
Sbjct: 1153 KGESGQPGEPG 1163



 Score = 38.5 bits (88), Expect = 0.014
 Identities = 93/357 (26%), Positives = 116/357 (32%), Gaps = 69/357 (19%)

Query: 70  PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLP----HPGDHHPRHRKNRGPSA 125
           P ++G  G+  A G    P  P  KG    +G   P LP    H GD   +     GP  
Sbjct: 445 PGKAGRRGRAGADGARGMPGDPGVKGDRGFDG--LPGLPGEKGHRGDTGAQGLP--GPPG 500

Query: 126 GTSQLGKKTQCRSLFLR----TKGLCALLLELPPRPPPNLQ-EGGQRAIF--QRPPVYLG 178
              + G   +     L      +GL      L P+ PP +    G R +   Q P   LG
Sbjct: 501 EDGERGDDGEIGPRGLPGESGPRGL------LGPKGPPGIPGPPGVRGMDGPQGPKGSLG 554

Query: 179 --NKPTPPRQEGSFG--GRPKSQPPL-PQETAAPAPQPGPTAPPARVREPGRAEGASREP 233
              +P PP Q+G+ G  G P  Q  + P     P  +PG    P     PG   G    P
Sbjct: 555 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHP-GKEGPP 613

Query: 234 RLRSRAARPPPA-----PGPGALSRASRSRAA-------GRPG-PGFHGGEKAAAPRA-- 278
             +       P      PGP  +      R         G  G PGF G       R   
Sbjct: 614 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEV 673

Query: 279 --PGGGGGRNP-------GALGRAAPPS-RARQDAWGLSGCATVGLRRGDCDRAGSSQPP 328
             PG  G   P       G  G   PP     +   G+ G      R+G     G    P
Sbjct: 674 GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFP 733

Query: 329 ATSGN-------------GERCRFCRRRRRRGGGGEGE----GTHATHGPASPPGRR 368
             SG              GER     R +R   G  G+    GT    GP  PPG R
Sbjct: 734 GASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER 790



 Score = 36.2 bits (82), Expect = 0.068
 Identities = 78/303 (25%), Positives = 97/303 (32%), Gaps = 67/303 (22%)

Query: 181 PTPPRQEGSFGGRPKSQP-PLPQETAAPAPQPGPTAPPARVREPG-RAEGASREPR--LR 236
           P PP ++G  G   +  P  LP E + P    GP  PP     PG R     + P+  L 
Sbjct: 496 PGPPGEDGERGDDGEIGPRGLPGE-SGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLG 554

Query: 237 SRAARPPPA----------PGP-GALSRASRSRAAGRPG-PGFHGGE-------KAAAPR 277
            +    PP           PGP GA+         G+PG PG  G +       K   P 
Sbjct: 555 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPG 614

Query: 278 APGGGGGRNP-GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN--- 333
             G  G   P G LG   P         G+ G   +   +G     G    P   G+   
Sbjct: 615 TKGNQGPSGPQGPLGYPGPR--------GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGV 666

Query: 334 -GERCRFCRRRRRRGGGGEG-EGTHATHGPASPPGRRHDE-------------------E 372
            G+R        R   G EG +G     G   PPG   ++                    
Sbjct: 667 KGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 726

Query: 373 VGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL----QRFGGGRNLKSNWMSTTRTPRRSGA 428
           +G       SGE   RGL     PR   G      QR   G   KS    T      SG 
Sbjct: 727 LGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGT------SGG 780

Query: 429 SGP 431
            GP
Sbjct: 781 DGP 783



 Score = 30.0 bits (66), Expect = 4.9
 Identities = 42/153 (27%), Positives = 47/153 (30%), Gaps = 30/153 (19%)

Query: 174  PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR--VREPGRAEGASR 231
            P     KP P    G  G   +   P     A P   PGP  PP    +R    A+G   
Sbjct: 1269 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRGDAGAKGEKG 1325

Query: 232  EPRL------------RSRAARPPP--APG-------PGALSRASRSRAAGRPGPGFHGG 270
             P L            +     P P  +PG       PGA          G PGP    G
Sbjct: 1326 HPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1385

Query: 271  EKAAAPRAPGGGGGRN--PGALGRAAPPSRARQ 301
             K A    PGG  G     G  G   PP    Q
Sbjct: 1386 AKGAT--GPGGPKGEKGVQGPPGHPGPPGEVIQ 1416


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 100/371 (26%), Positives = 122/371 (32%), Gaps = 83/371 (22%)

Query: 70   PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRH-RKNRGPSAGTS 128
            P   G  G+    G L  P FP A G   + G +    P  G+  P   R  RGP   T 
Sbjct: 691  PGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPR-GERGPTGPRGQRGPRGATG 749

Query: 129  QLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIF--QRPPVYLGNKPTP--- 183
            + G K         T G         P  PP     G+R +   Q P  + G K  P   
Sbjct: 750  KSGAKG--------TSGGDG------PHGPP-----GERGLPGPQGPNGFPGPKGPPGPP 790

Query: 184  --------PRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREP 223
                    P Q G  G + K+ PP P     P               PGP  PP     P
Sbjct: 791  GKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 850

Query: 224  GRA--EGASREPRLRSRAARPPPAP---GPGALS--RASRSRAAGRPGPGFHGGEKAAAP 276
            G A  EG   +P        PP AP   GP  L      R       GPG  G E  + P
Sbjct: 851  GTAGKEGTKGDP-------GPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGP 903

Query: 277  RAPGGGGGRN-----------PGALGRAAPPSRARQDA----WGLSGCATVGLRRGDCDR 321
              P G  G             PG  G   PP  A +       G  G       +G    
Sbjct: 904  PGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL 963

Query: 322  AGSSQPPATSG-NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 380
             G + PP  +G +G++       ++   G +GE     HGP  PPG      VG      
Sbjct: 964  PGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGE-----HGPPGPPG--PIGPVGQPGAAG 1016

Query: 381  GSGEGSRRGLQ 391
              GE   RG Q
Sbjct: 1017 ADGEPGARGPQ 1027



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 67/260 (25%), Positives = 88/260 (33%), Gaps = 45/260 (17%)

Query: 154  PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPR------QEGSFGGRPKSQPPLPQETAAP 207
            PP P     + G +      PV     P PP       Q+G+ G R +   P   +  +P
Sbjct: 1143 PPGPKGPTGDDGPKG--NPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP--GQPGSP 1198

Query: 208  APQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP--GPGALSRASRSRAAGRPGP 265
             P  G   PP  + + G A     E R   + A+  P     PG       +  AG+PGP
Sbjct: 1199 GPT-GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1257

Query: 266  -GFHGGEKAAAPRAPGGGGGRN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRA 322
             G  G         PG  G +  PGA G+A PP         GL G A     +G     
Sbjct: 1258 DGLRG--------LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLI 1309

Query: 323  GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGS 382
            G   PP   G                    +G     GP   PG++   E+G        
Sbjct: 1310 GLIGPPGEQGE-------------------KGDRGLPGPQGSPGQK--GEMGIPGASGPI 1348

Query: 383  GEGSRRGLQLTPPPRRVHGA 402
            G G   GL     P+   GA
Sbjct: 1349 GPGGPPGLPGPAGPKGAKGA 1368



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 76/282 (26%), Positives = 94/282 (33%), Gaps = 56/282 (19%)

Query: 163 EGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVRE 222
           EGGQR   Q    +   +   P+Q+ S   RP++Q P  Q    P    G    PA V E
Sbjct: 229 EGGQRERPQNQQPHRAQRS--PQQQPSRLHRPQNQEPQSQAAHGPRGLKGEKGEPA-VLE 285

Query: 223 PGRAEGASREPRLRSRAARPPPA---PGP-------GALSRASRSRAAGRPGP------- 265
           PG        P   +    PP     PGP       G   RA    + G PGP       
Sbjct: 286 PGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLML 345

Query: 266 ----GFHGGEKA---------------------AAPRAPGGGGGRNPGALGRAAPPSRAR 300
               G  GG+K                        P  P G  GR PG LG+   P    
Sbjct: 346 PFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGR-PGPLGQPGSP---- 400

Query: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
               GL G +     +G     G + PP  +G   R      R   G  G  +G     G
Sbjct: 401 ----GLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGV-KGDRGFDG 455

Query: 361 -PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG 401
            P  P  + H  + GA  L    GE   RG      PR + G
Sbjct: 456 LPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPG 497



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 46/252 (18%)

Query: 174  PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVRE---PGR 225
            P+ L   P P  ++G  G     G P   PP P+  A P    GP  PP  V     PG 
Sbjct: 1047 PIGLQGLPGPSGEKGETGDVGPMGPPG--PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1104

Query: 226  --AEGASREPRLRSRAARPPPAPGP-GALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGG 282
                G S  P ++      P   GP G       S   G PGP          P+ P G 
Sbjct: 1105 KGEPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPGP--------PGPKGPTGD 1152

Query: 283  GG--RNPGALGRAAPPS-------RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN 333
             G   NPG +G    P        R +  A G  G      + G     G + PP   G 
Sbjct: 1153 DGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGK 1212

Query: 334  GERCRFCRRRRRRGG-GGEGE-------GTHATHGPASPPGRRHDEEVGAAVLRAGSGEG 385
                       R+GG G +G+       G     GPA P G+   +  G   L    G+ 
Sbjct: 1213 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPD--GLRGLPGSVGQQ 1270

Query: 386  SRRGL--QLTPP 395
             R G   Q  PP
Sbjct: 1271 GRPGATGQAGPP 1282



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 50/191 (26%), Positives = 62/191 (32%), Gaps = 40/191 (20%)

Query: 174  PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASR 231
            PV L     PP   G  G + +   P  + T     + GP  PP  +   G+  A GA  
Sbjct: 960  PVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADG 1019

Query: 232  EPRLR-------------SRAARPPPA-------PGP-GALSRASRSRAAGRPGPGFHGG 270
            EP  R             +R    PP        PGP G           G PGP     
Sbjct: 1020 EPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGP----- 1074

Query: 271  EKAAAPRAPGGGGGRN-----PGALGRAAPPSR----ARQDAWGLSGCATVGLRRGDCDR 321
                 PR P G  G +     PG +G   PP          + G+ G   V   RG+   
Sbjct: 1075 ---PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGE 1131

Query: 322  AGSSQPPATSG 332
             G S  P   G
Sbjct: 1132 KGESGQPGEPG 1142



 Score = 38.5 bits (88), Expect = 0.014
 Identities = 93/357 (26%), Positives = 116/357 (32%), Gaps = 69/357 (19%)

Query: 70  PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLP----HPGDHHPRHRKNRGPSA 125
           P ++G  G+  A G    P  P  KG    +G   P LP    H GD   +     GP  
Sbjct: 424 PGKAGRRGRAGADGARGMPGDPGVKGDRGFDG--LPGLPGEKGHRGDTGAQGLP--GPPG 479

Query: 126 GTSQLGKKTQCRSLFLR----TKGLCALLLELPPRPPPNLQ-EGGQRAIF--QRPPVYLG 178
              + G   +     L      +GL      L P+ PP +    G R +   Q P   LG
Sbjct: 480 EDGERGDDGEIGPRGLPGESGPRGL------LGPKGPPGIPGPPGVRGMDGPQGPKGSLG 533

Query: 179 --NKPTPPRQEGSFG--GRPKSQPPL-PQETAAPAPQPGPTAPPARVREPGRAEGASREP 233
              +P PP Q+G+ G  G P  Q  + P     P  +PG    P     PG   G    P
Sbjct: 534 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHP-GKEGPP 592

Query: 234 RLRSRAARPPPA-----PGPGALSRASRSRAA-------GRPG-PGFHGGEKAAAPRA-- 278
             +       P      PGP  +      R         G  G PGF G       R   
Sbjct: 593 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEV 652

Query: 279 --PGGGGGRNP-------GALGRAAPPS-RARQDAWGLSGCATVGLRRGDCDRAGSSQPP 328
             PG  G   P       G  G   PP     +   G+ G      R+G     G    P
Sbjct: 653 GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFP 712

Query: 329 ATSGN-------------GERCRFCRRRRRRGGGGEGE----GTHATHGPASPPGRR 368
             SG              GER     R +R   G  G+    GT    GP  PPG R
Sbjct: 713 GASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER 769



 Score = 36.2 bits (82), Expect = 0.068
 Identities = 78/303 (25%), Positives = 97/303 (32%), Gaps = 67/303 (22%)

Query: 181 PTPPRQEGSFGGRPKSQP-PLPQETAAPAPQPGPTAPPARVREPG-RAEGASREPR--LR 236
           P PP ++G  G   +  P  LP E + P    GP  PP     PG R     + P+  L 
Sbjct: 475 PGPPGEDGERGDDGEIGPRGLPGE-SGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLG 533

Query: 237 SRAARPPPA----------PGP-GALSRASRSRAAGRPG-PGFHGGE-------KAAAPR 277
            +    PP           PGP GA+         G+PG PG  G +       K   P 
Sbjct: 534 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPG 593

Query: 278 APGGGGGRNP-GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN--- 333
             G  G   P G LG   P         G+ G   +   +G     G    P   G+   
Sbjct: 594 TKGNQGPSGPQGPLGYPGPR--------GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGV 645

Query: 334 -GERCRFCRRRRRRGGGGEG-EGTHATHGPASPPGRRHDE-------------------E 372
            G+R        R   G EG +G     G   PPG   ++                    
Sbjct: 646 KGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 705

Query: 373 VGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL----QRFGGGRNLKSNWMSTTRTPRRSGA 428
           +G       SGE   RGL     PR   G      QR   G   KS    T      SG 
Sbjct: 706 LGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGT------SGG 759

Query: 429 SGP 431
            GP
Sbjct: 760 DGP 762



 Score = 30.0 bits (66), Expect = 4.9
 Identities = 42/153 (27%), Positives = 47/153 (30%), Gaps = 30/153 (19%)

Query: 174  PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR--VREPGRAEGASR 231
            P     KP P    G  G   +   P     A P   PGP  PP    +R    A+G   
Sbjct: 1248 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRGDAGAKGEKG 1304

Query: 232  EPRL------------RSRAARPPP--APG-------PGALSRASRSRAAGRPGPGFHGG 270
             P L            +     P P  +PG       PGA          G PGP    G
Sbjct: 1305 HPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1364

Query: 271  EKAAAPRAPGGGGGRN--PGALGRAAPPSRARQ 301
             K A    PGG  G     G  G   PP    Q
Sbjct: 1365 AKGAT--GPGGPKGEKGVQGPPGHPGPPGEVIQ 1395


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 100/371 (26%), Positives = 122/371 (32%), Gaps = 83/371 (22%)

Query: 70   PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRH-RKNRGPSAGTS 128
            P   G  G+    G L  P FP A G   + G +    P  G+  P   R  RGP   T 
Sbjct: 798  PGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPR-GERGPTGPRGQRGPRGATG 856

Query: 129  QLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIF--QRPPVYLGNKPTP--- 183
            + G K         T G         P  PP     G+R +   Q P  + G K  P   
Sbjct: 857  KSGAKG--------TSGGDG------PHGPP-----GERGLPGPQGPNGFPGPKGPPGPP 897

Query: 184  --------PRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREP 223
                    P Q G  G + K+ PP P     P               PGP  PP     P
Sbjct: 898  GKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 957

Query: 224  GRA--EGASREPRLRSRAARPPPAP---GPGALS--RASRSRAAGRPGPGFHGGEKAAAP 276
            G A  EG   +P        PP AP   GP  L      R       GPG  G E  + P
Sbjct: 958  GTAGKEGTKGDP-------GPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGP 1010

Query: 277  RAPGGGGGRN-----------PGALGRAAPPSRARQDA----WGLSGCATVGLRRGDCDR 321
              P G  G             PG  G   PP  A +       G  G       +G    
Sbjct: 1011 PGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL 1070

Query: 322  AGSSQPPATSG-NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 380
             G + PP  +G +G++       ++   G +GE     HGP  PPG      VG      
Sbjct: 1071 PGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGE-----HGPPGPPG--PIGPVGQPGAAG 1123

Query: 381  GSGEGSRRGLQ 391
              GE   RG Q
Sbjct: 1124 ADGEPGARGPQ 1134



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 67/260 (25%), Positives = 88/260 (33%), Gaps = 45/260 (17%)

Query: 154  PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPR------QEGSFGGRPKSQPPLPQETAAP 207
            PP P     + G +      PV     P PP       Q+G+ G R +   P   +  +P
Sbjct: 1250 PPGPKGPTGDDGPKG--NPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP--GQPGSP 1305

