Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239754674
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
(480 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 996 0.0
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 822 0.0
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 822 0.0
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 822 0.0
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 67 4e-11
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 67 5e-11
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 67 5e-11
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 67 5e-11
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 63 7e-10
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 63 7e-10
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 63 7e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 61 2e-09
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 61 3e-09
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 60 3e-09
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 60 4e-09
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 59 7e-09
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 59 1e-08
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 58 2e-08
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 57 3e-08
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 57 3e-08
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 57 3e-08
gi|19924099 synapsin I isoform Ia [Homo sapiens] 57 4e-08
gi|19924097 synapsin I isoform Ib [Homo sapiens] 57 4e-08
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 57 5e-08
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 57 5e-08
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 56 6e-08
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 56 6e-08
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 56 8e-08
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 55 2e-07
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 55 2e-07
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 996 bits (2574), Expect = 0.0
Identities = 480/480 (100%), Positives = 480/480 (100%)
Query: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
Query: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
Query: 241 RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR 300
RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR
Sbjct: 241 RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR 300
Query: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG
Sbjct: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
Query: 361 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT
Sbjct: 361 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
Query: 421 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 480
RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 421 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 480
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 822 bits (2124), Expect = 0.0
Identities = 415/480 (86%), Positives = 420/480 (87%), Gaps = 20/480 (4%)
Query: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
Query: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR EG PR R+ +
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREG----PRGRAESR 236
Query: 241 RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR 300
PA P L + + P P G RAPG GR P R P A
Sbjct: 237 GSGPAQ-PAHLPLPGPAHSPAPPAPELREG------RAPGSTAGRRP----RPREPQAAE 285
Query: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
+ SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG
Sbjct: 286 E-----SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 340
Query: 361 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT
Sbjct: 341 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 400
Query: 421 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 480
RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 401 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 822 bits (2124), Expect = 0.0
Identities = 415/480 (86%), Positives = 420/480 (87%), Gaps = 20/480 (4%)
Query: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
Query: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR EG PR R+ +
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREG----PRGRAESR 236
Query: 241 RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR 300
PA P L + + P P G RAPG GR P R P A
Sbjct: 237 GSGPAQ-PAHLPLPGPAHSPAPPAPELREG------RAPGSTAGRRP----RPREPQAAE 285
Query: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
+ SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG
Sbjct: 286 E-----SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 340
Query: 361 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT
Sbjct: 341 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 400
Query: 421 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 480
RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 401 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 822 bits (2124), Expect = 0.0
Identities = 415/480 (86%), Positives = 420/480 (87%), Gaps = 20/480 (4%)
Query: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
Query: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR EG PR R+ +
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREG----PRGRAESR 236
Query: 241 RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR 300
PA P L + + P P G RAPG GR P R P A
Sbjct: 237 GSGPAQ-PAHLPLPGPAHSPAPPAPELREG------RAPGSTAGRRP----RPREPQAAE 285
Query: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
+ SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG
Sbjct: 286 E-----SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 340
Query: 361 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT
Sbjct: 341 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 400
Query: 421 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 480
RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 401 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 67.0 bits (162), Expect = 4e-11
Identities = 98/359 (27%), Positives = 119/359 (33%), Gaps = 60/359 (16%)
Query: 91 PVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALL 150
P KGS +G PP P G P + GPS + G + Q +GL
Sbjct: 1164 PGQKGSKGDKGEQGPPGP-TGPQGPIGQP--GPSGADGEPGPRGQ--------QGLFGQK 1212
Query: 151 LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ 210
+ PR P PV L P PP ++G G + PP P P+
Sbjct: 1213 GDEGPRGFPG----------PPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGA 1262
Query: 211 P---GPTAPPARVREPGRA-----EGASREPRLRSRAARPPPAPGPGALSRASRSRAAGR 262
P GP PP + PG G + EP L P P G + S AAG
Sbjct: 1263 PGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGP 1322
Query: 263 PGP-GFHGGEKAAAPRAPGG-----GGGRNPGALGRAAPPSRARQDAW-GLSGCATVGLR 315
PGP G G + P G G PG G+ PP D G +G
Sbjct: 1323 PGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSP----- 1377
Query: 316 RGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG--EGTHATHGPASPPGRRHDEEV 373
G G S PP G R+ +G GE EG GP P G +
Sbjct: 1378 -GPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGA--PGKP 1434
Query: 374 GAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPK 432
G LR G +GL +P P G M P G SGPK
Sbjct: 1435 GPDGLRGIPGPVGEQGLPGSPGPDGPPGP--------------MGPPGLPGLKGDSGPK 1479
Score = 61.6 bits (148), Expect = 2e-09
Identities = 97/349 (27%), Positives = 115/349 (32%), Gaps = 79/349 (22%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHP-GDHHPRH-RKNRGPSAGT 127
P G G+ G + P FP A G GR TP P P G P R RGP T
Sbjct: 870 PGLPGYPGRQGPKGSIGFPGFPGANGE--KGGRGTPGKPGPRGQRGPTGPRGERGPRGIT 927
Query: 128 SQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTP---- 183
+ G K + P PP G Q P + G K P
Sbjct: 928 GKPGPKGNSGG-------------DGPAGPPGERGPNGP----QGPTGFPGPKGPPGPPG 970
Query: 184 -------PRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREPG 224
P Q G G + K+ PP P P PGP PP PG
Sbjct: 971 KDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPG 1030
Query: 225 RA--EGASREPRLRSRAARPPP-----------APGP-GALSRASRSRAAGRPGPGFHGG 270
A EG +P + P PGP GAL G PGP G
Sbjct: 1031 LAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPG 1090
Query: 271 EKAAAPRA-----PGGGGGRNP-------GALGRAAPPSRARQDAWGLSGCATVGLRRGD 318
E+ A A PG G + P GA G P A +D GL G VGL
Sbjct: 1091 ERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD--GLQG--PVGLP--- 1143
Query: 319 CDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGR 367
AG PP G+ ++ +G GE +G GP P G+
Sbjct: 1144 -GPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGE-QGPPGPTGPQGPIGQ 1190
Score = 55.8 bits (133), Expect = 8e-08
Identities = 63/207 (30%), Positives = 78/207 (37%), Gaps = 29/207 (14%)
Query: 174 PVYLGNKPTPPRQEGSFG--GRP--KSQPPLPQETAAPAP--QPGPTAPPARVREPGRA- 226
PV P PP + G G G P K P +T +P P +PGP+ PP + PG A
Sbjct: 1340 PVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAG 1399
Query: 227 -EGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP-GFHG-----GEKAAAPRAP 279
EG E + A P PG A G+PGP G G GE+ P +P
Sbjct: 1400 PEGRQGEKGAKGEAGLEGP---PGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQ-GLPGSP 1455
Query: 280 GGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRF 339
G G PG +G P GL G + +G G PP G
Sbjct: 1456 GPDG--PPGPMGPPGLP--------GLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGL 1505
Query: 340 CRRRRRRGGGGEGEGTHATHGPASPPG 366