Query: 208  APQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP--GPGALSRASRSRAAGRPGP 265
             P  G   PP  + + G A     E R   + A+  P     PG       +  AG+PGP
Sbjct: 1306 GPT-GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1364

Query: 266  -GFHGGEKAAAPRAPGGGGGRN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRA 322
             G  G         PG  G +  PGA G+A PP         GL G A     +G     
Sbjct: 1365 DGLRG--------LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLI 1416

Query: 323  GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGS 382
            G   PP   G                    +G     GP   PG++   E+G        
Sbjct: 1417 GLIGPPGEQGE-------------------KGDRGLPGPQGSPGQK--GEMGIPGASGPI 1455

Query: 383  GEGSRRGLQLTPPPRRVHGA 402
            G G   GL     P+   GA
Sbjct: 1456 GPGGPPGLPGPAGPKGAKGA 1475



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 46/252 (18%)

Query: 174  PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVRE---PGR 225
            P+ L   P P  ++G  G     G P   PP P+  A P    GP  PP  V     PG 
Sbjct: 1154 PIGLQGLPGPSGEKGETGDVGPMGPPG--PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1211

Query: 226  --AEGASREPRLRSRAARPPPAPGP-GALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGG 282
                G S  P ++      P   GP G       S   G PGP          P+ P G 
Sbjct: 1212 KGEPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPGP--------PGPKGPTGD 1259

Query: 283  GG--RNPGALGRAAPPS-------RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN 333
             G   NPG +G    P        R +  A G  G      + G     G + PP   G 
Sbjct: 1260 DGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGK 1319

Query: 334  GERCRFCRRRRRRGG-GGEGE-------GTHATHGPASPPGRRHDEEVGAAVLRAGSGEG 385
                       R+GG G +G+       G     GPA P G+   +  G   L    G+ 
Sbjct: 1320 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPD--GLRGLPGSVGQQ 1377

Query: 386  SRRGL--QLTPP 395
             R G   Q  PP
Sbjct: 1378 GRPGATGQAGPP 1389



 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 75/298 (25%), Positives = 89/298 (29%), Gaps = 79/298 (26%)

Query: 163 EGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVRE 222
           E G+ A+ + P + +   P P    G  G      PP  Q    P   PG   PP R   
Sbjct: 384 EKGEPAVLE-PGMLVEGPPGPEGPAGLIG------PPGIQGNPGPVGDPGERGPPGRAGL 436

Query: 223 PGRAEGASREP--------RLRSRAARPPPAPG--------------------PGALSRA 254
           PG ++GA   P        R  S      P                       PG +   
Sbjct: 437 PG-SDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYT 495

Query: 255 SRSRAAGRPG-PGFHGGEKAAAPRAPGGGGGRN--PGALGRAA-------------PPSR 298
            R    G+PG PG  G      P+ P G  G    PG  GR               P  +
Sbjct: 496 GRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVK 555

Query: 299 ARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE------- 351
             +   GL G       RGD    G   PP   G             RG  GE       
Sbjct: 556 GDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDG------------ERGDDGEIGPRGLP 603

Query: 352 GE-GTHATHGPASPPG-------RRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG 401
           GE G     GP  PPG       R  D   G        GE    G Q TP  + + G
Sbjct: 604 GESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPG 661



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 50/191 (26%), Positives = 62/191 (32%), Gaps = 40/191 (20%)

Query: 174  PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASR 231
            PV L     PP   G  G + +   P  + T     + GP  PP  +   G+  A GA  
Sbjct: 1067 PVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADG 1126

Query: 232  EPRLR-------------SRAARPPPA-------PGP-GALSRASRSRAAGRPGPGFHGG 270
            EP  R             +R    PP        PGP G           G PGP     
Sbjct: 1127 EPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGP----- 1181

Query: 271  EKAAAPRAPGGGGGRN-----PGALGRAAPPSR----ARQDAWGLSGCATVGLRRGDCDR 321
                 PR P G  G +     PG +G   PP          + G+ G   V   RG+   
Sbjct: 1182 ---PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGE 1238

Query: 322  AGSSQPPATSG 332
             G S  P   G
Sbjct: 1239 KGESGQPGEPG 1249



 Score = 38.5 bits (88), Expect = 0.014
 Identities = 93/357 (26%), Positives = 116/357 (32%), Gaps = 69/357 (19%)

Query: 70  PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLP----HPGDHHPRHRKNRGPSA 125
           P ++G  G+  A G    P  P  KG    +G   P LP    H GD   +     GP  
Sbjct: 531 PGKAGRRGRAGADGARGMPGDPGVKGDRGFDG--LPGLPGEKGHRGDTGAQGLP--GPPG 586

Query: 126 GTSQLGKKTQCRSLFLR----TKGLCALLLELPPRPPPNLQ-EGGQRAIF--QRPPVYLG 178
              + G   +     L      +GL      L P+ PP +    G R +   Q P   LG
Sbjct: 587 EDGERGDDGEIGPRGLPGESGPRGL------LGPKGPPGIPGPPGVRGMDGPQGPKGSLG 640

Query: 179 --NKPTPPRQEGSFG--GRPKSQPPL-PQETAAPAPQPGPTAPPARVREPGRAEGASREP 233
              +P PP Q+G+ G  G P  Q  + P     P  +PG    P     PG   G    P
Sbjct: 641 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHP-GKEGPP 699

Query: 234 RLRSRAARPPPA-----PGPGALSRASRSRAA-------GRPG-PGFHGGEKAAAPRA-- 278
             +       P      PGP  +      R         G  G PGF G       R   
Sbjct: 700 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEV 759

Query: 279 --PGGGGGRNP-------GALGRAAPPS-RARQDAWGLSGCATVGLRRGDCDRAGSSQPP 328
             PG  G   P       G  G   PP     +   G+ G      R+G     G    P
Sbjct: 760 GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFP 819

Query: 329 ATSGN-------------GERCRFCRRRRRRGGGGEGE----GTHATHGPASPPGRR 368
             SG              GER     R +R   G  G+    GT    GP  PPG R
Sbjct: 820 GASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER 876



 Score = 36.2 bits (82), Expect = 0.068
 Identities = 78/303 (25%), Positives = 97/303 (32%), Gaps = 67/303 (22%)

Query: 181 PTPPRQEGSFGGRPKSQP-PLPQETAAPAPQPGPTAPPARVREPG-RAEGASREPR--LR 236
           P PP ++G  G   +  P  LP E + P    GP  PP     PG R     + P+  L 
Sbjct: 582 PGPPGEDGERGDDGEIGPRGLPGE-SGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLG 640

Query: 237 SRAARPPPA----------PGP-GALSRASRSRAAGRPG-PGFHGGE-------KAAAPR 277
            +    PP           PGP GA+         G+PG PG  G +       K   P 
Sbjct: 641 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPG 700

Query: 278 APGGGGGRNP-GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN--- 333
             G  G   P G LG   P         G+ G   +   +G     G    P   G+   
Sbjct: 701 TKGNQGPSGPQGPLGYPGPR--------GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGV 752

Query: 334 -GERCRFCRRRRRRGGGGEG-EGTHATHGPASPPGRRHDE-------------------E 372
            G+R        R   G EG +G     G   PPG   ++                    
Sbjct: 753 KGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 812

Query: 373 VGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL----QRFGGGRNLKSNWMSTTRTPRRSGA 428
           +G       SGE   RGL     PR   G      QR   G   KS    T      SG 
Sbjct: 813 LGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGT------SGG 866

Query: 429 SGP 431
            GP
Sbjct: 867 DGP 869



 Score = 30.0 bits (66), Expect = 4.9
 Identities = 42/153 (27%), Positives = 47/153 (30%), Gaps = 30/153 (19%)

Query: 174  PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR--VREPGRAEGASR 231
            P     KP P    G  G   +   P     A P   PGP  PP    +R    A+G   
Sbjct: 1355 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRGDAGAKGEKG 1411

Query: 232  EPRL------------RSRAARPPP--APG-------PGALSRASRSRAAGRPGPGFHGG 270
             P L            +     P P  +PG       PGA          G PGP    G
Sbjct: 1412 HPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1471

Query: 271  EKAAAPRAPGGGGGRN--PGALGRAAPPSRARQ 301
             K A    PGG  G     G  G   PP    Q
Sbjct: 1472 AKGAT--GPGGPKGEKGVQGPPGHPGPPGEVIQ 1502


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 93/357 (26%), Positives = 120/357 (33%), Gaps = 67/357 (18%)

Query: 69  NPKRSGDMGKYHAHGH---LRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSA 125
           NP   G  G   A+G      AP FP A+G    +G   PP P      P    ++G + 
Sbjct: 387 NPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTG 446

Query: 126 GTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPR 185
              + G                   + +   P P  +EG + A  +  P  L   P PP 
Sbjct: 447 AKGEPGP------------------VGVQGPPGPAGEEGKRGARGEPGPTGL---PGPPG 485

Query: 186 QEGSFGGR--PKSQPPL-PQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARP 242
           + G  G R  P +     P+  A     PGP  P     E GR  G +  P  +      
Sbjct: 486 ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR-PGEAGLPGAKGLTG-S 543

Query: 243 PPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN-------PGALGRAAP 295
           P +PGP            G PGP    G     P  PG  G R        PG  G A  
Sbjct: 544 PGSPGPDG--------KTGPPGPAGQDGR----PGPPGPPGARGQAGVMGFPGPKGAAGE 591

Query: 296 PSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGT 355
           P +A +   G+ G        G    AG+  PP  +G           R   G     G 
Sbjct: 592 PGKAGER--GVPGPPGAVGPAGKDGEAGAQGPPGPAGPA-------GERGEQGPAGSPGF 642

Query: 356 HATHGPASPPGR--RHDEEVGAAVLRAGSGEGSR--------RGLQLTPPPRRVHGA 402
               GPA PPG   +  E+     L A    G+R        RG+Q  P P    GA
Sbjct: 643 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGA 699



 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 68/241 (28%), Positives = 86/241 (35%), Gaps = 32/241 (13%)

Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPT-----APPARVREPGRAEGASREPRL 235
           P P    G+ G    + PP P   A P   PG       A P   R     +G   EP  
Sbjct: 316 PGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGP 375

Query: 236 RSRAARPPPAPGPGALSRASRSRAAGRPG----PGFHGGEKAAAPRAPGGGGGRNPGALG 291
              A    PA  PGA  +     A G PG    PGF G    + P+ PGG  G    +  
Sbjct: 376 PGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE 435

Query: 292 RAAPPSRARQDAWGLSGCATVGLR-----RGDCDRAGSSQPPATSG----NGERCRFCRR 342
             AP S+    A G  G   VG++      G+  + G+   P  +G     GE       
Sbjct: 436 PGAPGSKGDTGAKGEPG--PVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGE------- 486

Query: 343 RRRRGGGGEG-EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG 401
             R G G  G  G     GP  P G R     G A  +   GE  R G    P  + + G
Sbjct: 487 --RGGPGSRGFPGADGVAGPKGPAGERGSP--GPAGPKGSPGEAGRPGEAGLPGAKGLTG 542

Query: 402 A 402
           +
Sbjct: 543 S 543



 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 67/250 (26%), Positives = 81/250 (32%), Gaps = 40/250 (16%)

Query: 194 PKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP-GP---- 248
           PK +P  P E  AP  Q GP   P     PG    A       +  A  PP P GP    
Sbjct: 285 PKGEPGSPGENGAPG-QMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343

Query: 249 ------GALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQD 302
                 GA   A      G  GP    GE      A   G   NPGA G+  P ++    
Sbjct: 344 GFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQ--PGAKGANG 401

Query: 303 AWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPA 362
           A G++G       RG     G   PP   GN         +   G  GE  G     GP 
Sbjct: 402 APGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGE-PGPVGVQGPP 460

Query: 363 SPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRT 422
            P                 +GE  +RG +  P P  + G     GG          +   
Sbjct: 461 GP-----------------AGEEGKRGARGEPGPTGLPGPPGERGG--------PGSRGF 495

Query: 423 PRRSGASGPK 432
           P   G +GPK
Sbjct: 496 PGADGVAGPK 505



 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 66/271 (24%), Positives = 83/271 (30%), Gaps = 79/271 (29%)

Query: 181 PTPPR-QEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR-----------------VRE 222
           P  PR  EG  G R +  PP P   A PA  PG    P                    R 
Sbjct: 357 PQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARG 416

Query: 223 PGRAEGASREPRLRSRAARPPPAPG-------------------PGALSRASRSRAAGRP 263
           P   +G    P  +  +  P  APG                   PG      +  A G P
Sbjct: 417 PSGPQGPGGPPGPKGNSGEPG-APGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP 475

Query: 264 GP----------------GFHGGEKAAAPRAPGGGGGRNPGALG-RAAPPSRARQDAWGL 306
           GP                GF G +  A P+ P G  G +PG  G + +P    R    GL
Sbjct: 476 GPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERG-SPGPAGPKGSPGEAGRPGEAGL 534

Query: 307 SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG 366
            G   +    G     G + PP  +G   R                       GP  PPG
Sbjct: 535 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGR----------------------PGPPGPPG 572

Query: 367 RRHDEEV-GAAVLRAGSGEGSRRGLQLTPPP 396
            R    V G    +  +GE  + G +  P P
Sbjct: 573 ARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 603



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 57/205 (27%), Positives = 73/205 (35%), Gaps = 36/205 (17%)

Query: 181 PTPPRQEGSFGGR-PKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRA 239
           P PP   G  G + P  +P  P  +    P+ GP  PP +  + G A           + 
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPR-GPPGPPGKNGDDGEA----------GKP 238

Query: 240 ARPPPAPGPGALSRASRSRAAGRPG----PGFHGGEKA------AAPRAPGGGGGRN--P 287
            RP     PG          AG PG     GF G + A      A P+   G  G N  P
Sbjct: 239 GRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP 298

Query: 288 GALG-RAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRR 346
           G +G R  P  R R  A G +G       RG+    G++ PP  +G      F      +
Sbjct: 299 GQMGPRGLPGERGRPGAPGPAGA------RGNDGATGAAGPPGPTGPAGPPGFPGAVGAK 352

Query: 347 GGGGE-----GEGTHATHGPASPPG 366
           G  G       EG     G   PPG
Sbjct: 353 GEAGPQGPRGSEGPQGVRGEPGPPG 377



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 84/337 (24%), Positives = 103/337 (30%), Gaps = 56/337 (16%)

Query: 70   PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPH-----PGDHHPRHRKN-RGP 123
            P   G++G   A G   +   P A G   + GR  PP P      PG   P  ++  +GP
Sbjct: 850  PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGP 909

Query: 124  SAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTP 183
               T   G+  +                  PP PP    E G        P      P P
Sbjct: 910  RGETGPAGRPGEVG----------------PPGPPGPAGEKGSPGA--DGPAGAPGTPGP 951

Query: 184  PRQEGSFG--GRPKSQ-----PPLPQETAAPAPQ-----PGPTAPPARVREPGRAEGASR 231
                G  G  G P  +     P LP  +  P  Q      G   PP  +  PG A     
Sbjct: 952  QGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1011

Query: 232  EPRLRSRAARPPPA--PGPGALSRASRSRAAGRPG-PGFHGGEKAAAPRAPGGGGGRN-- 286
              R  +  A   P     PGA      +  AG PG PG  G      P    G  G    
Sbjct: 1012 SGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGP 1071

Query: 287  ---------PGALGRAAPPS-RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGER 336
                      GA G A P   R  +   G  G   +   RG     G   PP + G    
Sbjct: 1072 AGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP 1131

Query: 337  CRFCRRRRRRGGGGEG-----EGTHATHGPASPPGRR 368
                     RG  G       +G +   GP  PPG R
Sbjct: 1132 SGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPR 1168



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 103/389 (26%), Positives = 130/389 (33%), Gaps = 55/389 (14%)

Query: 73   SGDMGKYHAHGHLRAPVFPVAKGSVPSEG----RATPPLPHP-GDHHPRHRKNRGPSAGT 127
            +G  G   A G   AP  P ++G+   +G    R    LP P GD     R + GP    
Sbjct: 700  NGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGD-----RGDAGPKGAD 754

Query: 128  SQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQE 187
               GK           +GL   +   PP P     + G+      P    G    P    
Sbjct: 755  GSPGKDG--------VRGLTGPIG--PPGPAGAPGDKGESG----PSGPAG----PTGAR 796

Query: 188  GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRA--EGASREPRLRSRAARPPPA 245
            G+ G R +  PP P   A P   PG    P    EPG A  +G +  P     A  P P 
Sbjct: 797  GAPGDRGEPGPPGPAGFAGP---PGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853

Query: 246  PGPGALSRASRSRAAGRPGP-GFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAW 304
               GA        +AG PG  GF G      P          PG  G A PP        
Sbjct: 854  GNVGAPGAKGARGSAGPPGATGFPGAAGRVGP----------PGPSGNAGPP--GPPGPA 901

Query: 305  GLSGCATVGLRRGDCDRAGSSQPPATSG-NGERCRFCRRRRRRGGGGEG-EGTHATHGPA 362
            G  G        G   R G   PP   G  GE+            G  G +G     G  
Sbjct: 902  GKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVV 961

Query: 363  SPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFG----GGRNLKSNWMS 418
              PG+R   E G   L   SGE  ++G       R   G +   G     G + +     
Sbjct: 962  GLPGQR--GERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPG 1019

Query: 419  TTRTPRRSGASGPKMVADQTSGISRPPTA 447
               +P R G+ G K    +T G + PP A
Sbjct: 1020 AEGSPGRDGSPGAKGDRGET-GPAGPPGA 1047



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 63/225 (28%), Positives = 77/225 (34%), Gaps = 61/225 (27%)

Query: 201 PQETAAPAPQPGPTAPPARVREPGR----------------AEGASREPRLR----SRAA 240
           P+    P    GP  PP R   PG+                  G +  P+L      ++ 
Sbjct: 113 PKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKST 172

Query: 241 RPPPAPGP-GALSRASRSRAAGRPGP-GFHG-----GEKAAA----PRAPGGGGGRN--- 286
                PGP G           G PGP GF G     GE  A+    PR P G  G+N   
Sbjct: 173 GGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDD 232

Query: 287 -----PGALGRAAPPSRARQDAWGLSGCATV-GLR-----------RGDCDRAGSSQPPA 329
                PG  G   PP    Q A GL G A + G++           +GD   AG    P 
Sbjct: 233 GEAGKPGRPGERGPP--GPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPG 290

Query: 330 TSG-NGERCRFCRR-----RRRRGGGGE--GEGTHATHGPASPPG 366
           + G NG   +   R     R R G  G     G     G A PPG
Sbjct: 291 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG 335



 Score = 33.1 bits (74), Expect = 0.57
 Identities = 38/140 (27%), Positives = 45/140 (32%), Gaps = 23/140 (16%)

Query: 181  PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPG----RAEGASREPRLR 236
            P P    G  G R ++ P  P     P    GP  P     + G    + +   +  R  
Sbjct: 1054 PGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGF 1113

Query: 237  SRAARPPPAPG-PGALSRASRSRAAGRPGP-------GFHGGEKAAAPRAPGGGGGRN-- 286
            S    PP  PG PG    +  S  AG  GP       G  G      P  P G  GR   
Sbjct: 1114 SGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGD 1173

Query: 287  ---------PGALGRAAPPS 297
                     PG  G   PPS
Sbjct: 1174 AGPVGPPGPPGPPGPPGPPS 1193


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 97/347 (27%), Positives = 113/347 (32%), Gaps = 82/347 (23%)

Query: 74  GDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRK-NRGPSAGTSQLGK 132
           G+ G     GH  AP  P A+G +  EGR  P    PG    R +K + GP      LG 
Sbjct: 657 GEQGAPGPRGHQGAPGPPGARGPIGPEGRDGP----PGLQGLRGKKGDMGPPGIPGLLG- 711

Query: 133 KTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGG 192
                             L+ PP PP      G            G  P  P + G F G
Sbjct: 712 ------------------LQGPPGPPGVPGPPGP-----------GGSPGLPGEIG-FPG 741

Query: 193 RPKSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGA 250
           +P   PP P          GP  PP    EPG    +G   +P LR        A  PG 
Sbjct: 742 KP--GPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGE 799

Query: 251 LSRASRSRAAGRPG----------------PGFHG--GEKA-AAPRAPGGGGG------- 284
              A    A G PG                PG  G  GEK  A P  P G  G       
Sbjct: 800 KGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTP 859

Query: 285 --RNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRR 342
             R PG  G    P   + D  GL G   +  R G+    G + PP   G          
Sbjct: 860 HPRMPGEQG----PKGEKGDP-GLPGEPGLQGRPGELGPQGPTGPPGAKGQ----EGAHG 910

Query: 343 RRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRG 389
                G     G     GP+ PPG      VGA  LR   G+   RG
Sbjct: 911 APGAAGNPGAPGHVGAPGPSGPPG-----SVGAPGLRGTPGKDGERG 952



 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 91/334 (27%), Positives = 115/334 (34%), Gaps = 48/334 (14%)

Query: 70   PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPP-------LPH-PGDHHPRHRKNR 121
            P   G  G+    G    P  P  +G +  +G A  P       LP  PG   P  R  +
Sbjct: 761  PGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPG--FPGVRGEK 818

Query: 122  GPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKP 181
            G      +LG            KG      E  P  PP L   G  ++F   P   G + 
Sbjct: 819  GDQGEKGELGLPG--------LKGDRGEKGEAGPAGPPGLP--GTTSLFTPHPRMPGEQG 868

Query: 182  TPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASREPRLRSRA 239
              P+ E    G P  +P L        PQ GPT PP    + G   A GA+  P      
Sbjct: 869  --PKGEKGDPGLP-GEPGLQGRPGELGPQ-GPTGPPGAKGQEGAHGAPGAAGNPGAPGHV 924

Query: 240  ARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPR--APGGGGGR-NPGALGRAAPP 296
              P P+  PG++         G PG     GEK AA    +PG  G R +PGA G   PP
Sbjct: 925  GAPGPSGPPGSVGAPG---LRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPP 981

Query: 297  SRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE-GEGT 355
             + +    GL                GS   P   G    C   R       GG+  +G 
Sbjct: 982  GKGKDGEPGL---------------RGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGD 1026

Query: 356  HATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRG 389
                G    PG R D  +G A     SG    +G
Sbjct: 1027 RGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKG 1060



 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 86/324 (26%), Positives = 110/324 (33%), Gaps = 78/324 (24%)

Query: 91   PVAKGSVPSEGRATPPLPHPG-----DHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKG 145
            P  KGS  S G   P  P P      D  P +   RGP  G   L        + L  K 
Sbjct: 1056 PGDKGSPGSRG--LPGFPGPQGPAGRDGAPGNPGERGPP-GKPGLSSLLSPGDINLLAKD 1112

Query: 146  LCALLLELPPRPP--PNLQEGGQRAIFQRPPVYLGNKPTP--PRQEGSFGGRPKSQPP-L 200
            +C    + PP PP  P L            P + G+K  P  P +EG+ G + ++ PP L
Sbjct: 1113 VCN---DCPPGPPGLPGL------------PGFKGDKGVPGKPGREGTEGKKGEAGPPGL 1157

Query: 201  PQETAAPAPQ-----------------------PGPTAPPARVREPGR--AEGASREPRL 235
            P       PQ                       PG   PP     PG     GA+  P +
Sbjct: 1158 PGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGI 1217

Query: 236  RSRAARP-PPAPG-----PGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNP-- 287
            +    +  PP P      PG      +    G+PGP    G KA  P  PG  G R P  
Sbjct: 1218 QGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPG-KAGEPGLPGPEGARGPPG 1276

Query: 288  --GALGRA-APPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRR 344
              G  G + AP  R    A GL G   +  + GD    G   P    G            
Sbjct: 1277 FKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRG------------ 1324

Query: 345  RRGGGGEGEGTHATHGPASPPGRR 368
               G     G+    GP+  PG++
Sbjct: 1325 -PPGKNGSPGSPGEPGPSGTPGQK 1347



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 81/297 (27%), Positives = 99/297 (33%), Gaps = 61/297 (20%)

Query: 181 PTPPRQEGSFGGRPK----SQPPLPQETAAPAPQ--PGPTAPPARVREPG----RAEGAS 230
           P PP ++GS G R +     +P LP E     PQ  PG   PP RV  PG    R E  +
Sbjct: 538 PGPPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGT 597

Query: 231 R-------------EPRLRSRAARPPPAPGPGALSRASRSRAAGRPG--------PGFHG 269
           R             +P    +  RP P+   G          AG PG         G  G
Sbjct: 598 RGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKG 657

Query: 270 GEKAAAPR----APGGGGGRNP-GALGRAAPPS----RARQDAWGLSGCATVGLRRGDCD 320
            + A  PR    APG  G R P G  GR  PP     R ++   G  G   +   +G   
Sbjct: 658 EQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPG 717

Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGE----GTHATHGPASPPGRRHDEEVGAA 376
             G   PP   G+               G  GE    G     GP  PPG+  D   G  
Sbjct: 718 PPGVPGPPGPGGS--------------PGLPGEIGFPGKPGPPGPTGPPGK--DGPNGPP 761

Query: 377 VLRAGSGEGSRRGLQLTPPPRRVHGALQRFG-GGRNLKSNWMSTTRTPRRSGASGPK 432
                 GE   RG    P    + G +   G  GR  +         P   G  G K
Sbjct: 762 GPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEK 818



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 89/360 (24%), Positives = 115/360 (31%), Gaps = 101/360 (28%)

Query: 73   SGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNR----------G 122
            +GD G     G   A   P  +G +P +   T P    G   PR    +          G
Sbjct: 1281 TGDSGAPGPRGESGAMGLPGQEG-LPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPG 1339

Query: 123  PSAGTSQLGKKTQCRSL----FLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP--PVY 176
            PS    Q G K +  S     FL  +G        PP  P      G+  +  +P  P +
Sbjct: 1340 PSGTPGQKGSKGENGSPGLPGFLGPRG--------PPGEPGEKGVPGKEGVPGKPGEPGF 1391

Query: 177  LGNKPTP--PRQEGSFGGRPK-SQPPLPQE---TAAPAPQP-----GPTAPPARVREPG- 224
             G +  P     +G  GG+ +   P +P     T    PQ      GP  PP    +PG 
Sbjct: 1392 KGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGF 1451

Query: 225  ---RAEGASREPR---------------------------LRSRAARPPPAPGPGALSRA 254
               R E  S E                             ++S   RP P   PG     
Sbjct: 1452 PGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLP 1511

Query: 255  SRSRAAGRPG-PGFHGGEKAAAPRAPGG--GGGRNPGALGRAAPPSRARQDAWGLSGCAT 311
             R+   G PG PG  G E  + P  P G  G   +PGA G                    
Sbjct: 1512 GRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPG-------------------- 1551

Query: 312  VGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATH----GPASPPGR 367
            VGLR       G   PP   G      + +       G +GE   A H    GP  PPG+
Sbjct: 1552 VGLR-------GEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQ 1604



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 97/387 (25%), Positives = 114/387 (29%), Gaps = 72/387 (18%)

Query: 70   PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPP-LPHPGD---HHPRHRKNRGPSA 125
            P   G+ G     G L  P     +G     G A PP LP        HPR    +GP  
Sbjct: 812  PGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKG 871

Query: 126  GTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEG-GQRAIFQRP--------PVY 176
                 G   +         GL     EL P+ P       GQ      P        P +
Sbjct: 872  EKGDPGLPGE--------PGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGH 923

Query: 177  LGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAP-QPGPTAPPARVREPGR----A 226
            +G  P P    GS G     G P       ++ AA     PGP  P      PG      
Sbjct: 924  VG-APGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPG 982

Query: 227  EGASREPRLRSRAARPPPAPGPGALSRASRSR--------------AAGRPG-PGFHG-- 269
            +G   EP LR     P P     A  +   S               A G PG PG  G  
Sbjct: 983  KGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDP 1042

Query: 270  GEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQ--- 326
            G   A P  P G  G       R  P     Q   G  G       RG   + G S    
Sbjct: 1043 GIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLS 1102

Query: 327  ---------------PPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDE 371
                           PP   G      F   +   G  G  EGT    G A PPG     
Sbjct: 1103 PGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGR-EGTEGKKGEAGPPGLPGPP 1161

Query: 372  EV----GAAVLRAGSGEGSRRGLQLTP 394
             +    G+   R   GE  ++G Q  P
Sbjct: 1162 GIAGPQGSQGERGADGEVGQKGDQGHP 1188



 Score = 33.5 bits (75), Expect = 0.44
 Identities = 66/260 (25%), Positives = 79/260 (30%), Gaps = 66/260 (25%)

Query: 163 EGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARV-- 220
           E G+R +   P      KP    Q+G  G    + P   +    PA   GP   P  V  
Sbjct: 600 EKGERGLDGFP-----GKPGDTGQQGRPGPSGVAGPQGEKGDVGPA---GPPGVPGSVVQ 651

Query: 221 REPGRAEGASREPRLRSRAARPPPAPG----------------------------PGALS 252
           +E  + E  +  PR    A  PP A G                            PG L 
Sbjct: 652 QEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLG 711

Query: 253 RASRSRAAGRPGP-------------GFHGGEKAAAPRAPGGGGGRN--PGALGRAAPPS 297
                   G PGP             GF G      P  P G  G N  PG  G    P 
Sbjct: 712 LQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPG 771

Query: 298 RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE-GE--- 353
              +D  GL G   +    G+   AG       +G      F   R  +G  GE GE   
Sbjct: 772 ERGED--GLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGL 829

Query: 354 -------GTHATHGPASPPG 366
                  G     GPA PPG
Sbjct: 830 PGLKGDRGEKGEAGPAGPPG 849


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 92/331 (27%), Positives = 106/331 (32%), Gaps = 40/331 (12%)

Query: 154 PPRPPPNLQEGGQRAIFQRP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAP--- 209
           P  PP     GG +     P P  L   P      G   G+P    P     A  AP   
Sbjct: 616 PQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGE-NGKPGEPGPKGDAGAPGAPGGK 674

Query: 210 ----QPGPTAPPARVREPGRAEGASRE-PRLRSRAARPPPAPG----PGALSRASRSRAA 260
                PG   PP     PG   GA    P     AA PP  PG    PG           
Sbjct: 675 GDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGL 734

Query: 261 GRPGPGFHGGEKA--AAPRAPGGGGGRNPGALGRAAPPSRARQDA----WGLSGCATVGL 314
           G PGP    GE     A   PG  G R P   G   PP  A Q       G  G   +  
Sbjct: 735 GSPGPKGDKGEPGGPGADGVPGKDGPRGP--TGPIGPPGPAGQPGDKGEGGAPGLPGIAG 792

Query: 315 RRGDCDRAGSSQPPATSG-----------NGERCRFCRRRRRRGGGGEGEGTHATHGPAS 363
            RG     G + PP  +G            G+  R     +  GG     G     GPA 
Sbjct: 793 PRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAG 852

Query: 364 PPGRRHDE-EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGG-GRNLKSNWMSTTR 421
           PPG +  + E G+      +G    RGL   P      G     G  G++        T 
Sbjct: 853 PPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG 912

Query: 422 TPRRSGASGPKMVADQ-----TSGISRPPTA 447
            P   G SGPK  A Q     + G   PP A
Sbjct: 913 APGSPGVSGPKGDAGQPGEKGSPGAQGPPGA 943



 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 88/324 (27%), Positives = 103/324 (31%), Gaps = 65/324 (20%)

Query: 155 PRPPPNLQEGGQRAIFQRPPVYLGNKPTPPR--QEGSFGGRPKSQPPLPQETAAPAPQPG 212
           P PP      GQ  +   P    GN   P +  + G  GG     PP       P   PG
Sbjct: 563 PGPPGPSGPRGQPGVMGFPGPK-GNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPG 621

Query: 213 PTAPPARVREPG--------RAEGASREPRLRSRAARPPP-----APG-PGALSRASRSR 258
           PT P     + G           G    P    +   P P     APG PG    A    
Sbjct: 622 PTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPG 681

Query: 259 AAGRPG----PGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGL 314
             G PG    PG  GG   A P  P GG     GA G   PP  A           T GL
Sbjct: 682 ERGPPGLAGAPGLRGG---AGPPGPEGG----KGAAGPPGPPGAA----------GTPGL 724

Query: 315 RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG----EGTHATHGPASPP---GR 367
           +    +R G   P      GE           G G +G    +G     GP  PP   G+
Sbjct: 725 QGMPGERGGLGSPGPKGDKGE---------PGGPGADGVPGKDGPRGPTGPIGPPGPAGQ 775