+ G GE +G GP PPG
Sbjct: 1506 PGPQGSSGPKGE-QGITGPSGPIGPPG 1531
Score = 47.0 bits (110), Expect = 4e-05
Identities = 88/331 (26%), Positives = 110/331 (33%), Gaps = 74/331 (22%)
Query: 91 PVAKGSVPSEGRATPPLPHPGDHHPRHRKNR-GPSAGTSQLGKKTQCRSLFLRTKGLCAL 149
P KG G + PP P PGD R GP + G + L KG
Sbjct: 639 PGEKGHRGDPGPSGPPGP-PGDDGERGDDGEVGPRGLPGEPGPRG-----LLGPKGPPG- 691
Query: 150 LLELPPRPPPNLQEGGQRAIFQRPPVYLG--NKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
PP PP GQ P +G +P PP Q+G+ G + P PQ P
Sbjct: 692 ----PPGPPGVTGMDGQPG----PKGNVGPQGEPGPPGQQGNPGAQGL---PGPQGAIGP 740
Query: 208 APQPGPTAPPARVREPGRAEGASREPRLRS----RAARPPPAP-------GPGALSRASR 256
+ GP P PG A+G P + + PP P GP + A
Sbjct: 741 PGEKGPLGKPGLPGMPG-ADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADG 799
Query: 257 SRAA-------GRPG-PGFHG-----GEKAA----------APRAPGGGGGRN--PGALG 291
R G G PGF G G++ P P G GG N PG LG
Sbjct: 800 IRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLG 859
Query: 292 RAAPPSRARQDAWGLSG----------CATVGLRRGDCDRAGSSQPPATSGNGERCRFCR 341
P + + GL G G + ++ G P G+R
Sbjct: 860 --PPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGP 917
Query: 342 RRRRRGGGGEGE----GTHATHGPASPPGRR 368
R R G G+ G GPA PPG R
Sbjct: 918 RGERGPRGITGKPGPKGNSGGDGPAGPPGER 948
Score = 45.4 bits (106), Expect = 1e-04
Identities = 70/267 (26%), Positives = 89/267 (33%), Gaps = 27/267 (10%)
Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
P + QE +AI Q+ P+ L +P P GS G + + PQ
Sbjct: 537 PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGV 596
Query: 208 APQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265
PGP P R G A G + + A PG +G PGP
Sbjct: 597 QGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGP 656
Query: 266 ----GFHGGEKAAAPRA-PGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCD 320
G G + PR PG G R G LG PP G++G +G+
Sbjct: 657 PGDDGERGDDGEVGPRGLPGEPGPR--GLLGPKGPPGPPGPP--GVTGMDGQPGPKGNVG 712
Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPGRRHDEEVGA 375
G PP GN + G GE G G PPG H + G
Sbjct: 713 PQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPG--HPGKEGP 770
Query: 376 AVLRAGSGEGSRRGLQLTPPPRRVHGA 402
+ G G +G P PR V GA
Sbjct: 771 PGEKGGQGPPGPQGPIGYPGPRGVKGA 797
Score = 41.6 bits (96), Expect = 0.002
Identities = 65/231 (28%), Positives = 78/231 (33%), Gaps = 42/231 (18%)
Query: 198 PPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGAL----SR 253
PP P+ A PG P +V +PG G P L P P PG + R
Sbjct: 470 PPGPEGPAGLPGPPGTMGPTGQVGDPGE-RGPPGRPGLPGADGLPGP---PGTMLMLPFR 525
Query: 254 ASRSRAAGRPGPGFHGGEKAA------------APRAPGGGGGRNPGALG-------RAA 294
AG GP E A P P G GR PG +G +
Sbjct: 526 FGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGR-PGPVGPPGSGGLKGE 584
Query: 295 PPSRARQDAWGLSGCATVGLRRGDCDRAGS----SQPPATSGNGERCRFCRRRRRRGGGG 350
P Q G+ G + G RAGS P T G+R G G
Sbjct: 585 PGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDR----GFDGLAGLPG 640
Query: 351 EGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG 401
E +G GP+ PPG D+ R GE RGL P PR + G
Sbjct: 641 E-KGHRGDPGPSGPPGPPGDDGE-----RGDDGEVGPRGLPGEPGPRGLLG 685
Score = 37.4 bits (85), Expect = 0.030
Identities = 32/119 (26%), Positives = 42/119 (35%), Gaps = 37/119 (31%)
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARP 242
PP ++G G R P PQ ++ P + G T P + PG P
Sbjct: 1493 PPGEQGEKGDRGL---PGPQGSSGPKGEQGITGPSGPIGPPG-----------------P 1532
Query: 243 PPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
P PGP PG G + ++ P P G G +PG G PP Q
Sbjct: 1533 PGLPGP----------------PGPKGAKGSSGPTGPKGEAG-HPGPPGPPGPPGEVIQ 1574
Score = 29.3 bits (64), Expect = 8.3
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 174 PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREP 223
P+ P P G G + S P P+ A PGP PP V +P
Sbjct: 1526 PIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQP 1575
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 66.6 bits (161), Expect = 5e-11
Identities = 94/359 (26%), Positives = 117/359 (32%), Gaps = 59/359 (16%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
P G G+ G P FP A G + G A P P R +RG T +
Sbjct: 852 PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 911
Query: 130 LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP-------PVYLGNKPT 182
G K + PP PP G + P P P
Sbjct: 912 PGPKGTSGG-------------DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 958
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREPGRA--EG 228
P Q G G + K+ PP P P PGP PP PG A EG
Sbjct: 959 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1018
Query: 229 ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN-- 286
A +P + + + PA G A G PG GGE P P G G
Sbjct: 1019 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQG--APGLKGGEGPQGPPGPVGSPGERGS 1076
Query: 287 ---------PGALGRAAPPSRA-RQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG---- 332
PG G PP A + A G G R G G P +G
Sbjct: 1077 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1136
Query: 333 NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
+G++ ++ G +GE +GP PPG + VGA + G GE RG Q
Sbjct: 1137 DGDKGEIGEPGQKGSKGDKGE-----NGPPGPPGLQ--GPVGAPGIAGGDGEPGPRGQQ 1188
Score = 56.2 bits (134), Expect = 6e-08
Identities = 76/280 (27%), Positives = 96/280 (34%), Gaps = 31/280 (11%)
Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
P + QE +AI Q+ P+ L +P P GS G + +S P PQ
Sbjct: 519 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 578
Query: 208 APQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265
PGPT P + PG G EP + PG G PGP
Sbjct: 579 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 638
Query: 266 ----GFHGGEKAAAPRA-PGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCD 320
G G + PR PG G R G LG P Q G++G +G+
Sbjct: 639 PGDDGMRGEDGEIGPRGLPGEAGPR--GLLGPRGTPGAPGQP--GMAGVDGPPGPKGNMG 694
Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPGRRHDEEVGA 375
G PP GN + G GE G G PPG H + G
Sbjct: 695 PQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG--HPGKEGQ 752
Query: 376 AVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSN 415
+ + G +G P PR V GA G R LK +
Sbjct: 753 SGEKGALGPPGPQGPIGYPGPRGVKGA----DGVRGLKGS 788
Score = 52.8 bits (125), Expect = 7e-07
Identities = 65/234 (27%), Positives = 82/234 (35%), Gaps = 25/234 (10%)
Query: 174 PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEG 228
P+ L P PP ++G G G P PP P+ P GP PP V G G
Sbjct: 1208 PIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGADGPQGPPGSVGSVG-GVG 1264
Query: 229 ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGR-NP 287
EP P A G AG PG G K PG G + NP
Sbjct: 1265 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG----PPGDDGPKGNP 1320
Query: 288 GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRRR 346
G +G P + G +G VG +G+ G PP SG G +R
Sbjct: 1321 GPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1378
Query: 347 GGGGEG----EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 396
G EG +G G PPG+ G + +G+ GL+ P P
Sbjct: 1379 AAGAEGRQGEKGAKGEAGAEGPPGK-----TGPVGPQGPAGKPGPEGLRGIPGP 1427
Score = 52.8 bits (125), Expect = 7e-07
Identities = 59/204 (28%), Positives = 71/204 (34%), Gaps = 23/204 (11%)
Query: 174 PVYLGNKPTPPRQEGSFG----GRPKSQPPLPQETAAPAP--QPGPTAPPARVREPGR-- 225
PV P PP + G G G K + P + P P + GP PP + PG
Sbjct: 1322 PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAG 1381
Query: 226 AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP-GFHGGEKAAAPRAPGGGGG 284
AEG E + A P PG AG+PGP G G PG G
Sbjct: 1382 AEGRQGEKGAKGEAGAEGP---PGKTGPVGPQGPAGKPGPEGLRG--------IPGPVGE 1430
Query: 285 RN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRR 342
+ PGA G+ PP GL G +G G PP G
Sbjct: 1431 QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGT 1490
Query: 343 RRRRGGGGEGEGTHATHGPASPPG 366
+ G G+G G GP PPG
Sbjct: 1491 QGSPGAKGDG-GIPGPAGPLGPPG 1513
Score = 48.1 bits (113), Expect = 2e-05
Identities = 77/281 (27%), Positives = 96/281 (34%), Gaps = 68/281 (24%)
Query: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAP---------PARVREPGRA-----------E 227
G G R + P P+ A P PGP+ P PGR
Sbjct: 814 GQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFP 873
Query: 228 GASREPRLRSRAARPPPAPGPGAL----SRASRSRAAGRPGP-GFHGGEKAAAPRAPGGG 282
GA+ E R A +P P G SR +R G+PGP G GG+ P PG
Sbjct: 874 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARG-PTGKPGPKGTSGGD--GPPGPPGER 930
Query: 283 GGRNP----GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG------ 332
G + P G G PP +D GL G +RG+ G + PP G
Sbjct: 931 GPQGPQGPVGFPGPKGPPGPPGKD--GLPGHPG---QRGETGFQGKTGPPGPGGVVGPQG 985
Query: 333 -NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
GE G GE H GP PPG + GAA G+ +G+
Sbjct: 986 PTGET------------GPIGERGHP--GPPGPPGEQ--GLPGAAGKEGAKGDPGPQGIS 1029
Query: 392 LTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPK 432
P + G F G R L P G GP+
Sbjct: 1030 GKDGPAGLRG----FPGERGLP----GAQGAPGLKGGEGPQ 1062
Score = 43.1 bits (100), Expect = 6e-04
Identities = 67/249 (26%), Positives = 83/249 (33%), Gaps = 61/249 (24%)
Query: 153 LPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFG--GRPKSQPPLPQE-TAAPAP 209
LP RP P Q PP G K P ++G G GR Q P+ A PA
Sbjct: 1085 LPGRPGP-----------QGPPGPAGEKGAPG-EKGPQGPAGRDGVQGPVGLPGPAGPAG 1132
Query: 210 QPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHG 269
PG + EPG+ S+ + + PP GP PG G
Sbjct: 1133 SPGEDGDKGEIGEPGQK--GSKGDKGENGPPGPPGLQGPVG-------------APGIAG 1177