Query: 368 RHDEEVGAAV----LRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTP 423
             D+  G A     +    G    RG    P P    GA      G+N +         P
Sbjct: 776 PGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGA-----PGQNGEPGGKGERGAP 830

Query: 424 RRSGASGPKMVADQT--SGISRPP 445
              G  GP  VA     SG + PP
Sbjct: 831 GEKGEGGPPGVAGPPGGSGPAGPP 854



 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 80/280 (28%), Positives = 94/280 (33%), Gaps = 29/280 (10%)

Query: 173  PPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASRE 232
            PP   GN P PP   GS G   K  PP P         PG + P     +PG        
Sbjct: 883  PPGSNGN-PGPPGPSGSPG---KDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKG----- 933

Query: 233  PRLRSRAARPPPAPGPGALSRASRSRAAGRPG-PGFHGGEKAAAPRAPGGGGGRNPGALG 291
                S  A+ PP   PG L  A  + A G  G PG  G   +  P+   G  G+ PGA G
Sbjct: 934  ----SPGAQGPPG-APGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGK-PGANG 987

Query: 292  RAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE 351
             +    R      GL G A      G     GS   P   G+    +  R      G   
Sbjct: 988  LSG--ERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGS-PGGKGDRGENGSPGAPG 1044

Query: 352  GEGTHATHGPASPPGRRHDE-EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFG--G 408
              G     GP  P G+  D  E G A      G    RG    P P+   G     G  G
Sbjct: 1045 APGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRG---APGPQGPRGDKGETGERG 1101

Query: 409  GRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRPPTAG 448
               +K +       P   GA G    A Q   I  P  AG
Sbjct: 1102 AAGIKGH----RGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 57/217 (26%), Positives = 70/217 (32%), Gaps = 28/217 (12%)

Query: 195 KSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALS 252
           K +  LP E  AP P  GP   P     PG   A GA      R    +P P   PG   
Sbjct: 284 KGENGLPGENGAPGPM-GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG 342

Query: 253 RASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPP-------SRARQDAWG 305
                 A G  GP    G   A  +    G   + GA G   PP        +      G
Sbjct: 343 FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAG 402

Query: 306 LSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPP 365
           + G   +   RG    AG++  P                 RGG GE  G +   G   P 
Sbjct: 403 IPGAPGLMGARGPPGPAGANGAPGL---------------RGGAGE-PGKNGAKGEPGPR 446

Query: 366 GRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGA 402
           G R   E G   +    GE  + G    P    + GA
Sbjct: 447 GER--GEAGIPGVPGAKGEDGKDGSPGEPGANGLPGA 481



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 82/316 (25%), Positives = 100/316 (31%), Gaps = 62/316 (19%)

Query: 157 PPPNLQEGGQRAIFQRPPVYLGNKPT-PPRQEGSFGGRPKSQPP-LPQETAAPAPQPGPT 214
           P P +  G   A+  +PP      PT PP  +G  G +    PP +P     P   PG  
Sbjct: 75  PNPEIPFGECCAVCPQPPT----APTRPPNGQGPQGPKGDPGPPGIPGRNGDPGI-PGQP 129

Query: 215 APPARVREPGRAEGASREPRLRSR----------------AARPPPAPGPGALSRASRSR 258
             P     PG  E     P+  S                 A  P PA  PG       S 
Sbjct: 130 GSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSG 189

Query: 259 AAGRPG-PGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRG 317
             G PG PG+ G         P G  G  PGA+G + P  +      G SG      R G
Sbjct: 190 HPGSPGSPGYQGPPGEPGQAGPSGPPGP-PGAIGPSGPAGKD-----GESG------RPG 237

Query: 318 DCDRAGSSQPPATSGNGERCRFCRRRRRRG----GGGEGE----------------GTHA 357
                G   PP   G      F   +  RG     G +GE                G   
Sbjct: 238 RPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPG 297

Query: 358 THGPASPPGRRHDEEV-GAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNW 416
             GP   PG R    + GAA  R   G     G    P P    G    F G    K   
Sbjct: 298 PMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG----FPGSPGAKGE- 352

Query: 417 MSTTRTPRRSGASGPK 432
           +    +P  +GA G +
Sbjct: 353 VGPAGSPGSNGAPGQR 368



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 79/301 (26%), Positives = 99/301 (32%), Gaps = 47/301 (15%)

Query: 91   PVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALL 150
            P   G   S G+  PP P      P      GP     Q G+K    +            
Sbjct: 890  PGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGA------------ 937

Query: 151  LELPPRPPPNLQEGGQRAI--FQRPPVYLGNKPTP-PRQEGSFGGRPKSQ-------PPL 200
             + PP  P  L   G         PP   G + +P P+      G+P +        PP 
Sbjct: 938  -QGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPG 996

Query: 201  PQET---AAPAPQPGPTAPPARVREPGR-AEGASREPRLRSRAARPPPAPG----PGALS 252
            PQ     A  A +PG    P     PGR      +  R  + +   P APG    PG + 
Sbjct: 997  PQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVG 1056

Query: 253  RASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATV 312
             A +S   G  GP    G       APG  G R  GA G   P  R  +   G  G A +
Sbjct: 1057 PAGKSGDRGESGPAGPAG-------APGPAGSR--GAPGPQGP--RGDKGETGERGAAGI 1105

Query: 313  GLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG-----EGTHATHGPASPPGR 367
               RG     G+   P  +G             RG  G       +GT    GP  PPG 
Sbjct: 1106 KGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGP 1165

Query: 368  R 368
            R
Sbjct: 1166 R 1166



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 72/254 (28%), Positives = 84/254 (33%), Gaps = 37/254 (14%)

Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
           P PP   GS GG+ +           PA  PG          PG A GA+  P LR  A 
Sbjct: 383 PGPPGINGSPGGKGEM---------GPAGIPGAPGLMGARGPPGPA-GANGAPGLRGGAG 432

Query: 241 RPPPAPGPGALSRASRSRAAGRPG-PGFHGGE-KAAAPRAPGGGGGRNPGALG-RAAPPS 297
            P      G          AG PG PG  G + K  +P  PG  G   PGA G R AP  
Sbjct: 433 EPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANG--LPGAAGERGAPGF 490

Query: 298 RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHA 357
           R      G+ G       +G     G+  P    G             R G   G G   
Sbjct: 491 RGPAGPNGIPG------EKGPAGERGAPGPAGPRG-------AAGEPGRDGVPGGPGMRG 537

Query: 358 THGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWM 417
              P SP G   D + G        GE  R G      PR   G +    G    K N  
Sbjct: 538 M--PGSPGGPGSDGKPGPP---GSQGESGRPGPPGPSGPRGQPGVM----GFPGPKGNDG 588

Query: 418 STTRTPRRSGASGP 431
           +  +   R G  GP
Sbjct: 589 APGKNGERGGPGGP 602



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 60/211 (28%), Positives = 67/211 (31%), Gaps = 58/211 (27%)

Query: 181  PTPPRQEGSFGGRPKSQPPLPQETAAPAPQ---PGPTAPPARVREPGRAEGASREPRLRS 237
            P P    G  G R +S P  P     PA     PGP  P     E G    A     ++ 
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAG----IKG 1107

Query: 238  RAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPS 297
                P     PG+   A +  A G PGP        A PR P G  G          PP 
Sbjct: 1108 HRGFPGNPGAPGSPGPAGQQGAIGSPGP--------AGPRGPVGPSG----------PPG 1149

Query: 298  RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRRRGGGGEGEGTH 356
            +      G SG              G   PP   GN GER            G EG   H
Sbjct: 1150 KD-----GTSG------------HPGPIGPPGPRGNRGER------------GSEGSPGH 1180

Query: 357  -ATHGPASPPGRRHD--EEVGAAVLRAGSGE 384
                GP  PPG        VGAA +    GE
Sbjct: 1181 PGQPGPPGPPGAPGPCCGGVGAAAIAGIGGE 1211


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 79/279 (28%), Positives = 92/279 (32%), Gaps = 56/279 (20%)

Query: 146  LCALLLELPPRPPPNLQEGGQRAIFQRPPVYL--GNKPTPPRQ--EGSFGGRPKSQPPLP 201
            LC       PRP P              PVY   G K  P      G  G  P   P LP
Sbjct: 1233 LCQASFTTQPRPEPC-------------PVYCPKGQKGEPGEMGLRGQVG--PPGDPGLP 1277

Query: 202  QETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAG 261
              T A    PGP  PP        A+G    P    R   P  A  PG         + G
Sbjct: 1278 GRTGA----PGPQGPPG----SATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPG 1329

Query: 262  RPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDR 321
             PGP    GE+   PR P G  G     +G   P    R+   G SG        GD   
Sbjct: 1330 LPGPRGDPGER--GPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGP 1387

Query: 322  AGSSQPPATSGNGERCRFCRRRRRRGGGGEGE--------------GTHATHGPASPPGR 367
             G    P T+  G++      R  RG  G GE              G+    GP  PPG+
Sbjct: 1388 RGPPGLPGTAMKGDK----GDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGK 1443

Query: 368  ---RHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL 403
               + D E GA  L    G    +G      PR   GA+
Sbjct: 1444 KGEKGDSEDGAPGLPGQPGSPGEQG------PRGPPGAI 1476



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 89/372 (23%), Positives = 117/372 (31%), Gaps = 89/372 (23%)

Query: 91   PVAKGSVPSEGRATPPLPHPGDHHPRHRKNR----------GPSAGTSQLGKKTQCRSLF 140
            P  +G +   GRA PP    GD  P   K            GP     ++G+K       
Sbjct: 1591 PGDRGPIGLTGRAGPP----GDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGD----- 1641

Query: 141  LRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP----PVYLGNKPTPPRQEGSFGGRPKS 196
                       E PP  P    + G+R +   P    PV        P ++G  G    S
Sbjct: 1642 -----------EGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSS 1690

Query: 197  QPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA---------------- 240
             P           +PGP  PP R+ + G       EP  R +                  
Sbjct: 1691 GPK------GDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGE 1744

Query: 241  ------RPPPAP--GPGALSRASRSRAAGRPG----PGFHGGEKAAAPRAPGGGGGR--N 286
                  R PP P   PG    A      G PG     G  G   AA P  P G  G+  +
Sbjct: 1745 RGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGD 1804

Query: 287  PGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRR 345
            PG  G   P  R  Q   G SG   +  + G+  + G +      G+ GE  R   +   
Sbjct: 1805 PGRDG--LPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDS 1862

Query: 346  RGGGGEG----------------EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRG 389
               G EG                +G     GP  PPG+      G    +   GE   +G
Sbjct: 1863 GASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKG 1922

Query: 390  LQLTPPPRRVHG 401
             Q  P  R + G
Sbjct: 1923 EQGLPGERGLRG 1934



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 83/316 (26%), Positives = 107/316 (33%), Gaps = 64/316 (20%)

Query: 69   NPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHH----------PRHR 118
            +P R+G+ G   A G   +P  P  +G  P E     P   PG             P  +
Sbjct: 1309 SPGRAGNPGTPGAPGLKGSPGLPGPRGD-PGERGPRGPKGEPGAPGQVIGGEGPGLPGRK 1367

Query: 119  KNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNL----QEGGQRAIFQRPP 174
             + GPS      G                  L +  PR PP L     +G +    +R P
Sbjct: 1368 GDPGPSGPPGPRGP-----------------LGDPGPRGPPGLPGTAMKGDKGDRGERGP 1410

Query: 175  VYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAE-GASREP 233
                  P P       GG    +P LP    +P PQ GP  PP +  E G +E GA   P
Sbjct: 1411 ------PGPGE-----GGIAPGEPGLPGLPGSPGPQ-GPVGPPGKKGEKGDSEDGAPGLP 1458

Query: 234  RLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKA-AAPRAPGGGGGRNPGALGR 292
                      P   PGA+         G PGP    GEK    P  P G  G  PG  GR
Sbjct: 1459 GQPGSPGEQGPRGPPGAIGPKG---DRGFPGPLGEAGEKGERGPPGPAGSRGL-PGVAGR 1514

Query: 293  AAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG 352
              P ++  +   G +G      R+G+    G    PA  G          +  +G  G  
Sbjct: 1515 --PGAKGPEGPPGPTG------RQGEKGEPGRPGDPAVVGPA----VAGPKGEKGDVGPA 1562

Query: 353  --EGTHATHGPASPPG 366
               G     G   PPG
Sbjct: 1563 GPRGATGVQGERGPPG 1578



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 86/329 (26%), Positives = 104/329 (31%), Gaps = 69/329 (20%)

Query: 155  PRPPPNLQEGGQRAIFQRPPVYLGNK--PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
            P   P LQ  G R     PP  +G    P PP   G  G      P  PQ  +    +PG
Sbjct: 2163 PEGKPGLQ--GPRG----PPGPVGGHGDPGPPGAPGLAG------PAGPQGPSGLKGEPG 2210

Query: 213  PTAPPAR-VREPGRAEGASREPRLRSRAARPPPAPG-PGALSRASRSRAAGRPG------ 264
             T PP R +  P  A G    P   S    P  +PG PG +    +  A GR G      
Sbjct: 2211 ETGPPGRGLTGPTGAVGLPGPPG-PSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDG 2269

Query: 265  ----PGFHGGEKAAAPRAPGGGGGRN----------PGALGRAAPPSRARQDAWGLSGC- 309
                PG  G      P  P G  G            PGA G    P     D  G  G  
Sbjct: 2270 DRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAK 2329

Query: 310  ATVGL-----RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASP 364
               GL      +G+  RAG    P   G            +   G  G G   + GP  P
Sbjct: 2330 GDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGA-----PGPKGFKGDPGVGVPGSPGPPGP 2384

Query: 365  PGRRHDEEV----GAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
            PG + D  +    GA  +    G+   RG    P P           G R L        
Sbjct: 2385 PGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGP----------SGERGLAG------ 2428

Query: 421  RTPRRSGASGPKMVADQTSGISRPPTAGI 449
              P R G  GP         +  P  +G+
Sbjct: 2429 -PPGREGIPGPLGPPGPPGSVGPPGASGL 2456



 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 56/214 (26%), Positives = 66/214 (30%), Gaps = 34/214 (15%)

Query: 183  PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARV--------------------RE 222
            PP ++G  G      P LP +  +P  Q GP  PP  +                    R 
Sbjct: 1440 PPGKKGEKGDSEDGAPGLPGQPGSPGEQ-GPRGPPGAIGPKGDRGFPGPLGEAGEKGERG 1498

Query: 223  PGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPR----- 277
            P    G+   P +  R     P   PG   R       GRPG     G   A P+     
Sbjct: 1499 PPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGD 1558

Query: 278  -APGGGGGRNPGALGRAAPPSRARQDAWGLSG----CATVGLRRGDCDRAGSSQPPATSG 332
              P G  G   G  G   PP        G  G       +GL  G     G S PP   G
Sbjct: 1559 VGPAGPRGAT-GVQGERGPPGLVLPGDPGPKGDPGDRGPIGL-TGRAGPPGDSGPPGEKG 1616

Query: 333  NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG 366
            +  R         RG  GE  G     GP   PG
Sbjct: 1617 DPGRPGPPGPVGPRGRDGE-VGEKGDEGPPGDPG 1649



 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 64/213 (30%), Positives = 73/213 (34%), Gaps = 34/213 (15%)

Query: 181  PTPPRQEGSFGGRPKSQPP-------LPQETAAPAPQ--PGPTAPPARVREPGRAEGASR 231
            P P R+ G  G   +  PP        P E      +  PGP  PP      G A G  R
Sbjct: 1972 PVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPP------GLALG-ER 2024

Query: 232  EPRLRSRAARPPPAPG-PGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGAL 290
             P   S  A  P  PG PG   RA     AGRPG     GEK         G    PG  
Sbjct: 2025 GPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTP 2084

Query: 291  GRAAPPS---RARQDAWGLSG-CATVGLR--RGDCDRAGSSQPPATSG----NGERCRFC 340
            G   PP       +   GLSG     GL+  +G+    G   P    G     G+R    
Sbjct: 2085 GPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPG 2144

Query: 341  RRRRRRGGGGEG-------EGTHATHGPASPPG 366
             R +    G  G       EG     GP  PPG
Sbjct: 2145 PRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPG 2177



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 55/211 (26%), Positives = 64/211 (30%), Gaps = 33/211 (15%)