Query: 270 GEKAAAPRAPGGGGGR--NPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQP 327
G+ PR G G+ + GA G PP GL G +G+ G P
Sbjct: 1178 GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI-----GLQGLPGPPGEKGENGDVGPMGP 1232
Query: 328 PATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSR 387
P G RG +G + GP PPG VG+ G GE
Sbjct: 1233 PGPPG------------PRG----PQGPNGADGPQGPPG-----SVGSV---GGVGEKGE 1268
Query: 388 RGLQLTPPP 396
G P P
Sbjct: 1269 PGEAGNPGP 1277
Score = 42.0 bits (97), Expect = 0.001
Identities = 104/437 (23%), Positives = 132/437 (30%), Gaps = 116/437 (26%)
Query: 74 GDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNR-GPSAGTSQLGK 132
G+ G G P P KG G PP P PGD R GP + G
Sbjct: 604 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP-PGDDGMRGEDGEIGPRGLPGEAGP 662
Query: 133 KTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGN-----KPTPPRQE 187
+ GL L PR P A PP GN +P PP Q+
Sbjct: 663 R-----------GL------LGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQ 705
Query: 188 GSFG--GRPKSQPPL-------PQETAAPAPQPGPTAPPARVREPGRA--EGASREPRLR 236
G+ G G P Q P+ PQ A PG PP + G++ +GA P +
Sbjct: 706 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 765
Query: 237 SRAARPPPA-----------------------PG----------------------PGAL 251
P P PG G
Sbjct: 766 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPE 825
Query: 252 SRASRSRAAGRPGPGFHGGEKA--AAPRAPGGGGGRNP-GALGRAAPPSRARQDAWGLSG 308
R+ G PGP GEK P PG G + P G+ G P A G G
Sbjct: 826 GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG-----ANGEKG 880
Query: 309 CATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRR 368
V + G + G + P R R R G +GT GP PPG R
Sbjct: 881 ARGVAGKPGPRGQRGPTGP----------RGSRGARGPTGKPGPKGTSGGDGPPGPPGER 930
Query: 369 HDE----EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPR 424
+ VG + G + GL P G+ ++ + T P
Sbjct: 931 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHP--------------GQRGETGFQGKTGPPG 976
Query: 425 RSGASGPKMVADQTSGI 441
G GP+ +T I
Sbjct: 977 PGGVVGPQGPTGETGPI 993
Score = 41.2 bits (95), Expect = 0.002
Identities = 67/258 (25%), Positives = 83/258 (32%), Gaps = 65/258 (25%)
Query: 165 GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPG 224
G+ A+ + P + + P P G G PP Q P PG PP R PG
Sbjct: 441 GEPAVVE-PGMLVEGPPGPAGPAGIMG------PPGLQGPTGPPGDPGDRGPPGRPGLPG 493
Query: 225 RAEGASREP--------RLRSRAARPPPAPGPGALSRASRSRA-------------AGRP 263
A+G P R ++ P A ++A +A GRP
Sbjct: 494 -ADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP 552
Query: 264 GP-------GFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRR 316
GP G G P+ P G G PG G+ P R R A G G +
Sbjct: 553 GPVGGPGSSGAKGESGDPGPQGPRGVQG-PPGPTGK--PGKRGRPGADGGRGMPGEPGAK 609
Query: 317 GDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG----RRHDEE 372
GD G P G+ G GP PPG R D E
Sbjct: 610 GDRGFDGLPGLPGDKGH-------------------RGERGPQGPPGPPGDDGMRGEDGE 650
Query: 373 VGAAVLRAGSGEGSRRGL 390
+G R GE RGL
Sbjct: 651 IGP---RGLPGEAGPRGL 665
Score = 30.8 bits (68), Expect = 2.8
Identities = 53/223 (23%), Positives = 65/223 (29%), Gaps = 28/223 (12%)
Query: 94 KGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLEL 153
KG G+ PP P P RGP G++ + + KG
Sbjct: 1347 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-----KGEAGA---- 1397
Query: 154 PPRPPPNLQEGGQRAIFQRP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
PP G + +P P L P P ++G G + PP P P PG
Sbjct: 1398 -EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM---GPPGLPG 1453
Query: 213 PTAPPARVREPGR----------AEGASREPRLRSRAARPPPAPG----PGALSRASRSR 258
P E G E + R P A G PG
Sbjct: 1454 LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPG 1513
Query: 259 AAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
G PGP G K + A G PG G PP Q
Sbjct: 1514 PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1556
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 66.6 bits (161), Expect = 5e-11
Identities = 94/359 (26%), Positives = 117/359 (32%), Gaps = 59/359 (16%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
P G G+ G P FP A G + G A P P R +RG T +
Sbjct: 801 PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 860
Query: 130 LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP-------PVYLGNKPT 182
G K + PP PP G + P P P
Sbjct: 861 PGPKGTSGG-------------DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 907
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREPGRA--EG 228
P Q G G + K+ PP P P PGP PP PG A EG
Sbjct: 908 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 967
Query: 229 ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN-- 286
A +P + + + PA G A G PG GGE P P G G
Sbjct: 968 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQG--APGLKGGEGPQGPPGPVGSPGERGS 1025
Query: 287 ---------PGALGRAAPPSRA-RQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG---- 332
PG G PP A + A G G R G G P +G
Sbjct: 1026 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1085
Query: 333 NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
+G++ ++ G +GE +GP PPG + VGA + G GE RG Q
Sbjct: 1086 DGDKGEIGEPGQKGSKGDKGE-----NGPPGPPGLQ--GPVGAPGIAGGDGEPGPRGQQ 1137
Score = 56.2 bits (134), Expect = 6e-08
Identities = 76/280 (27%), Positives = 96/280 (34%), Gaps = 31/280 (11%)
Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
P + QE +AI Q+ P+ L +P P GS G + +S P PQ
Sbjct: 468 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 527
Query: 208 APQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265
PGPT P + PG G EP + PG G PGP
Sbjct: 528 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 587
Query: 266 ----GFHGGEKAAAPRA-PGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCD 320
G G + PR PG G R G LG P Q G++G +G+
Sbjct: 588 PGDDGMRGEDGEIGPRGLPGEAGPR--GLLGPRGTPGAPGQP--GMAGVDGPPGPKGNMG 643
Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPGRRHDEEVGA 375
G PP GN + G GE G G PPG H + G
Sbjct: 644 PQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG--HPGKEGQ 701
Query: 376 AVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSN 415
+ + G +G P PR V GA G R LK +
Sbjct: 702 SGEKGALGPPGPQGPIGYPGPRGVKGA----DGVRGLKGS 737
Score = 52.8 bits (125), Expect = 7e-07
Identities = 65/234 (27%), Positives = 82/234 (35%), Gaps = 25/234 (10%)
Query: 174 PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEG 228
P+ L P PP ++G G G P PP P+ P GP PP V G G
Sbjct: 1157 PIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGADGPQGPPGSVGSVG-GVG 1213
Query: 229 ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGR-NP 287
EP P A G AG PG G K PG G + NP
Sbjct: 1214 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG----PPGDDGPKGNP 1269
Query: 288 GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRRR 346
G +G P + G +G VG +G+ G PP SG G +R
Sbjct: 1270 GPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1327
Query: 347 GGGGEG----EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 396
G EG +G G PPG+ G + +G+ GL+ P P
Sbjct: 1328 AAGAEGRQGEKGAKGEAGAEGPPGK-----TGPVGPQGPAGKPGPEGLRGIPGP 1376
Score = 52.8 bits (125), Expect = 7e-07
Identities = 59/204 (28%), Positives = 71/204 (34%), Gaps = 23/204 (11%)
Query: 174 PVYLGNKPTPPRQEGSFG----GRPKSQPPLPQETAAPAP--QPGPTAPPARVREPGR-- 225
PV P PP + G G G K + P + P P + GP PP + PG
Sbjct: 1271 PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAG 1330
Query: 226 AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP-GFHGGEKAAAPRAPGGGGG 284
AEG E + A P PG AG+PGP G G PG G
Sbjct: 1331 AEGRQGEKGAKGEAGAEGP---PGKTGPVGPQGPAGKPGPEGLRG--------IPGPVGE 1379
Query: 285 RN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRR 342
+ PGA G+ PP GL G +G G PP G
Sbjct: 1380 QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGT 1439
Query: 343 RRRRGGGGEGEGTHATHGPASPPG 366
+ G G+G G GP PPG
Sbjct: 1440 QGSPGAKGDG-GIPGPAGPLGPPG 1462
Score = 48.1 bits (113), Expect = 2e-05
Identities = 77/281 (27%), Positives = 96/281 (34%), Gaps = 68/281 (24%)
Query: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAP---------PARVREPGRA-----------E 227
G G R + P P+ A P PGP+ P PGR
Sbjct: 763 GQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFP 822
Query: 228 GASREPRLRSRAARPPPAPGPGAL----SRASRSRAAGRPGP-GFHGGEKAAAPRAPGGG 282
GA+ E R A +P P G SR +R G+PGP G GG+ P PG
Sbjct: 823 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARG-PTGKPGPKGTSGGD--GPPGPPGER 879
Query: 283 GGRNP----GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG------ 332
G + P G G PP +D GL G +RG+ G + PP G
Sbjct: 880 GPQGPQGPVGFPGPKGPPGPPGKD--GLPGHPG---QRGETGFQGKTGPPGPGGVVGPQG 934
Query: 333 -NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
GE G GE H GP PPG + GAA G+ +G+
Sbjct: 935 PTGET------------GPIGERGHP--GPPGPPGEQ--GLPGAAGKEGAKGDPGPQGIS 978
Query: 392 LTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPK 432
P + G F G R L P G GP+
Sbjct: 979 GKDGPAGLRG----FPGERGLP----GAQGAPGLKGGEGPQ 1011
Score = 43.1 bits (100), Expect = 6e-04
Identities = 67/249 (26%), Positives = 83/249 (33%), Gaps = 61/249 (24%)
Query: 153 LPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFG--GRPKSQPPLPQE-TAAPAP 209
LP RP P Q PP G K P ++G G GR Q P+ A PA
Sbjct: 1034 LPGRPGP-----------QGPPGPAGEKGAPG-EKGPQGPAGRDGVQGPVGLPGPAGPAG 1081
Query: 210 QPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHG 269
PG + EPG+ S+ + + PP GP PG G
Sbjct: 1082 SPGEDGDKGEIGEPGQK--GSKGDKGENGPPGPPGLQGPVG-------------APGIAG 1126