Query: 186  QEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRA-EGASREPRLRSRAARPPP 244
            ++G  G + +  PP    T  P   PGP  P   V EPG    G    P L+     P  
Sbjct: 2065 EKGERGEQGRDGPPGLPGTPGP---PGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPG- 2120

Query: 245  APGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAW 304
                   S   +     R  PG  G      PR   G  G  PG  G A P  +      
Sbjct: 2121 -------SNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGL-PGERGMAGPEGKP----- 2167

Query: 305  GLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG-EGTHATHGPAS 363
            GL G        G     G   PP   G                G +G  G     G   
Sbjct: 2168 GLQGPRG---PPGPVGGHGDPGPPGAPG-----------LAGPAGPQGPSGLKGEPGETG 2213

Query: 364  PPGRRHDEEVGAAVLRAGSGEGSRRGLQLTP 394
            PPGR      GA  L    G     G Q +P
Sbjct: 2214 PPGRGLTGPTGAVGLPGPPGPSGLVGPQGSP 2244



 Score = 32.3 bits (72), Expect = 0.98
 Identities = 42/148 (28%), Positives = 50/148 (33%), Gaps = 37/148 (25%)

Query: 212  GPTAPPARVREPGRA--EGASREPRLRSRAARPPPAPGPGALSRASRSRAA-GRPGPGFH 268
            G   PP R   PG A  +G   EP +  ++     APG   L      R   G+PGP   
Sbjct: 2644 GEAGPPGR---PGLAGHKGEMGEPGVPGQSG----APGKEGLIGPKGDRGFDGQPGPKGD 2696

Query: 269  GGEK--------------------AAAPRAPGGGGGRNP----GALGRAAPPSRARQDAW 304
             GEK                    A  P  PG  G R P    G  G   PP      A 
Sbjct: 2697 QGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAP 2756

Query: 305  GLSGCATVGLRRGDCDRAGSSQPPATSG 332
            G+ G       RG+  R G + P    G
Sbjct: 2757 GVPGAPG---ERGEQGRPGPAGPRGEKG 2781


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 64/220 (29%), Positives = 83/220 (37%), Gaps = 28/220 (12%)

Query: 152 ELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQP 211
           E  P  PP L   G  ++F   P   G +   P+ E    G P  +P L        PQ 
Sbjct: 323 EAGPAGPPGLP--GTTSLFTPHPRMPGEQG--PKGEKGDPGLP-GEPGLQGRPGELGPQ- 376

Query: 212 GPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHG 269
           GPT PP    + G   A GA+  P        P P+  PG++         G PG     
Sbjct: 377 GPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPG---LRGTPGKDGER 433

Query: 270 GEKAAAPR--APGGGGGR-NPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQ 326
           GEK AA    +PG  G R +PGA G   PP + +    GL G   +    G     G+  
Sbjct: 434 GEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPG 493

Query: 327 PPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG 366
            P + G+               G  G G     GP+ PPG
Sbjct: 494 IPGSPGS--------------RGDPGIGVAGPPGPSGPPG 519



 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 92/350 (26%), Positives = 120/350 (34%), Gaps = 81/350 (23%)

Query: 69  NPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPH--PGDHH-------PRHRK 119
           +P   G +G     G    P  P ++G  P  G A PP P   PGD         P    
Sbjct: 476 SPGLPGPLGTKGDRGAPGIPGSPGSRGD-PGIGVAGPPGPSGPPGDKGSPGSRGLPGFPG 534

Query: 120 NRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPP--PNLQEGGQRAIFQRPPVYL 177
            +GP AG   L        + L  K +C    + PP PP  P L            P + 
Sbjct: 535 PQGP-AGRDGLSSLLSPGDINLLAKDVCN---DCPPGPPGLPGL------------PGFK 578

Query: 178 GNKPTP--PRQEGSFGGRPKSQPP-LPQETAAPAPQ-----------------------P 211
           G+K  P  P +EG+ G + ++ PP LP       PQ                       P
Sbjct: 579 GDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVP 638

Query: 212 GPTAPPARVREPGR--AEGASREPRLRSRAARP-PPAPG-----PGALSRASRSRAAGRP 263
           G   PP     PG     GA+  P ++    +  PP P      PG      +    G+P
Sbjct: 639 GFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKP 698

Query: 264 GPGFHGGEKAAAPRAPGGGGGRNP----GALGRA-APPSRARQDAWGLSGCATVGLRRGD 318
           GP    G KA  P  PG  G R P    G  G + AP  R    A GL G   +  + GD
Sbjct: 699 GPPGEPG-KAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGD 757

Query: 319 CDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRR 368
               G   P    G               G     G+    GP+  PG++
Sbjct: 758 TGPTGPQGPQGPRG-------------PPGKNGSPGSPGEPGPSGTPGQK 794



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 97/374 (25%), Positives = 124/374 (33%), Gaps = 67/374 (17%)

Query: 72  RSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLG 131
           R G+ G+    G   AP FP  +G    +G     L  PG    R  K     AG   L 
Sbjct: 278 RPGEKGEAGLPG---APGFPGVRGEKGDQGEKGE-LGLPGLKGDRGEKGEAGPAGPPGLP 333

Query: 132 KKTQCRSLFLRTKGLCALLLELPPRPPPNLQEG-----GQRAIFQRPPVYLGNKPTPPR- 185
             T   SLF            +P    P  ++G     G+  +  RP       PT P  
Sbjct: 334 GTT---SLFTPHP-------RMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPG 383

Query: 186 ---QEGSFGGRPKS-QPPLPQETAAPAPQ--PGPTAPPARVREPGR-----AEGASRE-- 232
              QEG+ G    +  P  P    AP P   PG    P     PG+      +GA+ E  
Sbjct: 384 AKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEG 443

Query: 233 ------PRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN 286
                 PR    A   P  PG G         + G PGP    G++ A P  PG  G R 
Sbjct: 444 SPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGA-PGIPGSPGSRG 502

Query: 287 PGALGRAAPPSRA----RQDAWGLSGCATVGLRRGDCDRAGSSQ---------------- 326
              +G A PP  +     + + G  G       +G   R G S                 
Sbjct: 503 DPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGLSSLLSPGDINLLAKDVCN 562

Query: 327 --PPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEV----GAAVLRA 380
             PP   G      F   +   G  G  EGT    G A PPG      +    G+   R 
Sbjct: 563 DCPPGPPGLPGLPGFKGDKGVPGKPGR-EGTEGKKGEAGPPGLPGPPGIAGPQGSQGERG 621

Query: 381 GSGEGSRRGLQLTP 394
             GE  ++G Q  P
Sbjct: 622 ADGEVGQKGDQGHP 635



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 89/360 (24%), Positives = 115/360 (31%), Gaps = 101/360 (28%)

Query: 73   SGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNR----------G 122
            +GD G     G   A   P  +G +P +   T P    G   PR    +          G
Sbjct: 728  TGDSGAPGPRGESGAMGLPGQEG-LPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPG 786

Query: 123  PSAGTSQLGKKTQCRSL----FLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP--PVY 176
            PS    Q G K +  S     FL  +G        PP  P      G+  +  +P  P +
Sbjct: 787  PSGTPGQKGSKGENGSPGLPGFLGPRG--------PPGEPGEKGVPGKEGVPGKPGEPGF 838

Query: 177  LGNKPTP--PRQEGSFGGRPK-SQPPLPQE---TAAPAPQP-----GPTAPPARVREPG- 224
             G +  P     +G  GG+ +   P +P     T    PQ      GP  PP    +PG 
Sbjct: 839  KGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGF 898

Query: 225  ---RAEGASREPR---------------------------LRSRAARPPPAPGPGALSRA 254
               R E  S E                             ++S   RP P   PG     
Sbjct: 899  PGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLP 958

Query: 255  SRSRAAGRPG-PGFHGGEKAAAPRAPGG--GGGRNPGALGRAAPPSRARQDAWGLSGCAT 311
             R+   G PG PG  G E  + P  P G  G   +PGA G                    
Sbjct: 959  GRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPG-------------------- 998

Query: 312  VGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATH----GPASPPGR 367
            VGLR       G   PP   G      + +       G +GE   A H    GP  PPG+
Sbjct: 999  VGLR-------GEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQ 1051



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 79/313 (25%), Positives = 98/313 (31%), Gaps = 70/313 (22%)

Query: 153 LPPRPPP--NLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ 210
           L PR  P  N+ +G Q A  +     L +   P             Q  +P+ T      
Sbjct: 171 LGPRTDPWENVDQGAQGACGRGNTSVLPSSVAP-------------QCSMPKGTGHEFSA 217

Query: 211 PGPTAPPARVREPGRAE---GASREPRLRSRAARPPPA-----PG-PGALSRASRSRAAG 261
              T  PA  R   RA     A   P L+     P        PG PG          AG
Sbjct: 218 ALGTQGPADQRADARASCILAAKTAPGLKQLNGEPGERGEDGLPGKPGLRGEIGEQGLAG 277

Query: 262 RPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDR 321
           RPG     GE A  P APG  G R            +  Q   G  G   +   RG+   
Sbjct: 278 RPG---EKGE-AGLPGAPGFPGVRG----------EKGDQGEKGELGLPGLKGDRGEKGE 323

Query: 322 AGSSQPPATSGNGERCRFCRRRRRRGGGG-EGE----------------GTHATHGPASP 364
           AG + PP   G      F    R  G  G +GE                G     GP  P
Sbjct: 324 AGPAGPPGLPGTTSL--FTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGP 381

Query: 365 PGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPR 424
           PG +  E  GA      +G     G    P P    G++    G   L+        TP 
Sbjct: 382 PGAKGQE--GAHGAPGAAGNPGAPGHVGAPGPSGPPGSV----GAPGLRG-------TPG 428

Query: 425 RSGASGPKMVADQ 437
           + G  G K  A +
Sbjct: 429 KDGERGEKGAAGE 441


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 65/243 (26%), Positives = 89/243 (36%), Gaps = 45/243 (18%)

Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
           P  PPP   +G +    + PP     KP  P  +G  G +P+  PP P +   P PQ G 
Sbjct: 98  PQGPPP---QGDKSRSPRSPP----GKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGN 148

Query: 213 -PTAPPARVREPGRAEGASREPRLRSRAARPPPA-----PGPGALSRASRSRAAGRP-GP 265
            P  PP     PG+ +G   +   +SR++R PP      P  G           G+P GP
Sbjct: 149 KPQGPPP----PGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 204

Query: 266 GFHGGEKAAAPRAPGGGGG------------RNPGALGRAAPPSRARQDAWGLSGCATVG 313
              GG K   P  PG   G            R+P    +  PP    Q           G
Sbjct: 205 PPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQ---GPPPPPG 261

Query: 314 LRRGDCDRAGSS-QPPATSG--------NGERCRFCRRRRRRGGGGEGEGTHATHGPASP 364
             +G   + G+  Q P   G         G + R  R    +  G   +G +   GP  P
Sbjct: 262 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPP 321

Query: 365 PGR 367
           PG+
Sbjct: 322 PGK 324



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 47/150 (31%), Positives = 64/150 (42%), Gaps = 18/150 (12%)

Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
           P  PPP   +GG ++   R P     KP  P  +G  G +P+  PP P +   P PQ G 
Sbjct: 283 PQGPPP---QGGSKSRSSRSP---PGKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGN 334

Query: 213 -PTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGE 271
            P  PP     PG+ +G   +   +SR+AR PP   P    +   +   G P P    G 
Sbjct: 335 KPQGPP----PPGKPQGPPPQGGSKSRSARSPPGK-PQGPPQQEGNNPQGPPPP---AGG 386

Query: 272 KAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
               P+AP  G  + P    +   PSR  Q
Sbjct: 387 NPQQPQAPPAGQPQGPPRPPQGGRPSRPPQ 416



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 51/157 (32%), Positives = 66/157 (42%), Gaps = 24/157 (15%)

Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
           P  PPP      Q A  + PP     KP  P  +G  G +P+  PP P +   P PQ G 
Sbjct: 221 PQGPPPQGDNKSQSA--RSPP----GKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGN 272

Query: 213 -PTAPPARVREPGRAEGASREPRLRSRAARPPPA-----PGPGALSRASRSRAAGRP-GP 265
            P  PP     PG+ +G   +   +SR++R PP      P  G           G+P GP
Sbjct: 273 KPQGPPP----PGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 328

Query: 266 GFHGGEKAAAPRAPGGGGGRNP--GALGRAA--PPSR 298
              GG K   P  PG   G  P  G+  R+A  PP +
Sbjct: 329 PPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGK 365



 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 52/166 (31%), Positives = 64/166 (38%), Gaps = 33/166 (19%)

Query: 155 PRPPPNLQEGGQRAIFQRPPVYLGNKPT----------PPRQEGSFGGRPKSQPPLPQET 204
           P PPP   +G        PP   GNKP           PP Q GS     +S P  PQ  
Sbjct: 256 PPPPPGKPQG--------PPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQ-- 305

Query: 205 AAPAPQPG--PTAPPARVREPGRAEGASREPRLRSRAARPP-----PAPGPGALSRASRS 257
             P PQ G  P  PP     PG+ +G   +   + +   PP     P P  G+ SR++RS
Sbjct: 306 -GPPPQGGNQPQGPPP---PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARS 361

Query: 258 RAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGA--LGRAAPPSRARQ 301
                 GP    G     P  P GG  + P A   G+   P R  Q
Sbjct: 362 PPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQ 407



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 60/225 (26%), Positives = 79/225 (35%), Gaps = 59/225 (26%)

Query: 148 ALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
           +L+   P   PP   +GG +   Q PP   G    PP Q G+   +P+  PP P +   P
Sbjct: 30  SLIAGNPQGAPP---QGGNKP--QGPPSPPGKPQGPPPQGGN---QPQGPPPPPGKPQGP 81

Query: 208 APQPG--PTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265
            PQ G  P  PP     PG+ +G             PPP    G  SR+ RS      GP
Sbjct: 82  PPQGGNKPQGPPP----PGKPQG-------------PPPQ---GDKSRSPRSPPGKPQGP 121

Query: 266 GFHGGEKAAAPRAPGG---GGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRA 322
              GG +   P  P G   G     G   +  PP                          
Sbjct: 122 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP-------------------------P 156

Query: 323 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGR 367
           G  Q P   G+  + R  R    +  G   +G +   GP  PPG+
Sbjct: 157 GKPQGPPPQGD-NKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGK 200


>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
           sapiens]
          Length = 247

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 50/155 (32%), Positives = 66/155 (42%), Gaps = 19/155 (12%)

Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGP 213
           P RPPP   +GG ++    PP   G    PP Q G+   RP   PP P +   P PQ G 
Sbjct: 99  PERPPP---QGGNQSQGTPPPP--GKPERPPPQGGNQSHRP---PPPPGKPERPPPQGGN 150

Query: 214 TA--PPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGE 271
            +  PP     PG+ EG   +   +SR+AR PP   P    +   ++  G P PG   G 
Sbjct: 151 QSQGPPPH---PGKPEGPPPQEGNKSRSARSPPGK-PQGPPQQEGNKPQGPPPPGKPQGP 206

Query: 272 KAAA-----PRAPGGGGGRNPGALGRAAPPSRARQ 301
             A      P+AP  G  + P    +   P R  Q
Sbjct: 207 PPAGGNPQQPQAPPAGKPQGPPPPPQGGRPPRPAQ 241



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 47/173 (27%), Positives = 66/173 (38%), Gaps = 40/173 (23%)

Query: 156 RPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLP------------QE 203
           +P     +GG +   QRPP   G    PP Q    GG     PP P             +
Sbjct: 35  KPEGRRPQGGNQP--QRPPPPPGKPQGPPPQ----GGNQSQGPPPPPGKPEGRPPQGGNQ 88

Query: 204 TAAPAPQPG-PTAPPAR--------VREPGRAEGASREPRLRSRAARPPPAPG-PGALSR 253
           +  P P PG P  PP +           PG+ E     P+  +++ RPPP PG P     
Sbjct: 89  SQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPE--RPPPQGGNQSHRPPPPPGKPERPPP 146

Query: 254 ASRSRAAGRP-------GPGFHGGEKAAAPRAPGG---GGGRNPGALGRAAPP 296
              +++ G P       GP    G K+ + R+P G   G  +  G   +  PP
Sbjct: 147 QGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPP 199



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 48/163 (29%), Positives = 58/163 (35%), Gaps = 44/163 (26%)