Query: 270 GEKAAAPRAPGGGGGR--NPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQP 327
G+ PR G G+ + GA G PP GL G +G+ G P
Sbjct: 1127 GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI-----GLQGLPGPPGEKGENGDVGPMGP 1181
Query: 328 PATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSR 387
P G RG +G + GP PPG VG+ G GE
Sbjct: 1182 PGPPG------------PRG----PQGPNGADGPQGPPG-----SVGSV---GGVGEKGE 1217
Query: 388 RGLQLTPPP 396
G P P
Sbjct: 1218 PGEAGNPGP 1226
Score = 42.0 bits (97), Expect = 0.001
Identities = 104/437 (23%), Positives = 132/437 (30%), Gaps = 116/437 (26%)
Query: 74 GDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNR-GPSAGTSQLGK 132
G+ G G P P KG G PP P PGD R GP + G
Sbjct: 553 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP-PGDDGMRGEDGEIGPRGLPGEAGP 611
Query: 133 KTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGN-----KPTPPRQE 187
+ GL L PR P A PP GN +P PP Q+
Sbjct: 612 R-----------GL------LGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQ 654
Query: 188 GSFG--GRPKSQPPL-------PQETAAPAPQPGPTAPPARVREPGRA--EGASREPRLR 236
G+ G G P Q P+ PQ A PG PP + G++ +GA P +
Sbjct: 655 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 714
Query: 237 SRAARPPPA-----------------------PG----------------------PGAL 251
P P PG G
Sbjct: 715 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPE 774
Query: 252 SRASRSRAAGRPGPGFHGGEKA--AAPRAPGGGGGRNP-GALGRAAPPSRARQDAWGLSG 308
R+ G PGP GEK P PG G + P G+ G P A G G
Sbjct: 775 GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG-----ANGEKG 829
Query: 309 CATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRR 368
V + G + G + P R R R G +GT GP PPG R
Sbjct: 830 ARGVAGKPGPRGQRGPTGP----------RGSRGARGPTGKPGPKGTSGGDGPPGPPGER 879
Query: 369 HDE----EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPR 424
+ VG + G + GL P G+ ++ + T P
Sbjct: 880 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHP--------------GQRGETGFQGKTGPPG 925
Query: 425 RSGASGPKMVADQTSGI 441
G GP+ +T I
Sbjct: 926 PGGVVGPQGPTGETGPI 942
Score = 41.2 bits (95), Expect = 0.002
Identities = 67/258 (25%), Positives = 83/258 (32%), Gaps = 65/258 (25%)
Query: 165 GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPG 224
G+ A+ + P + + P P G G PP Q P PG PP R PG
Sbjct: 390 GEPAVVE-PGMLVEGPPGPAGPAGIMG------PPGLQGPTGPPGDPGDRGPPGRPGLPG 442
Query: 225 RAEGASREP--------RLRSRAARPPPAPGPGALSRASRSRA-------------AGRP 263
A+G P R ++ P A ++A +A GRP
Sbjct: 443 -ADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP 501
Query: 264 GP-------GFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRR 316
GP G G P+ P G G PG G+ P R R A G G +
Sbjct: 502 GPVGGPGSSGAKGESGDPGPQGPRGVQG-PPGPTGK--PGKRGRPGADGGRGMPGEPGAK 558
Query: 317 GDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG----RRHDEE 372
GD G P G+ G GP PPG R D E
Sbjct: 559 GDRGFDGLPGLPGDKGH-------------------RGERGPQGPPGPPGDDGMRGEDGE 599
Query: 373 VGAAVLRAGSGEGSRRGL 390
+G R GE RGL
Sbjct: 600 IGP---RGLPGEAGPRGL 614
Score = 30.8 bits (68), Expect = 2.8
Identities = 53/223 (23%), Positives = 65/223 (29%), Gaps = 28/223 (12%)
Query: 94 KGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLEL 153
KG G+ PP P P RGP G++ + + KG
Sbjct: 1296 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-----KGEAGA---- 1346
Query: 154 PPRPPPNLQEGGQRAIFQRP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
PP G + +P P L P P ++G G + PP P P PG
Sbjct: 1347 -EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM---GPPGLPG 1402
Query: 213 PTAPPARVREPGR----------AEGASREPRLRSRAARPPPAPG----PGALSRASRSR 258
P E G E + R P A G PG
Sbjct: 1403 LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPG 1462
Query: 259 AAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
G PGP G K + A G PG G PP Q
Sbjct: 1463 PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1505
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 66.6 bits (161), Expect = 5e-11
Identities = 94/359 (26%), Positives = 117/359 (32%), Gaps = 59/359 (16%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
P G G+ G P FP A G + G A P P R +RG T +
Sbjct: 840 PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 899
Query: 130 LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP-------PVYLGNKPT 182
G K + PP PP G + P P P
Sbjct: 900 PGPKGTSGG-------------DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 946
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREPGRA--EG 228
P Q G G + K+ PP P P PGP PP PG A EG
Sbjct: 947 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1006
Query: 229 ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN-- 286
A +P + + + PA G A G PG GGE P P G G
Sbjct: 1007 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQG--APGLKGGEGPQGPPGPVGSPGERGS 1064
Query: 287 ---------PGALGRAAPPSRA-RQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG---- 332
PG G PP A + A G G R G G P +G
Sbjct: 1065 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1124
Query: 333 NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
+G++ ++ G +GE +GP PPG + VGA + G GE RG Q
Sbjct: 1125 DGDKGEIGEPGQKGSKGDKGE-----NGPPGPPGLQ--GPVGAPGIAGGDGEPGPRGQQ 1176
Score = 56.2 bits (134), Expect = 6e-08
Identities = 76/280 (27%), Positives = 96/280 (34%), Gaps = 31/280 (11%)
Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
P + QE +AI Q+ P+ L +P P GS G + +S P PQ
Sbjct: 507 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 566
Query: 208 APQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265
PGPT P + PG G EP + PG G PGP
Sbjct: 567 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 626
Query: 266 ----GFHGGEKAAAPRA-PGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCD 320
G G + PR PG G R G LG P Q G++G +G+
Sbjct: 627 PGDDGMRGEDGEIGPRGLPGEAGPR--GLLGPRGTPGAPGQP--GMAGVDGPPGPKGNMG 682
Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPGRRHDEEVGA 375
G PP GN + G GE G G PPG H + G
Sbjct: 683 PQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG--HPGKEGQ 740
Query: 376 AVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSN 415
+ + G +G P PR V GA G R LK +
Sbjct: 741 SGEKGALGPPGPQGPIGYPGPRGVKGA----DGVRGLKGS 776
Score = 52.8 bits (125), Expect = 7e-07
Identities = 65/234 (27%), Positives = 82/234 (35%), Gaps = 25/234 (10%)
Query: 174 PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEG 228
P+ L P PP ++G G G P PP P+ P GP PP V G G
Sbjct: 1196 PIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGADGPQGPPGSVGSVG-GVG 1252
Query: 229 ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGR-NP 287
EP P A G AG PG G K PG G + NP
Sbjct: 1253 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG----PPGDDGPKGNP 1308
Query: 288 GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRRR 346
G +G P + G +G VG +G+ G PP SG G +R
Sbjct: 1309 GPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1366
Query: 347 GGGGEG----EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 396
G EG +G G PPG+ G + +G+ GL+ P P
Sbjct: 1367 AAGAEGRQGEKGAKGEAGAEGPPGK-----TGPVGPQGPAGKPGPEGLRGIPGP 1415
Score = 52.8 bits (125), Expect = 7e-07
Identities = 59/204 (28%), Positives = 71/204 (34%), Gaps = 23/204 (11%)
Query: 174 PVYLGNKPTPPRQEGSFG----GRPKSQPPLPQETAAPAP--QPGPTAPPARVREPGR-- 225
PV P PP + G G G K + P + P P + GP PP + PG
Sbjct: 1310 PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAG 1369
Query: 226 AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP-GFHGGEKAAAPRAPGGGGG 284
AEG E + A P PG AG+PGP G G PG G
Sbjct: 1370 AEGRQGEKGAKGEAGAEGP---PGKTGPVGPQGPAGKPGPEGLRG--------IPGPVGE 1418
Query: 285 RN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRR 342
+ PGA G+ PP GL G +G G PP G
Sbjct: 1419 QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGT 1478
Query: 343 RRRRGGGGEGEGTHATHGPASPPG 366
+ G G+G G GP PPG
Sbjct: 1479 QGSPGAKGDG-GIPGPAGPLGPPG 1501
Score = 48.1 bits (113), Expect = 2e-05
Identities = 77/281 (27%), Positives = 96/281 (34%), Gaps = 68/281 (24%)
Query: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAP---------PARVREPGRA-----------E 227
G G R + P P+ A P PGP+ P PGR
Sbjct: 802 GQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFP 861
Query: 228 GASREPRLRSRAARPPPAPGPGAL----SRASRSRAAGRPGP-GFHGGEKAAAPRAPGGG 282
GA+ E R A +P P G SR +R G+PGP G GG+ P PG
Sbjct: 862 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARG-PTGKPGPKGTSGGD--GPPGPPGER 918
Query: 283 GGRNP----GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG------ 332
G + P G G PP +D GL G +RG+ G + PP G
Sbjct: 919 GPQGPQGPVGFPGPKGPPGPPGKD--GLPGHPG---QRGETGFQGKTGPPGPGGVVGPQG 973
Query: 333 -NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 391
GE G GE H GP PPG + GAA G+ +G+
Sbjct: 974 PTGET------------GPIGERGHP--GPPGPPGEQ--GLPGAAGKEGAKGDPGPQGIS 1017
Query: 392 LTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPK 432
P + G F G R L P G GP+
Sbjct: 1018 GKDGPAGLRG----FPGERGLP----GAQGAPGLKGGEGPQ 1050
Score = 43.1 bits (100), Expect = 6e-04
Identities = 67/249 (26%), Positives = 83/249 (33%), Gaps = 61/249 (24%)
Query: 153 LPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFG--GRPKSQPPLPQE-TAAPAP 209
LP RP P Q PP G K P ++G G GR Q P+ A PA
Sbjct: 1073 LPGRPGP-----------QGPPGPAGEKGAPG-EKGPQGPAGRDGVQGPVGLPGPAGPAG 1120
Query: 210 QPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHG 269
PG + EPG+ S+ + + PP GP PG G
Sbjct: 1121 SPGEDGDKGEIGEPGQK--GSKGDKGENGPPGPPGLQGPVG-------------APGIAG 1165
Query: 270 GEKAAAPRAPGGGGGR--NPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQP 327
G+ PR G G+ + GA G PP GL G +G+ G P
Sbjct: 1166 GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPI-----GLQGLPGPPGEKGENGDVGPMGP 1220
Query: 328 PATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSR 387
P G RG +G + GP PPG VG+ G GE
Sbjct: 1221 PGPPG------------PRG----PQGPNGADGPQGPPG-----SVGSV---GGVGEKGE 1256
Query: 388 RGLQLTPPP 396
G P P
Sbjct: 1257 PGEAGNPGP 1265
Score = 42.0 bits (97), Expect = 0.001
Identities = 104/437 (23%), Positives = 132/437 (30%), Gaps = 116/437 (26%)
Query: 74 GDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNR-GPSAGTSQLGK 132
G+ G G P P KG G PP P PGD R GP + G
Sbjct: 592 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP-PGDDGMRGEDGEIGPRGLPGEAGP 650
Query: 133 KTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGN-----KPTPPRQE 187
+ GL L PR P A PP GN +P PP Q+
Sbjct: 651 R-----------GL------LGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQ 693
Query: 188 GSFG--GRPKSQPPL-------PQETAAPAPQPGPTAPPARVREPGRA--EGASREPRLR 236
G+ G G P Q P+ PQ A PG PP + G++ +GA P +
Sbjct: 694 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 753
Query: 237 SRAARPPPA-----------------------PG----------------------PGAL 251
P P PG G
Sbjct: 754 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPE 813
Query: 252 SRASRSRAAGRPGPGFHGGEKA--AAPRAPGGGGGRNP-GALGRAAPPSRARQDAWGLSG 308
R+ G PGP GEK P PG G + P G+ G P A G G
Sbjct: 814 GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG-----ANGEKG 868
Query: 309 CATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRR 368
V + G + G + P R R R G +GT GP PPG R
Sbjct: 869 ARGVAGKPGPRGQRGPTGP----------RGSRGARGPTGKPGPKGTSGGDGPPGPPGER 918
Query: 369 HDE----EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPR 424
+ VG + G + GL P G+ ++ + T P
Sbjct: 919 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHP--------------GQRGETGFQGKTGPPG 964
Query: 425 RSGASGPKMVADQTSGI 441
G GP+ +T I
Sbjct: 965 PGGVVGPQGPTGETGPI 981
Score = 41.2 bits (95), Expect = 0.002
Identities = 67/258 (25%), Positives = 83/258 (32%), Gaps = 65/258 (25%)
Query: 165 GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPG 224
G+ A+ + P + + P P G G PP Q P PG PP R PG
Sbjct: 429 GEPAVVE-PGMLVEGPPGPAGPAGIMG------PPGLQGPTGPPGDPGDRGPPGRPGLPG 481
Query: 225 RAEGASREP--------RLRSRAARPPPAPGPGALSRASRSRA-------------AGRP 263
A+G P R ++ P A ++A +A GRP
Sbjct: 482 -ADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP 540
Query: 264 GP-------GFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRR 316
GP G G P+ P G G PG G+ P R R A G G +
Sbjct: 541 GPVGGPGSSGAKGESGDPGPQGPRGVQG-PPGPTGK--PGKRGRPGADGGRGMPGEPGAK 597
Query: 317 GDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG----RRHDEE 372
GD G P G+ G GP PPG R D E
Sbjct: 598 GDRGFDGLPGLPGDKGH-------------------RGERGPQGPPGPPGDDGMRGEDGE 638
Query: 373 VGAAVLRAGSGEGSRRGL 390
+G R GE RGL
Sbjct: 639 IGP---RGLPGEAGPRGL 653
Score = 30.8 bits (68), Expect = 2.8
Identities = 53/223 (23%), Positives = 65/223 (29%), Gaps = 28/223 (12%)
Query: 94 KGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLEL 153
KG G+ PP P P RGP G++ + + KG
Sbjct: 1335 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-----KGEAGA---- 1385
Query: 154 PPRPPPNLQEGGQRAIFQRP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
PP G + +P P L P P ++G G + PP P P PG
Sbjct: 1386 -EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM---GPPGLPG 1441
Query: 213 PTAPPARVREPGR----------AEGASREPRLRSRAARPPPAPG----PGALSRASRSR 258
P E G E + R P A G PG
Sbjct: 1442 LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPG 1501
Query: 259 AAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
G PGP G K + A G PG G PP Q
Sbjct: 1502 PPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1544
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 62.8 bits (151), Expect = 7e-10
Identities = 100/371 (26%), Positives = 122/371 (32%), Gaps = 83/371 (22%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRH-RKNRGPSAGTS 128
P G G+ G L P FP A G + G + P G+ P R RGP T
Sbjct: 712 PGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPR-GERGPTGPRGQRGPRGATG 770
Query: 129 QLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIF--QRPPVYLGNKPTP--- 183
+ G K T G P PP G+R + Q P + G K P
Sbjct: 771 KSGAKG--------TSGGDG------PHGPP-----GERGLPGPQGPNGFPGPKGPPGPP 811
Query: 184 --------PRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREP 223
P Q G G + K+ PP P P PGP PP P
Sbjct: 812 GKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 871
Query: 224 GRA--EGASREPRLRSRAARPPPAP---GPGALS--RASRSRAAGRPGPGFHGGEKAAAP 276
G A EG +P PP AP GP L R GPG G E + P
Sbjct: 872 GTAGKEGTKGDP-------GPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGP 924
Query: 277 RAPGGGGGRN-----------PGALGRAAPPSRARQDA----WGLSGCATVGLRRGDCDR 321
P G G PG G PP A + G G +G
Sbjct: 925 PGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL 984
Query: 322 AGSSQPPATSG-NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 380
G + PP +G +G++ ++ G +GE HGP PPG VG
Sbjct: 985 PGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGE-----HGPPGPPG--PIGPVGQPGAAG 1037
Query: 381 GSGEGSRRGLQ 391
GE RG Q
Sbjct: 1038 ADGEPGARGPQ 1048
Score = 50.1 bits (118), Expect = 5e-06
Identities = 67/260 (25%), Positives = 88/260 (33%), Gaps = 45/260 (17%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPR------QEGSFGGRPKSQPPLPQETAAP 207
PP P + G + PV P PP Q+G+ G R + P + +P
Sbjct: 1164 PPGPKGPTGDDGPKG--NPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP--GQPGSP 1219
Query: 208 APQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP--GPGALSRASRSRAAGRPGP 265
P G PP + + G A E R + A+ P PG + AG+PGP
Sbjct: 1220 GPT-GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1278
Query: 266 -GFHGGEKAAAPRAPGGGGGRN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRA 322
G G PG G + PGA G+A PP GL G A +G
Sbjct: 1279 DGLRG--------LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLI 1330
Query: 323 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGS 382
G PP G +G GP PG++ E+G
Sbjct: 1331 GLIGPPGEQGE-------------------KGDRGLPGPQGSPGQK--GEMGIPGASGPI 1369
Query: 383 GEGSRRGLQLTPPPRRVHGA 402
G G GL P+ GA
Sbjct: 1370 GPGGPPGLPGPAGPKGAKGA 1389
Score = 45.1 bits (105), Expect = 1e-04
Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 46/252 (18%)
Query: 174 PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVRE---PGR 225
P+ L P P ++G G G P PP P+ A P GP PP V PG
Sbjct: 1068 PIGLQGLPGPSGEKGETGDVGPMGPPG--PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1125
Query: 226 --AEGASREPRLRSRAARPPPAPGP-GALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGG 282
G S P ++ P GP G S G PGP P+ P G
Sbjct: 1126 KGEPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPGP--------PGPKGPTGD 1173
Query: 283 GG--RNPGALGRAAPPS-------RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN 333
G NPG +G P R + A G G + G G + PP G
Sbjct: 1174 DGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGK 1233
Query: 334 GERCRFCRRRRRRGG-GGEGE-------GTHATHGPASPPGRRHDEEVGAAVLRAGSGEG 385
R+GG G +G+ G GPA P G+ + G L G+
Sbjct: 1234 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPD--GLRGLPGSVGQQ 1291
Query: 386 SRRGL--QLTPP 395
R G Q PP
Sbjct: 1292 GRPGATGQAGPP 1303
Score = 43.5 bits (101), Expect = 4e-04
Identities = 93/361 (25%), Positives = 113/361 (31%), Gaps = 90/361 (24%)
Query: 110 PGDHHPRHRKNRGPSAGTSQLGK-KTQCRSLFLRTKGLCALLLE---LPP-----RPPPN 160
P + P HR R P S+L + + Q T G +LE LPP P
Sbjct: 236 PQNQQP-HRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRG 294
Query: 161 LQ-EGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR 219
L+ E G+ A+ + P + + P P G G PP Q P PG PP R
Sbjct: 295 LKGEKGEPAVLE-PGMLVEGPPGPEGPAGLIG------PPGIQGNPGPVGDPGERGPPGR 347
Query: 220 VREPGRAEGASREP--------RLRSRAARPPPAPG--------------------PGAL 251
PG ++GA P R S P PG +
Sbjct: 348 AGLPG-SDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPM 406
Query: 252 SRASRSRAAGRPG-PGFHGGEKAAAPRAPGGGGGRN--PGALGRAA-------------P 295
R G+PG PG G P+ P G G PG GR P
Sbjct: 407 GYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDP 466
Query: 296 PSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE---- 351
+ + GL G RGD G PP G RG GE
Sbjct: 467 GVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDG------------ERGDDGEIGPR 514
Query: 352 ---GE-GTHATHGPASPPG-------RRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVH 400
GE G GP PPG R D G GE G Q TP + +
Sbjct: 515 GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLP 574
Query: 401 G 401
G
Sbjct: 575 G 575
Score = 42.0 bits (97), Expect = 0.001
Identities = 50/191 (26%), Positives = 62/191 (32%), Gaps = 40/191 (20%)
Query: 174 PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASR 231
PV L PP G G + + P + T + GP PP + G+ A GA
Sbjct: 981 PVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADG 1040
Query: 232 EPRLR-------------SRAARPPPA-------PGP-GALSRASRSRAAGRPGPGFHGG 270
EP R +R PP PGP G G PGP
Sbjct: 1041 EPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGP----- 1095
Query: 271 EKAAAPRAPGGGGGRN-----PGALGRAAPPSR----ARQDAWGLSGCATVGLRRGDCDR 321
PR P G G + PG +G PP + G+ G V RG+
Sbjct: 1096 ---PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGE 1152