Query: 70  PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEG--RATPPLPHPGDHHPRHRKNRGPSAGT 127
           P+R    G   +H   R P  P      P +G  ++  P PHPG       K  GP    
Sbjct: 120 PERPPPQGGNQSH---RPPPPPGKPERPPPQGGNQSQGPPPHPG-------KPEGPPP-- 167

Query: 128 SQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQE 187
            Q G K++                    R PP   +G        PP   GNKP  P   
Sbjct: 168 -QEGNKSRSA------------------RSPPGKPQG--------PPQQEGNKPQGPPPP 200

Query: 188 GSFGGRPKS--QPPLPQETAAPAPQPGPTAPPARVREPGRAEG 228
           G   G P +   P  PQ   A  PQ GP  PP   R P  A+G
Sbjct: 201 GKPQGPPPAGGNPQQPQAPPAGKPQ-GPPPPPQGGRPPRPAQG 242



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 24/89 (26%)

Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFG------GRPKSQPPL---PQET 204
           P  PPP  QEG +    + PP   G    PP+QEG+        G+P+  PP    PQ+ 
Sbjct: 162 PEGPPP--QEGNKSRSARSPP---GKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQP 216

Query: 205 AAPA----------PQPGPTAPPARVREP 223
            AP           PQ G    PA+ ++P
Sbjct: 217 QAPPAGKPQGPPPPPQGGRPPRPAQGQQP 245


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 76/266 (28%), Positives = 97/266 (36%), Gaps = 42/266 (15%)

Query: 193 RPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASR------EPRLRSRAARPPPAP 246
           RP ++PP P+  + P      T   A    P + +  SR       PR    +AR  PAP
Sbjct: 80  RPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139

Query: 247 G-PGALSRASRSRAA-GRPGPGFHGGEKAAAPRAPGGGGGRNPGAL---GRAAPPSRARQ 301
             P A +R +  RAA G  GPG  G         P   GG+ P       RAAP   AR 
Sbjct: 140 AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARP 199

Query: 302 -------------DAWGLSGCATVGLRRGDCDRAGSS----------QPPATSGNGERCR 338
                           G   C T G   G    A SS          QP    G   R R
Sbjct: 200 FRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVR 259

Query: 339 FCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRR 398
            C  RRR  G G   G      PA PP RR+ + +    L  G G  S     +  P R 
Sbjct: 260 GCGGRRRSNGQGTQPGCRLL-SPA-PPRRRYRKPL---TLSFGGGVSSPTH-PVVAPRRH 313

Query: 399 VHGALQRFGGGRNLKSNWMSTTRTPR 424
              ++ RF  G   +++ + T   P+
Sbjct: 314 FPRSVPRFPAG--FRTHSLGTAPKPK 337


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 76/266 (28%), Positives = 97/266 (36%), Gaps = 42/266 (15%)

Query: 193 RPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASR------EPRLRSRAARPPPAP 246
           RP ++PP P+  + P      T   A    P + +  SR       PR    +AR  PAP
Sbjct: 80  RPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139

Query: 247 G-PGALSRASRSRAA-GRPGPGFHGGEKAAAPRAPGGGGGRNPGAL---GRAAPPSRARQ 301
             P A +R +  RAA G  GPG  G         P   GG+ P       RAAP   AR 
Sbjct: 140 AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARP 199

Query: 302 -------------DAWGLSGCATVGLRRGDCDRAGSS----------QPPATSGNGERCR 338
                           G   C T G   G    A SS          QP    G   R R
Sbjct: 200 FRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVR 259

Query: 339 FCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRR 398
            C  RRR  G G   G      PA PP RR+ + +    L  G G  S     +  P R 
Sbjct: 260 GCGGRRRSNGQGTQPGCRLL-SPA-PPRRRYRKPL---TLSFGGGVSSPTH-PVVAPRRH 313

Query: 399 VHGALQRFGGGRNLKSNWMSTTRTPR 424
              ++ RF  G   +++ + T   P+
Sbjct: 314 FPRSVPRFPAG--FRTHSLGTAPKPK 337


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 76/266 (28%), Positives = 97/266 (36%), Gaps = 42/266 (15%)

Query: 193 RPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASR------EPRLRSRAARPPPAP 246
           RP ++PP P+  + P      T   A    P + +  SR       PR    +AR  PAP
Sbjct: 80  RPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139

Query: 247 G-PGALSRASRSRAA-GRPGPGFHGGEKAAAPRAPGGGGGRNPGAL---GRAAPPSRARQ 301
             P A +R +  RAA G  GPG  G         P   GG+ P       RAAP   AR 
Sbjct: 140 AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARP 199

Query: 302 -------------DAWGLSGCATVGLRRGDCDRAGSS----------QPPATSGNGERCR 338
                           G   C T G   G    A SS          QP    G   R R
Sbjct: 200 FRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVR 259

Query: 339 FCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRR 398
            C  RRR  G G   G      PA PP RR+ + +    L  G G  S     +  P R 
Sbjct: 260 GCGGRRRSNGQGTQPGCRLL-SPA-PPRRRYRKPL---TLSFGGGVSSPTH-PVVAPRRH 313

Query: 399 VHGALQRFGGGRNLKSNWMSTTRTPR 424
              ++ RF  G   +++ + T   P+
Sbjct: 314 FPRSVPRFPAG--FRTHSLGTAPKPK 337


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 64/218 (29%), Positives = 83/218 (38%), Gaps = 33/218 (15%)

Query: 123 PSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPT 182
           PS G   LG++T       +  G  A     P   PP    G QR   Q PP  L  +P 
Sbjct: 437 PSPGALPLGRQTS-----QQPAGPPAQQRPPPQGGPPQPGPGPQR---QGPP--LQQRPP 486

Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRL----RSR 238
           P  Q+   G  P +  PLPQ    P+P   P  P ++   P + +G    P         
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQR--LPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPP 544

Query: 239 AARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
           AARPP +P P         R AG P       + + +  AP    G  PG   R  PP  
Sbjct: 545 AARPPASPSP--------QRQAGPPQA---TRQTSVSGPAPPKASGAPPGGQQRQGPP-- 591

Query: 299 ARQDAWGLSGCATVGLRRGDCDRAG--SSQPPATSGNG 334
             Q   G +G      + G   R G  ++Q P  SG G
Sbjct: 592 --QKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPG 627



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 57/208 (27%), Positives = 73/208 (35%), Gaps = 29/208 (13%)

Query: 178 GNKPTPP-----RQEGSFGGRPKSQPPLPQETAAPAPQPGP--TAPPARVREPGRAE--- 227
           G  P+P      RQ       P +Q   P +   P P PGP    PP + R P + +   
Sbjct: 434 GQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHL 493

Query: 228 ---GASREPRLRSRAARPPPAPGPGALSRASRSRAAG---RPGPGFHGGEKAAAPRAPGG 281
              G      L  R   P  AP   A   A  ++  G   RP  G  G   AA P A   
Sbjct: 494 SGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPA--- 550

Query: 282 GGGRNPGALGRAAPPSRARQDAWGLSGCA---TVGLRRGDCDRAGSSQ-PPATSGNGERC 337
               +P    +A PP   RQ +  +SG A     G   G   R G  Q PP  +G   + 
Sbjct: 551 ----SPSPQRQAGPPQATRQTS--VSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQA 604

Query: 338 RFCRRRRRRGGGGEGEGTHATHGPASPP 365
                  R G     +   +  GPA  P
Sbjct: 605 SQAGPVPRTGPPTTQQPRPSGPGPAGRP 632



 Score = 36.6 bits (83), Expect = 0.052
 Identities = 46/189 (24%), Positives = 65/189 (34%), Gaps = 40/189 (21%)

Query: 87  APVFPVAKGSVPSEGRATPPLPHPGDHH--PRHRKNRGPS----AGTSQLGKKTQCRSLF 140
           AP  P ++ + P++G+     P  G     P  R    PS    AG  Q  ++T      
Sbjct: 514 APQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSG-- 571

Query: 141 LRTKGLCALLLELPPRPPP--NLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQP 198
                         P PP       GGQ+   Q PP        P RQ    G  P++ P
Sbjct: 572 --------------PAPPKASGAPPGGQQR--QGPPQKPPGPAGPTRQASQAGPVPRTGP 615

Query: 199 PLPQETAAPAPQPGPTAPPARVREPGR--------AEGASREPRLRSRAA------RPPP 244
           P  Q+     P P     P   ++P +        A G    P+L    +       P P
Sbjct: 616 PTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAFNLPEP 675

Query: 245 APGPGALSR 253
           AP   +LS+
Sbjct: 676 APPRPSLSQ 684



 Score = 35.8 bits (81), Expect = 0.088
 Identities = 54/223 (24%), Positives = 71/223 (31%), Gaps = 51/223 (22%)

Query: 91  PVAKGSVPSEG----RATPPLPH-PGDHHPRHRKNRGPSAGT-----------------S 128
           P  +G  P  G    R  PPL   P     +H    GP AG+                 S
Sbjct: 461 PPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPAS 520

Query: 129 QLGKKTQCRSLFLR--TKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQ 186
           Q    TQ +    R    G  A     PP  P   ++ G     ++  V   + P PP+ 
Sbjct: 521 QAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV---SGPAPPKA 577

Query: 187 EGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP 246
            G+  G  + Q P       P   PGP  P  +  + G        PR      + P   
Sbjct: 578 SGAPPGGQQRQGP-------PQKPPGPAGPTRQASQAGPV------PRTGPPTTQQPRPS 624

Query: 247 GPGALSRASRSRAAGRPGPGF--HGGEKAAAPRAPGGGGGRNP 287
           GPG          AGRP P       +    P     GG  +P
Sbjct: 625 GPG---------PAGRPKPQLAQKPSQDVPPPATAAAGGPPHP 658



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 25/111 (22%)

Query: 200 LPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARP---PPAPGPG------- 249
           LP        +P P  PP     PG   G       RS    P   P AP PG       
Sbjct: 17  LPNGYMTDLQRPQPPPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGF 76

Query: 250 --ALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
             +LS A +   A            AAA  +   GGG   G  GR    SR
Sbjct: 77  FSSLSNAVKQTTAA-----------AAATFSEQVGGG--SGGAGRGGAASR 114


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 64/218 (29%), Positives = 83/218 (38%), Gaps = 33/218 (15%)

Query: 123 PSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPT 182
           PS G   LG++T       +  G  A     P   PP    G QR   Q PP  L  +P 
Sbjct: 437 PSPGALPLGRQTS-----QQPAGPPAQQRPPPQGGPPQPGPGPQR---QGPP--LQQRPP 486

Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRL----RSR 238
           P  Q+   G  P +  PLPQ    P+P   P  P ++   P + +G    P         
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQR--LPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPP 544

Query: 239 AARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
           AARPP +P P         R AG P       + + +  AP    G  PG   R  PP  
Sbjct: 545 AARPPASPSP--------QRQAGPPQA---TRQTSVSGPAPPKASGAPPGGQQRQGPP-- 591

Query: 299 ARQDAWGLSGCATVGLRRGDCDRAG--SSQPPATSGNG 334
             Q   G +G      + G   R G  ++Q P  SG G
Sbjct: 592 --QKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPG 627



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 57/208 (27%), Positives = 73/208 (35%), Gaps = 29/208 (13%)

Query: 178 GNKPTPP-----RQEGSFGGRPKSQPPLPQETAAPAPQPGP--TAPPARVREPGRAE--- 227
           G  P+P      RQ       P +Q   P +   P P PGP    PP + R P + +   
Sbjct: 434 GQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHL 493

Query: 228 ---GASREPRLRSRAARPPPAPGPGALSRASRSRAAG---RPGPGFHGGEKAAAPRAPGG 281
              G      L  R   P  AP   A   A  ++  G   RP  G  G   AA P A   
Sbjct: 494 SGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPA--- 550

Query: 282 GGGRNPGALGRAAPPSRARQDAWGLSGCA---TVGLRRGDCDRAGSSQ-PPATSGNGERC 337
               +P    +A PP   RQ +  +SG A     G   G   R G  Q PP  +G   + 
Sbjct: 551 ----SPSPQRQAGPPQATRQTS--VSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQA 604

Query: 338 RFCRRRRRRGGGGEGEGTHATHGPASPP 365
                  R G     +   +  GPA  P
Sbjct: 605 SQAGPVPRTGPPTTQQPRPSGPGPAGRP 632



 Score = 37.7 bits (86), Expect = 0.023
 Identities = 42/174 (24%), Positives = 61/174 (35%), Gaps = 34/174 (19%)

Query: 87  APVFPVAKGSVPSEGRATPPLPHPGDHH--PRHRKNRGPS----AGTSQLGKKTQCRSLF 140
           AP  P ++ + P++G+     P  G     P  R    PS    AG  Q  ++T      
Sbjct: 514 APQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSG-- 571

Query: 141 LRTKGLCALLLELPPRPPP--NLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQP 198
                         P PP       GGQ+   Q PP        P RQ    G  P++ P
Sbjct: 572 --------------PAPPKASGAPPGGQQR--QGPPQKPPGPAGPTRQASQAGPVPRTGP 615

Query: 199 PLPQETAAPAPQPGPTAPPARVREPGR--------AEGASREPRLRSRAARPPP 244
           P  Q+     P P     P   ++P +        A G    P+L++  A+  P
Sbjct: 616 PTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASPAQAQP 669



 Score = 36.2 bits (82), Expect = 0.068
 Identities = 55/229 (24%), Positives = 72/229 (31%), Gaps = 49/229 (21%)

Query: 91  PVAKGSVPSEG----RATPPLPH-PGDHHPRHRKNRGPSAGT-----------------S 128
           P  +G  P  G    R  PPL   P     +H    GP AG+                 S
Sbjct: 461 PPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPAS 520

Query: 129 QLGKKTQCRSLFLR--TKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQ 186
           Q    TQ +    R    G  A     PP  P   ++ G     ++  V   + P PP+ 
Sbjct: 521 QAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV---SGPAPPKA 577

Query: 187 EGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP 246
            G+  G  + Q P       P   PGP  P  +  + G        PR      + P   
Sbjct: 578 SGAPPGGQQRQGP-------PQKPPGPAGPTRQASQAGPV------PRTGPPTTQQPRPS 624

Query: 247 GPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAP 295
           GPG          AGRP P          P       G  P    +A+P
Sbjct: 625 GPG---------PAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASP 664



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 25/111 (22%)

Query: 200 LPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARP---PPAPGPG------- 249
           LP        +P P  PP     PG   G       RS    P   P AP PG       
Sbjct: 17  LPNGYMTDLQRPQPPPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGF 76

Query: 250 --ALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
             +LS A +   A            AAA  +   GGG   G  GR    SR
Sbjct: 77  FSSLSNAVKQTTAA-----------AAATFSEQVGGG--SGGAGRGGAASR 114


>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
            potassium channel 4 [Homo sapiens]
          Length = 1203

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 98/350 (28%), Positives = 118/350 (33%), Gaps = 73/350 (20%)

Query: 44   PAATTQQVREAADIIARWSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRA 103
            P+A T     AA  IA +   H       S       +   L  P+ P A+    ++   
Sbjct: 890  PSAPTPSAGVAATTIAGFGHFHKALGGSLSS------SDSPLLTPLQPGARSPQAAQPSP 943

Query: 104  TPPLPHPGDHHPRH-----RKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPR-- 156
             PP    G   P H       +R PS+   QLG+     SL L T  L     E PPR  
Sbjct: 944  APPGARGGLGLPEHFLPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLST--PETPPRQP 1001

Query: 157  PPPNLQEGGQRAIFQ---------RPPVYLGNKP-----TPPRQEGSFGG---RPKSQPP 199
             PP+L  G                 PP +    P      PPR  GS G     P S PP
Sbjct: 1002 EPPSLVAGASGGASPVGFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPP 1061

Query: 200  LPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRA 259
             PQ      PQ   T P      PGR    +++ +L S +    P  G   L RAS    
Sbjct: 1062 PPQ-----VPQRRGTPP----LTPGR---LTQDLKLISASQPALPQDGAQTLRRAS---- 1105

Query: 260  AGRPGPGFHGGEKAAAPRAP-GGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGD 318
                 P   G   AA P  P  GGG    G+ G   PP R     +G      V L R  
Sbjct: 1106 -----PHSSGESMAAFPLFPRAGGGSGGSGSSGGLGPPGR----PYGAIPGQHVTLPR-- 1154

Query: 319  CDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRR 368
               +  S PP  S  G R                 G   T GP   PG R
Sbjct: 1155 -KTSSGSLPPPLSLFGARAT------------SSGGPPLTAGPQREPGAR 1191