Query: 322 AGSSQPPATSG 332
G S P G
Sbjct: 1153 KGESGQPGEPG 1163
Score = 38.5 bits (88), Expect = 0.014
Identities = 93/357 (26%), Positives = 116/357 (32%), Gaps = 69/357 (19%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLP----HPGDHHPRHRKNRGPSA 125
P ++G G+ A G P P KG +G P LP H GD + GP
Sbjct: 445 PGKAGRRGRAGADGARGMPGDPGVKGDRGFDG--LPGLPGEKGHRGDTGAQGLP--GPPG 500
Query: 126 GTSQLGKKTQCRSLFLR----TKGLCALLLELPPRPPPNLQ-EGGQRAIF--QRPPVYLG 178
+ G + L +GL L P+ PP + G R + Q P LG
Sbjct: 501 EDGERGDDGEIGPRGLPGESGPRGL------LGPKGPPGIPGPPGVRGMDGPQGPKGSLG 554
Query: 179 --NKPTPPRQEGSFG--GRPKSQPPL-PQETAAPAPQPGPTAPPARVREPGRAEGASREP 233
+P PP Q+G+ G G P Q + P P +PG P PG G P
Sbjct: 555 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHP-GKEGPP 613
Query: 234 RLRSRAARPPPA-----PGPGALSRASRSRAA-------GRPG-PGFHGGEKAAAPRA-- 278
+ P PGP + R G G PGF G R
Sbjct: 614 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEV 673
Query: 279 --PGGGGGRNP-------GALGRAAPPS-RARQDAWGLSGCATVGLRRGDCDRAGSSQPP 328
PG G P G G PP + G+ G R+G G P
Sbjct: 674 GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFP 733
Query: 329 ATSGN-------------GERCRFCRRRRRRGGGGEGE----GTHATHGPASPPGRR 368
SG GER R +R G G+ GT GP PPG R
Sbjct: 734 GASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER 790
Score = 36.2 bits (82), Expect = 0.068
Identities = 78/303 (25%), Positives = 97/303 (32%), Gaps = 67/303 (22%)
Query: 181 PTPPRQEGSFGGRPKSQP-PLPQETAAPAPQPGPTAPPARVREPG-RAEGASREPR--LR 236
P PP ++G G + P LP E + P GP PP PG R + P+ L
Sbjct: 496 PGPPGEDGERGDDGEIGPRGLPGE-SGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLG 554
Query: 237 SRAARPPPA----------PGP-GALSRASRSRAAGRPG-PGFHGGE-------KAAAPR 277
+ PP PGP GA+ G+PG PG G + K P
Sbjct: 555 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPG 614
Query: 278 APGGGGGRNP-GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN--- 333
G G P G LG P G+ G + +G G P G+
Sbjct: 615 TKGNQGPSGPQGPLGYPGPR--------GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGV 666
Query: 334 -GERCRFCRRRRRRGGGGEG-EGTHATHGPASPPGRRHDE-------------------E 372
G+R R G EG +G G PPG ++
Sbjct: 667 KGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 726
Query: 373 VGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL----QRFGGGRNLKSNWMSTTRTPRRSGA 428
+G SGE RGL PR G QR G KS T SG
Sbjct: 727 LGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGT------SGG 780
Query: 429 SGP 431
GP
Sbjct: 781 DGP 783
Score = 30.0 bits (66), Expect = 4.9
Identities = 42/153 (27%), Positives = 47/153 (30%), Gaps = 30/153 (19%)
Query: 174 PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR--VREPGRAEGASR 231
P KP P G G + P A P PGP PP +R A+G
Sbjct: 1269 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRGDAGAKGEKG 1325
Query: 232 EPRL------------RSRAARPPP--APG-------PGALSRASRSRAAGRPGPGFHGG 270
P L + P P +PG PGA G PGP G
Sbjct: 1326 HPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1385
Query: 271 EKAAAPRAPGGGGGRN--PGALGRAAPPSRARQ 301
K A PGG G G G PP Q
Sbjct: 1386 AKGAT--GPGGPKGEKGVQGPPGHPGPPGEVIQ 1416
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 62.8 bits (151), Expect = 7e-10
Identities = 100/371 (26%), Positives = 122/371 (32%), Gaps = 83/371 (22%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRH-RKNRGPSAGTS 128
P G G+ G L P FP A G + G + P G+ P R RGP T
Sbjct: 691 PGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPR-GERGPTGPRGQRGPRGATG 749
Query: 129 QLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIF--QRPPVYLGNKPTP--- 183
+ G K T G P PP G+R + Q P + G K P
Sbjct: 750 KSGAKG--------TSGGDG------PHGPP-----GERGLPGPQGPNGFPGPKGPPGPP 790
Query: 184 --------PRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREP 223
P Q G G + K+ PP P P PGP PP P
Sbjct: 791 GKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 850
Query: 224 GRA--EGASREPRLRSRAARPPPAP---GPGALS--RASRSRAAGRPGPGFHGGEKAAAP 276
G A EG +P PP AP GP L R GPG G E + P
Sbjct: 851 GTAGKEGTKGDP-------GPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGP 903
Query: 277 RAPGGGGGRN-----------PGALGRAAPPSRARQDA----WGLSGCATVGLRRGDCDR 321
P G G PG G PP A + G G +G
Sbjct: 904 PGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL 963
Query: 322 AGSSQPPATSG-NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 380
G + PP +G +G++ ++ G +GE HGP PPG VG
Sbjct: 964 PGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGE-----HGPPGPPG--PIGPVGQPGAAG 1016
Query: 381 GSGEGSRRGLQ 391
GE RG Q
Sbjct: 1017 ADGEPGARGPQ 1027
Score = 50.1 bits (118), Expect = 5e-06
Identities = 67/260 (25%), Positives = 88/260 (33%), Gaps = 45/260 (17%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPR------QEGSFGGRPKSQPPLPQETAAP 207
PP P + G + PV P PP Q+G+ G R + P + +P
Sbjct: 1143 PPGPKGPTGDDGPKG--NPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP--GQPGSP 1198
Query: 208 APQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP--GPGALSRASRSRAAGRPGP 265
P G PP + + G A E R + A+ P PG + AG+PGP
Sbjct: 1199 GPT-GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1257
Query: 266 -GFHGGEKAAAPRAPGGGGGRN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRA 322
G G PG G + PGA G+A PP GL G A +G
Sbjct: 1258 DGLRG--------LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLI 1309
Query: 323 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGS 382
G PP G +G GP PG++ E+G
Sbjct: 1310 GLIGPPGEQGE-------------------KGDRGLPGPQGSPGQK--GEMGIPGASGPI 1348
Query: 383 GEGSRRGLQLTPPPRRVHGA 402
G G GL P+ GA
Sbjct: 1349 GPGGPPGLPGPAGPKGAKGA 1368
Score = 45.1 bits (105), Expect = 1e-04
Identities = 76/282 (26%), Positives = 94/282 (33%), Gaps = 56/282 (19%)
Query: 163 EGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVRE 222
EGGQR Q + + P+Q+ S RP++Q P Q P G PA V E
Sbjct: 229 EGGQRERPQNQQPHRAQRS--PQQQPSRLHRPQNQEPQSQAAHGPRGLKGEKGEPA-VLE 285
Query: 223 PGRAEGASREPRLRSRAARPPPA---PGP-------GALSRASRSRAAGRPGP------- 265
PG P + PP PGP G RA + G PGP
Sbjct: 286 PGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLML 345
Query: 266 ----GFHGGEKA---------------------AAPRAPGGGGGRNPGALGRAAPPSRAR 300
G GG+K P P G GR PG LG+ P
Sbjct: 346 PFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGR-PGPLGQPGSP---- 400
Query: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
GL G + +G G + PP +G R R G G +G G
Sbjct: 401 ----GLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGV-KGDRGFDG 455
Query: 361 -PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG 401
P P + H + GA L GE RG PR + G
Sbjct: 456 LPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPG 497
Score = 45.1 bits (105), Expect = 1e-04
Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 46/252 (18%)
Query: 174 PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVRE---PGR 225
P+ L P P ++G G G P PP P+ A P GP PP V PG
Sbjct: 1047 PIGLQGLPGPSGEKGETGDVGPMGPPG--PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1104
Query: 226 --AEGASREPRLRSRAARPPPAPGP-GALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGG 282
G S P ++ P GP G S G PGP P+ P G
Sbjct: 1105 KGEPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPGP--------PGPKGPTGD 1152
Query: 283 GG--RNPGALGRAAPPS-------RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN 333
G NPG +G P R + A G G + G G + PP G
Sbjct: 1153 DGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGK 1212
Query: 334 GERCRFCRRRRRRGG-GGEGE-------GTHATHGPASPPGRRHDEEVGAAVLRAGSGEG 385
R+GG G +G+ G GPA P G+ + G L G+
Sbjct: 1213 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPD--GLRGLPGSVGQQ 1270
Query: 386 SRRGL--QLTPP 395
R G Q PP
Sbjct: 1271 GRPGATGQAGPP 1282
Score = 42.0 bits (97), Expect = 0.001
Identities = 50/191 (26%), Positives = 62/191 (32%), Gaps = 40/191 (20%)
Query: 174 PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASR 231
PV L PP G G + + P + T + GP PP + G+ A GA
Sbjct: 960 PVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADG 1019
Query: 232 EPRLR-------------SRAARPPPA-------PGP-GALSRASRSRAAGRPGPGFHGG 270
EP R +R PP PGP G G PGP
Sbjct: 1020 EPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGP----- 1074
Query: 271 EKAAAPRAPGGGGGRN-----PGALGRAAPPSR----ARQDAWGLSGCATVGLRRGDCDR 321
PR P G G + PG +G PP + G+ G V RG+
Sbjct: 1075 ---PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGE 1131
Query: 322 AGSSQPPATSG 332
G S P G
Sbjct: 1132 KGESGQPGEPG 1142
Score = 38.5 bits (88), Expect = 0.014
Identities = 93/357 (26%), Positives = 116/357 (32%), Gaps = 69/357 (19%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLP----HPGDHHPRHRKNRGPSA 125
P ++G G+ A G P P KG +G P LP H GD + GP
Sbjct: 424 PGKAGRRGRAGADGARGMPGDPGVKGDRGFDG--LPGLPGEKGHRGDTGAQGLP--GPPG 479
Query: 126 GTSQLGKKTQCRSLFLR----TKGLCALLLELPPRPPPNLQ-EGGQRAIF--QRPPVYLG 178
+ G + L +GL L P+ PP + G R + Q P LG
Sbjct: 480 EDGERGDDGEIGPRGLPGESGPRGL------LGPKGPPGIPGPPGVRGMDGPQGPKGSLG 533
Query: 179 --NKPTPPRQEGSFG--GRPKSQPPL-PQETAAPAPQPGPTAPPARVREPGRAEGASREP 233
+P PP Q+G+ G G P Q + P P +PG P PG G P
Sbjct: 534 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHP-GKEGPP 592
Query: 234 RLRSRAARPPPA-----PGPGALSRASRSRAA-------GRPG-PGFHGGEKAAAPRA-- 278
+ P PGP + R G G PGF G R
Sbjct: 593 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEV 652
Query: 279 --PGGGGGRNP-------GALGRAAPPS-RARQDAWGLSGCATVGLRRGDCDRAGSSQPP 328
PG G P G G PP + G+ G R+G G P
Sbjct: 653 GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFP 712
Query: 329 ATSGN-------------GERCRFCRRRRRRGGGGEGE----GTHATHGPASPPGRR 368
SG GER R +R G G+ GT GP PPG R
Sbjct: 713 GASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER 769
Score = 36.2 bits (82), Expect = 0.068
Identities = 78/303 (25%), Positives = 97/303 (32%), Gaps = 67/303 (22%)
Query: 181 PTPPRQEGSFGGRPKSQP-PLPQETAAPAPQPGPTAPPARVREPG-RAEGASREPR--LR 236
P PP ++G G + P LP E + P GP PP PG R + P+ L
Sbjct: 475 PGPPGEDGERGDDGEIGPRGLPGE-SGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLG 533
Query: 237 SRAARPPPA----------PGP-GALSRASRSRAAGRPG-PGFHGGE-------KAAAPR 277
+ PP PGP GA+ G+PG PG G + K P
Sbjct: 534 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPG 593
Query: 278 APGGGGGRNP-GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN--- 333
G G P G LG P G+ G + +G G P G+
Sbjct: 594 TKGNQGPSGPQGPLGYPGPR--------GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGV 645
Query: 334 -GERCRFCRRRRRRGGGGEG-EGTHATHGPASPPGRRHDE-------------------E 372
G+R R G EG +G G PPG ++
Sbjct: 646 KGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 705
Query: 373 VGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL----QRFGGGRNLKSNWMSTTRTPRRSGA 428
+G SGE RGL PR G QR G KS T SG
Sbjct: 706 LGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGT------SGG 759
Query: 429 SGP 431
GP
Sbjct: 760 DGP 762
Score = 30.0 bits (66), Expect = 4.9
Identities = 42/153 (27%), Positives = 47/153 (30%), Gaps = 30/153 (19%)
Query: 174 PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR--VREPGRAEGASR 231
P KP P G G + P A P PGP PP +R A+G
Sbjct: 1248 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRGDAGAKGEKG 1304
Query: 232 EPRL------------RSRAARPPP--APG-------PGALSRASRSRAAGRPGPGFHGG 270
P L + P P +PG PGA G PGP G
Sbjct: 1305 HPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1364
Query: 271 EKAAAPRAPGGGGGRN--PGALGRAAPPSRARQ 301
K A PGG G G G PP Q
Sbjct: 1365 AKGAT--GPGGPKGEKGVQGPPGHPGPPGEVIQ 1395
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 62.8 bits (151), Expect = 7e-10
Identities = 100/371 (26%), Positives = 122/371 (32%), Gaps = 83/371 (22%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRH-RKNRGPSAGTS 128
P G G+ G L P FP A G + G + P G+ P R RGP T
Sbjct: 798 PGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPR-GERGPTGPRGQRGPRGATG 856
Query: 129 QLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIF--QRPPVYLGNKPTP--- 183
+ G K T G P PP G+R + Q P + G K P
Sbjct: 857 KSGAKG--------TSGGDG------PHGPP-----GERGLPGPQGPNGFPGPKGPPGPP 897
Query: 184 --------PRQEGSFGGRPKSQPPLPQETAAP------------APQPGPTAPPARVREP 223
P Q G G + K+ PP P P PGP PP P
Sbjct: 898 GKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 957
Query: 224 GRA--EGASREPRLRSRAARPPPAP---GPGALS--RASRSRAAGRPGPGFHGGEKAAAP 276
G A EG +P PP AP GP L R GPG G E + P
Sbjct: 958 GTAGKEGTKGDP-------GPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGP 1010
Query: 277 RAPGGGGGRN-----------PGALGRAAPPSRARQDA----WGLSGCATVGLRRGDCDR 321
P G G PG G PP A + G G +G
Sbjct: 1011 PGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL 1070
Query: 322 AGSSQPPATSG-NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 380
G + PP +G +G++ ++ G +GE HGP PPG VG
Sbjct: 1071 PGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGE-----HGPPGPPG--PIGPVGQPGAAG 1123
Query: 381 GSGEGSRRGLQ 391
GE RG Q
Sbjct: 1124 ADGEPGARGPQ 1134
Score = 50.1 bits (118), Expect = 5e-06
Identities = 67/260 (25%), Positives = 88/260 (33%), Gaps = 45/260 (17%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPR------QEGSFGGRPKSQPPLPQETAAP 207
PP P + G + PV P PP Q+G+ G R + P + +P
Sbjct: 1250 PPGPKGPTGDDGPKG--NPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP--GQPGSP 1305
Query: 208 APQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP--GPGALSRASRSRAAGRPGP 265
P G PP + + G A E R + A+ P PG + AG+PGP
Sbjct: 1306 GPT-GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1364
Query: 266 -GFHGGEKAAAPRAPGGGGGRN-PGALGRAAPPSRARQDAW-GLSGCATVGLRRGDCDRA 322
G G PG G + PGA G+A PP GL G A +G
Sbjct: 1365 DGLRG--------LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLI 1416
Query: 323 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGS 382
G PP G +G GP PG++ E+G
Sbjct: 1417 GLIGPPGEQGE-------------------KGDRGLPGPQGSPGQK--GEMGIPGASGPI 1455
Query: 383 GEGSRRGLQLTPPPRRVHGA 402
G G GL P+ GA
Sbjct: 1456 GPGGPPGLPGPAGPKGAKGA 1475
Score = 45.1 bits (105), Expect = 1e-04
Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 46/252 (18%)
Query: 174 PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARVRE---PGR 225
P+ L P P ++G G G P PP P+ A P GP PP V PG
Sbjct: 1154 PIGLQGLPGPSGEKGETGDVGPMGPPG--PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1211
Query: 226 --AEGASREPRLRSRAARPPPAPGP-GALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGG 282
G S P ++ P GP G S G PGP P+ P G
Sbjct: 1212 KGEPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPGP--------PGPKGPTGD 1259
Query: 283 GG--RNPGALGRAAPPS-------RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN 333
G NPG +G P R + A G G + G G + PP G
Sbjct: 1260 DGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGK 1319
Query: 334 GERCRFCRRRRRRGG-GGEGE-------GTHATHGPASPPGRRHDEEVGAAVLRAGSGEG 385
R+GG G +G+ G GPA P G+ + G L G+
Sbjct: 1320 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPD--GLRGLPGSVGQQ 1377
Query: 386 SRRGL--QLTPP 395
R G Q PP
Sbjct: 1378 GRPGATGQAGPP 1389
Score = 43.1 bits (100), Expect = 6e-04
Identities = 75/298 (25%), Positives = 89/298 (29%), Gaps = 79/298 (26%)
Query: 163 EGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVRE 222
E G+ A+ + P + + P P G G PP Q P PG PP R
Sbjct: 384 EKGEPAVLE-PGMLVEGPPGPEGPAGLIG------PPGIQGNPGPVGDPGERGPPGRAGL 436
Query: 223 PGRAEGASREP--------RLRSRAARPPPAPG--------------------PGALSRA 254
PG ++GA P R S P PG +
Sbjct: 437 PG-SDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYT 495
Query: 255 SRSRAAGRPG-PGFHGGEKAAAPRAPGGGGGRN--PGALGRAA-------------PPSR 298
R G+PG PG G P+ P G G PG GR P +
Sbjct: 496 GRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVK 555
Query: 299 ARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE------- 351
+ GL G RGD G PP G RG GE
Sbjct: 556 GDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDG------------ERGDDGEIGPRGLP 603
Query: 352 GE-GTHATHGPASPPG-------RRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG 401
GE G GP PPG R D G GE G Q TP + + G
Sbjct: 604 GESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPG 661
Score = 42.0 bits (97), Expect = 0.001
Identities = 50/191 (26%), Positives = 62/191 (32%), Gaps = 40/191 (20%)
Query: 174 PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASR 231
PV L PP G G + + P + T + GP PP + G+ A GA
Sbjct: 1067 PVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADG 1126
Query: 232 EPRLR-------------SRAARPPPA-------PGP-GALSRASRSRAAGRPGPGFHGG 270
EP R +R PP PGP G G PGP
Sbjct: 1127 EPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGP----- 1181
Query: 271 EKAAAPRAPGGGGGRN-----PGALGRAAPPSR----ARQDAWGLSGCATVGLRRGDCDR 321
PR P G G + PG +G PP + G+ G V RG+
Sbjct: 1182 ---PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGE 1238
Query: 322 AGSSQPPATSG 332
G S P G
Sbjct: 1239 KGESGQPGEPG 1249
Score = 38.5 bits (88), Expect = 0.014
Identities = 93/357 (26%), Positives = 116/357 (32%), Gaps = 69/357 (19%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLP----HPGDHHPRHRKNRGPSA 125
P ++G G+ A G P P KG +G P LP H GD + GP
Sbjct: 531 PGKAGRRGRAGADGARGMPGDPGVKGDRGFDG--LPGLPGEKGHRGDTGAQGLP--GPPG 586
Query: 126 GTSQLGKKTQCRSLFLR----TKGLCALLLELPPRPPPNLQ-EGGQRAIF--QRPPVYLG 178
+ G + L +GL L P+ PP + G R + Q P LG
Sbjct: 587 EDGERGDDGEIGPRGLPGESGPRGL------LGPKGPPGIPGPPGVRGMDGPQGPKGSLG 640
Query: 179 --NKPTPPRQEGSFG--GRPKSQPPL-PQETAAPAPQPGPTAPPARVREPGRAEGASREP 233
+P PP Q+G+ G G P Q + P P +PG P PG G P
Sbjct: 641 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHP-GKEGPP 699
Query: 234 RLRSRAARPPPA-----PGPGALSRASRSRAA-------GRPG-PGFHGGEKAAAPRA-- 278
+ P PGP + R G G PGF G R
Sbjct: 700 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEV 759
Query: 279 --PGGGGGRNP-------GALGRAAPPS-RARQDAWGLSGCATVGLRRGDCDRAGSSQPP 328
PG G P G G PP + G+ G R+G G P
Sbjct: 760 GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFP 819
Query: 329 ATSGN-------------GERCRFCRRRRRRGGGGEGE----GTHATHGPASPPGRR 368
SG GER R +R G G+ GT GP PPG R
Sbjct: 820 GASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER 876
Score = 36.2 bits (82), Expect = 0.068
Identities = 78/303 (25%), Positives = 97/303 (32%), Gaps = 67/303 (22%)
Query: 181 PTPPRQEGSFGGRPKSQP-PLPQETAAPAPQPGPTAPPARVREPG-RAEGASREPR--LR 236
P PP ++G G + P LP E + P GP PP PG R + P+ L
Sbjct: 582 PGPPGEDGERGDDGEIGPRGLPGE-SGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLG 640
Query: 237 SRAARPPPA----------PGP-GALSRASRSRAAGRPG-PGFHGGE-------KAAAPR 277
+ PP PGP GA+ G+PG PG G + K P
Sbjct: 641 PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPG 700
Query: 278 APGGGGGRNP-GALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN--- 333
G G P G LG P G+ G + +G G P G+
Sbjct: 701 TKGNQGPSGPQGPLGYPGPR--------GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGV 752
Query: 334 -GERCRFCRRRRRRGGGGEG-EGTHATHGPASPPGRRHDE-------------------E 372
G+R R G EG +G G PPG ++
Sbjct: 753 KGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 812