 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 73/281 (25%), Positives = 92/281 (32%), Gaps = 37/281 (13%)

Query: 172  RPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASR 231
            R P      P PP   G  G  P+   P P  + +P+  PG    P      G A G   
Sbjct: 934  RSPQAAQPSPAPPGARGGLG-LPEHFLPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLS 992

Query: 232  EPRLRSRAARPPP--APGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGA 289
             P    R   PP   A   G  S    +   G   PG   G     P AP    G +   
Sbjct: 993  TPETPPRQPEPPSLVAGASGGASPVGFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSL 1052

Query: 290  L---GRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQP------------PATSGNG 334
            L     + PP +  Q     +   T G    D     +SQP             +   +G
Sbjct: 1053 LLPPASSPPPPQVPQRRG--TPPLTPGRLTQDLKLISASQPALPQDGAQTLRRASPHSSG 1110

Query: 335  ERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAV-LRAGSGEGSRRGLQLT 393
            E         R GGG  G G   + G   PPGR +    G  V L   +  GS       
Sbjct: 1111 ESMAAFPLFPRAGGGSGGSG---SSGGLGPPGRPYGAIPGQHVTLPRKTSSGS------L 1161

Query: 394  PPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMV 434
            PPP  + GA     GG  L       T  P+R   + P+ V
Sbjct: 1162 PPPLSLFGARATSSGGPPL-------TAGPQREPGARPEPV 1195



 Score = 33.5 bits (75), Expect = 0.44
 Identities = 48/161 (29%), Positives = 60/161 (37%), Gaps = 28/161 (17%)

Query: 198 PPLPQETAAPAPQP-GPTAPPARVREPGRAEGAS--REPRLRSRAARPPPAPGP-----G 249
           PP  ++     PQ  G  A      E    EGA   ++P  RS   RP P+P P     G
Sbjct: 5   PPSMRKRLYSLPQQVGAKAWIMDEEEDAEEEGAGGRQDPSRRSIRLRPLPSPSPSAAAGG 64

Query: 250 ALSRASRSRAAGRPGPG--------------FHGGEKAAAPRAPGGGG---GRNPGALGR 292
             SR+S   AA   GP               F G   +   R  G GG   G + G L  
Sbjct: 65  TESRSSALGAADSEGPARGAGKSSTNGDCRRFRGSLASLGSRGGGSGGTGSGSSHGHLHD 124

Query: 293 AAPPSR--ARQDAWGLSGCATVGLRRGDCDRAGSSQPPATS 331
           +A   R  A  DA         GL   + +R G+S  PA S
Sbjct: 125 SAEERRLIAEGDASPGEDRTPPGL-AAEPERPGASAQPAAS 164


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 46/150 (30%), Positives = 63/150 (42%), Gaps = 19/150 (12%)

Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
           P  PPP   +G +    Q PP     KP  P  +G  G +P+  PP P +   P PQ G 
Sbjct: 199 PQGPPP---QGDKSRSSQSPP----GKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGN 249

Query: 213 -PTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGE 271
            P  PP     PG+ +G   +   +S++AR PP   P    +   +   G P P    G 
Sbjct: 250 KPQGPPP----PGKPQGPPAQGGSKSQSARSPPGK-PQGPPQQEGNNPQGPPPP---AGG 301

Query: 272 KAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
               P+AP  G  + P    +   PSR  Q
Sbjct: 302 NPQQPQAPPAGQPQGPPRPPQGGRPSRPPQ 331



 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 82/312 (26%), Positives = 109/312 (34%), Gaps = 61/312 (19%)

Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
           P  PPP   +GG +     PP     KP  P  +G     P+S P  PQ    P PQ G 
Sbjct: 57  PQGPPP---QGGNKPQGPPPP----GKPQGPPPQGDKSRSPRSPPGKPQ---GPPPQGGN 106

Query: 213 -PTAPPARVREPGRAEGASREPRLRSRAARPPPAP-GP---GALSRASRSRAAGRPGPGF 267
            P  PP     PG+ +G   +   R +   PP  P GP   G  SR+ RS      GP  
Sbjct: 107 QPQGPPP---PPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP 163

Query: 268 HGGEKAAAPRAPGG-------GGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCD 320
            GG +   P  P G        GG+ P    +  PP    Q              +GD  
Sbjct: 164 QGGNQPQGPPPPPGKPQGPPPQGGKKP----QGPPPPGKPQGP----------PPQGDKS 209

Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG-PASPPGRRHDEEVGAAVLR 379
           R+  S P    G   +           GG + +G     G P  PP +  ++  G     
Sbjct: 210 RSSQSPPGKPQGPPPQ-----------GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 258

Query: 380 AGSG---EGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVAD 436
              G   +G  +      PP +  G  Q+   G N +         P++  A      A 
Sbjct: 259 KPQGPPAQGGSKSQSARSPPGKPQGPPQQ--EGNNPQGPPPPAGGNPQQPQAP----PAG 312

Query: 437 QTSGISRPPTAG 448
           Q  G  RPP  G
Sbjct: 313 QPQGPPRPPQGG 324



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 72/317 (22%), Positives = 101/317 (31%), Gaps = 81/317 (25%)

Query: 171 QRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG--PTAPPARVREPGRAEG 228
           +  P  +   P  P  +G  G +P+  PP P +   P PQ G  P  PP     PG+ +G
Sbjct: 26  EESPSLIAGNPQGPSPQG--GNKPQGPPPPPGKPQGPPPQGGNKPQGPPP----PGKPQG 79

Query: 229 ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGG------- 281
                        PPP    G  SR+ RS      GP   GG +   P  P G       
Sbjct: 80  -------------PPPQ---GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 123

Query: 282 -GGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQ------------PP 328
            GG R  G      P     Q     S  +  G  +G   + G+              PP
Sbjct: 124 QGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 183

Query: 329 ATSG-----------------NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDE 371
              G                  G++ R  +    +  G   +G +   GP  PPG+    
Sbjct: 184 PQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQ-- 241

Query: 372 EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGP 431
                    G         Q  PPP +  G   + GG ++       + R+P       P
Sbjct: 242 ---------GPPPQGGNKPQGPPPPGKPQGPPAQ-GGSKS------QSARSPPGKPQGPP 285

Query: 432 KMVADQTSGISRPPTAG 448
           +   +   G   PP AG
Sbjct: 286 QQEGNNPQG--PPPPAG 300


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 47/152 (30%), Positives = 58/152 (38%), Gaps = 22/152 (14%)

Query: 156 RPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTA 215
           +PPP  Q+  +  + Q P    G    PP    +    P + PP         P P PT 
Sbjct: 98  QPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSA----PPATPPTSGAPPGSGPGPTPTP 153

Query: 216 PPARVREPGRAEG----ASREPRLRSRAARPPP----APGPGALSRASRSRAAGRPGPGF 267
           PPA    P  A      +S  P    +A  PPP     PGPG   +         PGPG 
Sbjct: 154 PPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQG-------PGPGG 206

Query: 268 -HGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
             GG+    P+  GG G   PG  G   PP R
Sbjct: 207 PKGGKMPGGPKPGGGPGLSTPG--GHPKPPHR 236



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 60/254 (23%), Positives = 77/254 (30%), Gaps = 30/254 (11%)

Query: 159 PNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQ--ETAAPAPQPGPTAP 216
           P   + G +     PP +   +  PP+Q       P   PP PQ  +   P P P  ++ 
Sbjct: 49  PGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSK 108

Query: 217 PARVREPGRAEGASREPRLRSRA--ARP-----PPAPGPGALSRASRSRAAGRPGPGFHG 269
           P   + PG A G    P   S A  A P     PP  GPG       +  +  PG     
Sbjct: 109 PVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPT 168

Query: 270 GEKAAAPRAPGGGGGRNPGALGRAAP-------PSRARQDAWGLSGCATVGLRRGDCDRA 322
              +  P  P   GG  P       P       P         + G    G   G     
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPG 228

Query: 323 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGS 382
           G  +PP   G             RGG       H  H    PPG       G +  +   
Sbjct: 229 GHPKPPHRGGG----------EPRGGRQHHPPYHQQHHQGPPPG----GPGGRSEEKISD 274

Query: 383 GEGSRRGLQLTPPP 396
            EG +  L L   P
Sbjct: 275 SEGFKANLSLLRRP 288


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 83/335 (24%), Positives = 113/335 (33%), Gaps = 62/335 (18%)

Query: 180 KPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAP-------PARVREPGRAEGASRE 232
           +P+P  +  S G  P +  PL  E    +PQP  T P       P     P R     + 
Sbjct: 349 RPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKS 408

Query: 233 PR---LRSRAARPPPAPGPGALSRASRSRAAG---RPGPGFHGGEKAAAPRAPGGGGGR- 285
           P      S +   PP+P P  +SR + S        P PG H  E +++P +     GR 
Sbjct: 409 PEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSH-REISSSPTSKNRSHGRA 467

Query: 286 --------NPG-ALGRAAPP------------------SRARQDAWGLSGCATVGLRRGD 318
                    P   +GR+  P                  SR+R   W  S  A    R   
Sbjct: 468 KRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRS 527

Query: 319 CDRAGSSQPPATSG--------NGERCRFCRRRRRRGGGGEGEGTHATHGPA-------S 363
             R G S+ P   G           R R  RR R         G   +  PA        
Sbjct: 528 PQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSR 587

Query: 364 PPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP----RRVHGALQRFGGGRN-LKSNWMS 418
            P RR          R+ S   +RRG   +  P     R    ++R    R+  + +  S
Sbjct: 588 TPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRS 647

Query: 419 TTRTPRRSGASGPKMVADQTSGISRPPTAGIGTSR 453
            +RTP R G S  +  A +    SR P    G SR
Sbjct: 648 RSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSR 682



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 82/317 (25%), Positives = 107/317 (33%), Gaps = 55/317 (17%)

Query: 155  PRPPPNLQEGGQ----------RAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQET 204
            PR  P  Q G            RA+ +R      +K   P  EGS       + P    T
Sbjct: 1608 PRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRT 1667

Query: 205  AAPAPQPGPTAPPARVREPGRAEGASREPRL--------RSRAARPPPAPGPGALSRASR 256
            A    +  P  P  + R P R   +   P L        RSR+A   P        R  R
Sbjct: 1668 ARRGSRSSPE-PKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRR 1726

Query: 257  SRAAGRPGPGFHGGEK-----AAAPRAPGGGG-GRNPGALGRAAPPSRARQDAWGLSGCA 310
            S +   P P            A++PR       GR+P    R    SR+R          
Sbjct: 1727 SPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRRE-----K 1781

Query: 311  TVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHD 370
            T   RR D  R+GSSQ  +      R R    RRRRGG G    + A    +    RR  
Sbjct: 1782 TRTTRRRD--RSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRR-- 1837

Query: 371  EEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASG 430
                            RRG   TPP  R   +  R       +S   ++  T RRS +  
Sbjct: 1838 ----------------RRGRSRTPPTSRKR-SRSRTSPAPWKRSRSRASPATHRRSRSRT 1880

Query: 431  P----KMVADQTSGISR 443
            P    +    +TS +SR
Sbjct: 1881 PLISRRRSRSRTSPVSR 1897



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 59/246 (23%), Positives = 83/246 (33%), Gaps = 16/246 (6%)

Query: 192 GRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGAL 251
           GR +S+ P  +  +       P    +R R P R    SR P  R R+    PA      
Sbjct: 571 GRSRSRTPARRGRSRSRT---PARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 627

Query: 252 SRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGC-A 310
               R R+  R      G  ++  P   G    R P   GR+   + AR+     S   A
Sbjct: 628 RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPA 687

Query: 311 TVGLRRGDCDRAGSSQPPATSGNG-ERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRH 369
             G  R    R G S+  +    G    R  +RR R G   E +    T        +R 
Sbjct: 688 RRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRT-------SQRR 740

Query: 370 DEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL---QRFGGGRNLKSNWMSTTRTPRRS 426
                +  ++  S   SRR   L+ P  +    L   +   G          T     RS
Sbjct: 741 SRSNSSPEMKK-SRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRS 799

Query: 427 GASGPK 432
           G+S PK
Sbjct: 800 GSSQPK 805



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 67/291 (23%), Positives = 101/291 (34%), Gaps = 33/291 (11%)

Query: 178 GNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRS 237
           G  P+P       G  P S+P              P++P    ++P        + +   
Sbjct: 293 GRSPSPASGRRGEGDAPFSEP-------GTTSTQRPSSPETATKQPSSPYEDKDKDKKEK 345

Query: 238 RAARPPPAPGPGALSRASRSRAAGRPGPGF---HGGEKAAAPRAPGGGGGRNPGA----- 289
            A RP P+P      R+S       P P     HGG        P      NP +     
Sbjct: 346 SATRPSPSP-----ERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPT 400

Query: 290 LGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQP------PATSGNGERCRFCRRR 343
             R+ P S  +      S  +    +     R  SS P      PA   + E       +
Sbjct: 401 RDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSK 460

Query: 344 RRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPR-RVHGA 402
            R  G  + + +H +H P+   GR       A   R+ S   ++RG   +  P+ R   +
Sbjct: 461 NRSHGRAKRDKSH-SHTPSRRMGRSRSPAT-AKRGRSRSRTPTKRGHSRSRSPQWRRSRS 518

Query: 403 LQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRPPTAGIGTSR 453
            QR+G  R+ +    S  R+P+R G S  +    Q  G SR    G   SR
Sbjct: 519 AQRWGRSRSPQRRGRS--RSPQRPGWSRSRNT--QRRGRSRSARRGRSHSR 565



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 18/164 (10%)

Query: 93  AKGSVPSEGRA-TPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLL 151
           ++   P  GR+ +  L   G  H R  + RG S  +S+  +K + R+   R++   +  +
Sbjct: 692 SRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSE--RKNKSRTSQRRSRSNSSPEM 749

Query: 152 ELP------------PRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPP 199
           +              PR     +   +R++    P       TPPR+  S   +PK++  
Sbjct: 750 KKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSR 809

Query: 200 LPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPP 243
            P   +  +  P    P  + + P R   +S  P  + ++  PP
Sbjct: 810 TPPRRSRSSSSP---PPKQKSKTPSRQSHSSSSPHPKVKSGTPP 850



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 44/177 (24%), Positives = 62/177 (35%), Gaps = 19/177 (10%)

Query: 91   PVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALL 150
            P  K +V  EGR  PP P P     R   +   S+ +S     +   S    +    +  
Sbjct: 2584 PAPKEAV-REGR--PPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2640

Query: 151  LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRP-------KSQPPLPQE 203
                    P+  + G +A+   P      KP P  +      +P       +S    P E
Sbjct: 2641 SSSSSSSSPSPAKPGPQAL---PKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVE 2697

Query: 204  TAAPAPQPGPTAPPARVREPGRAEGA---SREPRLRSRAARPPPAPGPGALSRASRS 257
               P+PQP P    +   E G   G    SR P  + R   P P P      R+SRS
Sbjct: 2698 RRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRP---MRHRSSRS 2751



 Score = 34.3 bits (77), Expect = 0.26
 Identities = 76/355 (21%), Positives = 117/355 (32%), Gaps = 57/355 (16%)

Query: 60   RWSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHR- 118
            R S   S   PK+        +H    +P   V  G+ P +G  T P  +     P+ R 
Sbjct: 813  RRSRSSSSPPPKQKSKTPSRQSHSS-SSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRS 871

Query: 119  ----------KNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRA 168
                      K+R PS  +       + +S               PPR  P+     Q  
Sbjct: 872  CFESSPDPELKSRTPSRHSCSGSSPPRVKS-------------STPPRQSPSRSSSPQPK 918

Query: 169  IFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVRE----PG 224
            +              PRQ    G    S P   + T+   P+   +  P    E    P 
Sbjct: 919  V---------KAIISPRQRSHSGS---SSPSPSRVTSRTTPRRSRSVSPCSNVESRLLPR 966

Query: 225  RAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGG- 283
             +   S  P  + +   PP     G++S   + +A   PGP    G K+  P+       
Sbjct: 967  YSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQTPPGPSL-SGSKSPCPQEKSKDSL 1025

Query: 284  -GRNPGALGRAA------PPSRARQDAWGLSGCATVGLRRGDCD-RAGSSQPPATSGNGE 335
                PG+L   A      PP    +  +G+S     G  +   D R+ +S P     + E
Sbjct: 1026 VQSCPGSLSLCAGVKSSTPPG---ESYFGVSSLQLKGQSQTSPDHRSDTSSPEVRQSHSE 1082

Query: 336  RCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHD--EEVGAAVLRAG-SGEGSR 387
                  + +    GG    +      AS    R D  E   + +L++G S E SR
Sbjct: 1083 SPSLQSKSQTSPKGGRSRSSSPVTELASRSPIRQDRGEFSASPMLKSGMSPEQSR 1137



 Score = 32.7 bits (73), Expect = 0.75
 Identities = 54/245 (22%), Positives = 79/245 (32%), Gaps = 25/245 (10%)

Query: 205  AAPAPQPGPTAPPARVRE-PGRAEGASREPRLRSR-AARPPPAPGPGALSRASRSRAAGR 262
            ++P P+     PP R R    + +  SR P  RSR ++ PPP       SR S S ++  
Sbjct: 782  SSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPH 841

Query: 263  PGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRA 322
            P        K  +   P  G   +P A  ++  P   R+  +  S    +  R       
Sbjct: 842  P--------KVKSGTPPRQGSITSPQANEQSVTPQ--RRSCFESSPDPELKSRTPSRHSC 891

Query: 323  GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGS 382
              S PP    +           R+                SP  R H      +  R  S
Sbjct: 892  SGSSPPRVKSS--------TPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTS 943

Query: 383  GEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASG-----PKMVADQ 437
                RR   ++P        L R+    +   +      TP R   SG     PK+ A  
Sbjct: 944  RTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQT 1003

Query: 438  TSGIS 442
              G S
Sbjct: 1004 PPGPS 1008


>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
           preproprotein [Homo sapiens]
          Length = 198

 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 47/153 (30%), Positives = 64/153 (41%), Gaps = 19/153 (12%)

Query: 155 PRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG-P 213
           P PPP   +G        PP   GNKP  P   G    +P+  PP   ++ +P   PG P
Sbjct: 50  PPPPPGKPQG--------PPPQGGNKPQGPPPPG----KPQGPPPQGDKSRSPRSPPGKP 97

Query: 214 TAPPARVREP-GRAEGASREPRLRSRAARP--PPAPGPGALSRASRSRAAGRPGPGFHGG 270
             PP +  +P G       +P+      +P  PPA G G+ S+++RS      GP    G
Sbjct: 98  QGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQG-GSKSQSARSPPGKPQGPPQQEG 156

Query: 271 EKAAAPRAPGGGGGRNPGA--LGRAAPPSRARQ 301
                P  P GG  + P A   G+   P R  Q
Sbjct: 157 NNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQ 189



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 25/145 (17%)

Query: 171 QRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG--PTAPPARVREPGRAEG 228
           +  P  +   P  P  +G  G +P+  PP P +   P PQ G  P  PP     PG+ +G
Sbjct: 26  EESPSLIAGNPQGPSPQG--GNKPQGPPPPPGKPQGPPPQGGNKPQGPP----PPGKPQG 79

Query: 229 ------ASREPRLRSRAARPPP-------APGPGALSRASRSRAAGRP-GPGFHGGEKAA 274
                  SR PR      + PP        P P   ++       G+P GP   GG K+ 
Sbjct: 80  PPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQ 139

Query: 275 APRAPGG---GGGRNPGALGRAAPP 296
           + R+P G   G  +  G   +  PP
Sbjct: 140 SARSPPGKPQGPPQQEGNNPQGPPP 164


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 75/269 (27%), Positives = 91/269 (33%), Gaps = 62/269 (23%)

Query: 155 PRPPPNLQEGGQRAIFQRP--PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAP--- 209
           P  PP  +  GQ      P  P+ L  +P PP + G  G  P   P  P +     P   
Sbjct: 51  PVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRG--PPGPPGFPGKPGMGKPGLH 108

Query: 210 -QPGPTAPPA--------------RVREPGRAEGASREPRLRSRAAR-----PPPAPGPG 249
            QPGP  PP               +V  PG+  G   EP +R          PP  PGP 
Sbjct: 109 GQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQP-GLRGEPGIRGDQGLRGPPGPPGLPGPS 167

Query: 250 ALSRASRSRAAGRPG-PGFHG-----GE----------------KAAAPRAPGGGGGRNP 287
            ++   +  A G PG PGF G     GE                +   P APG GG   P
Sbjct: 168 GITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGA--P 225

Query: 288 GALGRAAPPSRARQDAWGL---------SGCATVGLRRGDCDRAGSSQPPATSGNGERCR 338
           G  G   P    +    GL         SG   V   RG+    G   PP   G G    
Sbjct: 226 GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA 285

Query: 339 FCRRRRRRGGGGEGE-GTHATHGPASPPG 366
                 +   G +GE GT    G   P G
Sbjct: 286 AGLPGPQGPSGAKGEPGTRGPPGLIGPTG 314



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 76/278 (27%), Positives = 88/278 (31%), Gaps = 57/278 (20%)

Query: 130 LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGS 189
           LG  T   SL L    L  L+L   PR       GG          Y   K   P Q+G 
Sbjct: 2   LGTLTPLSSLLLL---LLVLVLGCGPRASSGGGAGGAAG-------YAPVKYIQPMQKGP 51

Query: 190 FGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPG 249
            G      PP  +        P P  P     EPG                 PP  PGP 
Sbjct: 52  VG------PPFREGKGQYLEMPLPLLPMDLKGEPG-----------------PPGKPGPR 88

Query: 250 ALSRASRSRAAGRPG---PGFHGGEKAAAPRAPGG---GGGRNPGALGRAAPPSRARQDA 303
                      G+PG   PG HG    A P  PG    G    PG  G+  PP +     
Sbjct: 89  G--PPGPPGFPGKPGMGKPGLHGQPGPAGP--PGFSRMGKAGPPGLPGKVGPPGQP---- 140

Query: 304 WGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGG----EGE-GTHAT 358
            GL G   +   RGD    G   PP   G         +   +G  G    +GE G    
Sbjct: 141 -GLRGEPGI---RGDQGLRGPPGPPGLPGPSG-ITIPGKPGAQGVPGPPGFQGEPGPQGE 195

Query: 359 HGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 396
            GP    G + D  VG   L    G+G   G    P P
Sbjct: 196 PGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGP 233



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 58/217 (26%), Positives = 72/217 (33%), Gaps = 28/217 (12%)

Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARP 242
           PP   GS G   +  PP P+  A P   PG       +R      G + +P +      P
Sbjct: 359 PPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPG----IRGDQGPSGLAGKPGVPGERGLP 414

Query: 243 PPAPGPGALSRASRSRAAGRP-GPGFHG--GEKA--AAPRAPG-GGGGRNPGALGRAAPP 296
                PG           GRP GPG  G  G+K     P  PG  G    PG  G A P 
Sbjct: 415 GAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPI 474

Query: 297 S----RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG 352
                   +   GL G    G R G+   AG + PP   G+              G    
Sbjct: 475 GPQGLPGLKGEPGLPGPPGEG-RAGEPGTAGPTGPPGVPGS-------------PGITGP 520

Query: 353 EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRG 389
            G     GP   PG   +  +    L  G  EG+  G
Sbjct: 521 PGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLG 557


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 78/282 (27%), Positives = 100/282 (35%), Gaps = 39/282 (13%)

Query: 157 PPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFG--GRPKSQPPLPQETAAPAPQ---- 210
           PP + Q+   +A+ Q+  + +   P P    G  G  G P   P L  E  A  PQ    
Sbjct: 457 PPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLP-GHPGLKGEEGAEGPQGPRG 515

Query: 211 -PGPTAPPARVREPGR--AEGASREPRLRSRAARP--PPAPG-PGALSRASRSRAAGRPG 264
             GP  PP RV + GR  A+GA   P              PG PG   +       G+PG
Sbjct: 516 LQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPG 575

Query: 265 PGFHGGEKAA-APRAPGGGGGRNPGALG----RAAPPSRARQDAWGLSGCATVGLRRGDC 319
           P    GE+ A  P  P G  G  PG  G    R +P    R    G+ G       +G+ 
Sbjct: 576 PPGEDGERGAEGPPGPTGQAG-EPGPRGLLGPRGSPGPTGRPGVTGIDGAPGA---KGNV 631

Query: 320 DRAGSSQPPATSGN-------GERCRFCRRRRRRGGGGEG-EGTHATHGPASPPGRRHDE 371
              G   PP   GN       G +        +   G  G  G   + GP   PG  H+ 
Sbjct: 632 GPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPG--HEG 689

Query: 372 EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLK 413
             G    +   G     G    P PR V G      G R L+
Sbjct: 690 PTGEKGAQGPPGSAGPPGY---PGPRGVKGT----SGNRGLQ 724



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 101/405 (24%), Positives = 130/405 (32%), Gaps = 58/405 (14%)

Query: 70   PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
            P   GD+G+  A G       P  +G     G   PP     D  P H   RG      Q
Sbjct: 850  PGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQ 909

Query: 130  LGKKTQCRSLFLRTK-GLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEG 188
             G       L  + K G    L E  P  PP             PP   G     P  EG
Sbjct: 910  TGPPGPAGVLGPQGKTGEVGPLGERGPPGPPG------------PPGEQG----LPGLEG 953

Query: 189  SFGGRPKSQPPLPQETAAPA------------PQPGPTAPPARVREPGRAEGASREPRLR 236
              G + +  PP P     PA              PGPT        PG   GA+  P   
Sbjct: 954  REGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPV-GANGSP--- 1009

Query: 237  SRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN--PGALGRAA 294
                R P  P  G +    +S + G  GP   G + +   R P G  G++  PG LG   
Sbjct: 1010 --GERGPLGPA-GGIGLPGQSGSEGPVGPA--GKKGSRGERGPPGPTGKDGIPGPLGPLG 1064

Query: 295  PPSRARQDA-WGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGE 353
            PP  A      G  G       +G     G + PP   G        R      G    +
Sbjct: 1065 PPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPG-------IRGPAGHPGPPGAD 1117

Query: 354  GTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLK 413
            G     GP    G++ D+ V     R   G     GLQ  P P    G +   G   ++ 
Sbjct: 1118 GAQGRRGPPGLFGQKGDDGV-----RGFVGVIGPPGLQGLPGPPGEKGEVGDVG---SMG 1169

Query: 414  SNWMSTTRTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGD 458
             +     R P+  G +G +       G+ +P   G    R   GD
Sbjct: 1170 PHGAPGPRGPQ--GPTGSEGTPGLPGGVGQPGAVGEKGERGDAGD 1212



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 89/357 (24%), Positives = 113/357 (31%), Gaps = 70/357 (19%)

Query: 73   SGDMGKYHAHGHLRAPVFPVAKGSVPSEG-RATPPLPHP-GDHHPRHRKNRGPSAGTSQL 130
            SG+ G     G      FP  KG V  +G +  P  P P G+  P      GP     Q 
Sbjct: 718  SGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPE-----GPKGQAGQA 772

Query: 131  GKKTQCRSLFLRTKGLCALLLELPPRPPPN-----------LQEGGQRAIFQRPPVYLGN 179
            G++    S   + K     L   P RP P            + E G+     +P   L  
Sbjct: 773  GEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPG--LEG 830

Query: 180  KPTPPRQEGSFG-----GRPKSQ--------PPLPQETAAPAPQ-----PGPTAPPARVR 221
            +  PP   G  G     G+P  +        P +P E   P  Q     PGP  PP    
Sbjct: 831  ERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQG 890

Query: 222  EPGRAEGASREPRLRSRAARPPPAP----GP-------GALSRASRSRAAGRPG----PG 266
            + GR     +   L  +    PP P    GP       G L         G PG    PG
Sbjct: 891  KDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPG 950

Query: 267  FHGGEKAAAPRAPGGGGGRN--------PGALGRAAPPS----RARQDAWGLSGCATVGL 314
              G E A     P G  G+         PG  G    P     +  +   G  G      
Sbjct: 951  LEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPG 1010

Query: 315  RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPG 366
             RG    AG    P  SG+        ++  RG  G       +G     GP  PPG
Sbjct: 1011 ERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPG 1067



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 51/196 (26%), Positives = 65/196 (33%), Gaps = 27/196 (13%)

Query: 184  PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARV--REPGRAEGASREPRLRS--RA 239
            P  +GS G +  + PP       PA  PGP         R P    G   +  +R     
Sbjct: 1084 PGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGV 1143

Query: 240  ARPPPAPG-PGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGG--------GGGRNPGAL 290
              PP   G PG           G  GP  HG      P+ P G        GG   PGA+
Sbjct: 1144 IGPPGLQGLPGPPGEKGEVGDVGSMGP--HGAPGPRGPQGPTGSEGTPGLPGGVGQPGAV 1201

Query: 291  GRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGG 350
            G       A     G  G   +   +GD    G S P   +G            ++G  G
Sbjct: 1202 GEKGERGDAGDP--GPPGAPGIPGPKGDIGEKGDSGPSGAAG---------PPGKKGPPG 1250

Query: 351  EGEGTHATHGPASPPG 366
            E +G   + GP   PG
Sbjct: 1251 E-DGAKGSVGPTGLPG 1265



 Score = 37.0 bits (84), Expect = 0.040
 Identities = 59/243 (24%), Positives = 78/243 (32%), Gaps = 59/243 (24%)

Query: 165 GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPA-----R 219
           G+ A+ ++   + G    PP   G  G    S PP P         PGP   P       
Sbjct: 379 GEPAVIEKGQQFEG----PPGAPGPQGVVGPSGPPGPPGFPGDPGPPGPAGLPGIPGIDG 434

Query: 220 VREPGR---------AEGASREPRLRSRAARPPPA---------PGPGALSRASRSRAAG 261
           +R P           A G+ + P +  + A+               PG +    R    G
Sbjct: 435 IRGPPGTVIMMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVG 494

Query: 262 RPG-PGFHGGEKAAAPRAPGGGGGRN--PGALGRAAPPS-------------RARQDAWG 305
            PG PG  G E A  P+ P G  G +  PG +G+   P              +  +   G
Sbjct: 495 LPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDG 554

Query: 306 LSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPP 365
           L G      +RGD    G   PP   G             RG     EG     G A  P
Sbjct: 555 LPGLPGEKGQRGDFGHVGQPGPPGEDG------------ERG----AEGPPGPTGQAGEP 598

Query: 366 GRR 368
           G R
Sbjct: 599 GPR 601



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 44/159 (27%), Positives = 52/159 (32%), Gaps = 24/159 (15%)

Query: 180  KPTPPRQEGSFG-----GRPKSQ-PPLPQETAAPAPQPGPTAPPARVREPGRAEGASREP 233
            K  PP ++G+ G     G P    PP     +     PG    P  V  PG   GAS EP
Sbjct: 1245 KKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPG-PPGASGEP 1303

Query: 234  RLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRA 293
                   +  P+   G   R     A G PGP               G  GR  G +G  
Sbjct: 1304 GAPGPPGKRGPSGHMGREGREGEKGAKGEPGPD--------------GPPGRT-GPMGAR 1348

Query: 294  APPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG 332
             PP R   +  GL G        G     G   PP   G
Sbjct: 1349 GPPGRVGPE--GLRGIPGPVGEPGLLGAPGQMGPPGPLG 1385



 Score = 34.3 bits (77), Expect = 0.26
 Identities = 49/182 (26%), Positives = 64/182 (35%), Gaps = 37/182 (20%)

Query: 70   PKRSGDMGKYHAHGH-----LRAPVFPVAK-GSVPSEGRATPPLPHPGDHHPRHRKNRGP 123
            P R+G MG     G      LR    PV + G + + G+  PP P      P  + + GP
Sbjct: 1339 PGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGP 1398

Query: 124  SAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAI--FQRPPVYLGNKP 181
                  +G              L  L+      PP    E G + +   Q PP   G+ P
Sbjct: 1399 KGEKGHIG--------------LIGLI-----GPPGEAGEKGDQGLPGVQGPPGPKGD-P 1438

Query: 182  TPPRQEGSFG--GRPKSQPPLPQETAAPAP-------QPGPTAPPARVREPGRAEGASRE 232
             PP   GS G  G P    PL Q+ +  +P         GP  PP     P    G  R 
Sbjct: 1439 GPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGAPAELHGLRRR 1498

Query: 233  PR 234
             R
Sbjct: 1499 RR 1500


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,847,847
Number of Sequences: 37866
Number of extensions: 1994839
Number of successful extensions: 27871
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 2246
Number of HSP's that attempted gapping in prelim test: 13925
Number of HSP's gapped (non-prelim): 9923
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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