Query: 373 VGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL----QRFGGGRNLKSNWMSTTRTPRRSGA 428
+G SGE RGL PR G QR G KS T SG
Sbjct: 813 LGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGT------SGG 866
Query: 429 SGP 431
GP
Sbjct: 867 DGP 869
Score = 30.0 bits (66), Expect = 4.9
Identities = 42/153 (27%), Positives = 47/153 (30%), Gaps = 30/153 (19%)
Query: 174 PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR--VREPGRAEGASR 231
P KP P G G + P A P PGP PP +R A+G
Sbjct: 1355 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRGDAGAKGEKG 1411
Query: 232 EPRL------------RSRAARPPP--APG-------PGALSRASRSRAAGRPGPGFHGG 270
P L + P P +PG PGA G PGP G
Sbjct: 1412 HPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1471
Query: 271 EKAAAPRAPGGGGGRN--PGALGRAAPPSRARQ 301
K A PGG G G G PP Q
Sbjct: 1472 AKGAT--GPGGPKGEKGVQGPPGHPGPPGEVIQ 1502
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 61.2 bits (147), Expect = 2e-09
Identities = 93/357 (26%), Positives = 120/357 (33%), Gaps = 67/357 (18%)
Query: 69 NPKRSGDMGKYHAHGH---LRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSA 125
NP G G A+G AP FP A+G +G PP P P ++G +
Sbjct: 387 NPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTG 446
Query: 126 GTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPR 185
+ G + + P P +EG + A + P L P PP
Sbjct: 447 AKGEPGP------------------VGVQGPPGPAGEEGKRGARGEPGPTGL---PGPPG 485
Query: 186 QEGSFGGR--PKSQPPL-PQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARP 242
+ G G R P + P+ A PGP P E GR G + P +
Sbjct: 486 ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR-PGEAGLPGAKGLTG-S 543
Query: 243 PPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN-------PGALGRAAP 295
P +PGP G PGP G P PG G R PG G A
Sbjct: 544 PGSPGPDG--------KTGPPGPAGQDGR----PGPPGPPGARGQAGVMGFPGPKGAAGE 591
Query: 296 PSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGT 355
P +A + G+ G G AG+ PP +G R G G
Sbjct: 592 PGKAGER--GVPGPPGAVGPAGKDGEAGAQGPPGPAGPA-------GERGEQGPAGSPGF 642
Query: 356 HATHGPASPPGR--RHDEEVGAAVLRAGSGEGSR--------RGLQLTPPPRRVHGA 402
GPA PPG + E+ L A G+R RG+Q P P GA
Sbjct: 643 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGA 699
Score = 58.9 bits (141), Expect = 1e-08
Identities = 68/241 (28%), Positives = 86/241 (35%), Gaps = 32/241 (13%)
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPT-----APPARVREPGRAEGASREPRL 235
P P G+ G + PP P A P PG A P R +G EP
Sbjct: 316 PGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGP 375
Query: 236 RSRAARPPPAPGPGALSRASRSRAAGRPG----PGFHGGEKAAAPRAPGGGGGRNPGALG 291
A PA PGA + A G PG PGF G + P+ PGG G +
Sbjct: 376 PGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE 435
Query: 292 RAAPPSRARQDAWGLSGCATVGLR-----RGDCDRAGSSQPPATSG----NGERCRFCRR 342
AP S+ A G G VG++ G+ + G+ P +G GE
Sbjct: 436 PGAPGSKGDTGAKGEPG--PVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGE------- 486
Query: 343 RRRRGGGGEG-EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG 401
R G G G G GP P G R G A + GE R G P + + G
Sbjct: 487 --RGGPGSRGFPGADGVAGPKGPAGERGSP--GPAGPKGSPGEAGRPGEAGLPGAKGLTG 542
Query: 402 A 402
+
Sbjct: 543 S 543
Score = 57.4 bits (137), Expect = 3e-08
Identities = 67/250 (26%), Positives = 81/250 (32%), Gaps = 40/250 (16%)
Query: 194 PKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP-GP---- 248
PK +P P E AP Q GP P PG A + A PP P GP
Sbjct: 285 PKGEPGSPGENGAPG-QMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343
Query: 249 ------GALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQD 302
GA A G GP GE A G NPGA G+ P ++
Sbjct: 344 GFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQ--PGAKGANG 401
Query: 303 AWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPA 362
A G++G RG G PP GN + G GE G GP
Sbjct: 402 APGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGE-PGPVGVQGPP 460
Query: 363 SPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRT 422
P +GE +RG + P P + G GG +
Sbjct: 461 GP-----------------AGEEGKRGARGEPGPTGLPGPPGERGG--------PGSRGF 495
Query: 423 PRRSGASGPK 432
P G +GPK
Sbjct: 496 PGADGVAGPK 505
Score = 50.8 bits (120), Expect = 3e-06
Identities = 66/271 (24%), Positives = 83/271 (30%), Gaps = 79/271 (29%)
Query: 181 PTPPR-QEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR-----------------VRE 222
P PR EG G R + PP P A PA PG P R
Sbjct: 357 PQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARG 416
Query: 223 PGRAEGASREPRLRSRAARPPPAPG-------------------PGALSRASRSRAAGRP 263
P +G P + + P APG PG + A G P
Sbjct: 417 PSGPQGPGGPPGPKGNSGEPG-APGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP 475
Query: 264 GP----------------GFHGGEKAAAPRAPGGGGGRNPGALG-RAAPPSRARQDAWGL 306
GP GF G + A P+ P G G +PG G + +P R GL
Sbjct: 476 GPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERG-SPGPAGPKGSPGEAGRPGEAGL 534
Query: 307 SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG 366
G + G G + PP +G R GP PPG
Sbjct: 535 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGR----------------------PGPPGPPG 572
Query: 367 RRHDEEV-GAAVLRAGSGEGSRRGLQLTPPP 396
R V G + +GE + G + P P
Sbjct: 573 ARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 603
Score = 50.1 bits (118), Expect = 5e-06
Identities = 57/205 (27%), Positives = 73/205 (35%), Gaps = 36/205 (17%)
Query: 181 PTPPRQEGSFGGR-PKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRA 239
P PP G G + P +P P + P+ GP PP + + G A +
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPR-GPPGPPGKNGDDGEA----------GKP 238
Query: 240 ARPPPAPGPGALSRASRSRAAGRPG----PGFHGGEKA------AAPRAPGGGGGRN--P 287
RP PG AG PG GF G + A A P+ G G N P
Sbjct: 239 GRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP 298
Query: 288 GALG-RAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRR 346
G +G R P R R A G +G RG+ G++ PP +G F +
Sbjct: 299 GQMGPRGLPGERGRPGAPGPAGA------RGNDGATGAAGPPGPTGPAGPPGFPGAVGAK 352
Query: 347 GGGGE-----GEGTHATHGPASPPG 366
G G EG G PPG
Sbjct: 353 GEAGPQGPRGSEGPQGVRGEPGPPG 377
Score = 47.4 bits (111), Expect = 3e-05
Identities = 84/337 (24%), Positives = 103/337 (30%), Gaps = 56/337 (16%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPH-----PGDHHPRHRKN-RGP 123
P G++G A G + P A G + GR PP P PG P ++ +GP
Sbjct: 850 PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGP 909
Query: 124 SAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTP 183
T G+ + PP PP E G P P P
Sbjct: 910 RGETGPAGRPGEVG----------------PPGPPGPAGEKGSPGA--DGPAGAPGTPGP 951
Query: 184 PRQEGSFG--GRPKSQ-----PPLPQETAAPAPQ-----PGPTAPPARVREPGRAEGASR 231
G G G P + P LP + P Q G PP + PG A
Sbjct: 952 QGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1011
Query: 232 EPRLRSRAARPPPA--PGPGALSRASRSRAAGRPG-PGFHGGEKAAAPRAPGGGGGRN-- 286
R + A P PGA + AG PG PG G P G G
Sbjct: 1012 SGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGP 1071
Query: 287 ---------PGALGRAAPPS-RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGER 336
GA G A P R + G G + RG G PP + G
Sbjct: 1072 AGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP 1131
Query: 337 CRFCRRRRRRGGGGEG-----EGTHATHGPASPPGRR 368
RG G +G + GP PPG R
Sbjct: 1132 SGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPR 1168
Score = 46.2 bits (108), Expect = 7e-05
Identities = 103/389 (26%), Positives = 130/389 (33%), Gaps = 55/389 (14%)
Query: 73 SGDMGKYHAHGHLRAPVFPVAKGSVPSEG----RATPPLPHP-GDHHPRHRKNRGPSAGT 127
+G G A G AP P ++G+ +G R LP P GD R + GP
Sbjct: 700 NGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGD-----RGDAGPKGAD 754
Query: 128 SQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQE 187
GK +GL + PP P + G+ P G P
Sbjct: 755 GSPGKDG--------VRGLTGPIG--PPGPAGAPGDKGESG----PSGPAG----PTGAR 796
Query: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRA--EGASREPRLRSRAARPPPA 245
G+ G R + PP P A P PG P EPG A +G + P A P P
Sbjct: 797 GAPGDRGEPGPPGPAGFAGP---PGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853
Query: 246 PGPGALSRASRSRAAGRPGP-GFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAW 304
GA +AG PG GF G P PG G A PP
Sbjct: 854 GNVGAPGAKGARGSAGPPGATGFPGAAGRVGP----------PGPSGNAGPP--GPPGPA 901
Query: 305 GLSGCATVGLRRGDCDRAGSSQPPATSG-NGERCRFCRRRRRRGGGGEG-EGTHATHGPA 362
G G G R G PP G GE+ G G +G G
Sbjct: 902 GKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVV 961
Query: 363 SPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFG----GGRNLKSNWMS 418
PG+R E G L SGE ++G R G + G G + +
Sbjct: 962 GLPGQR--GERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPG 1019
Query: 419 TTRTPRRSGASGPKMVADQTSGISRPPTA 447
+P R G+ G K +T G + PP A
Sbjct: 1020 AEGSPGRDGSPGAKGDRGET-GPAGPPGA 1047
Score = 40.0 bits (92), Expect = 0.005
Identities = 63/225 (28%), Positives = 77/225 (34%), Gaps = 61/225 (27%)
Query: 201 PQETAAPAPQPGPTAPPARVREPGR----------------AEGASREPRLR----SRAA 240
P+ P GP PP R PG+ G + P+L ++
Sbjct: 113 PKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKST 172
Query: 241 RPPPAPGP-GALSRASRSRAAGRPGP-GFHG-----GEKAAA----PRAPGGGGGRN--- 286
PGP G G PGP GF G GE A+ PR P G G+N
Sbjct: 173 GGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDD 232
Query: 287 -----PGALGRAAPPSRARQDAWGLSGCATV-GLR-----------RGDCDRAGSSQPPA 329
PG G PP Q A GL G A + G++ +GD AG P
Sbjct: 233 GEAGKPGRPGERGPP--GPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPG 290
Query: 330 TSG-NGERCRFCRR-----RRRRGGGGE--GEGTHATHGPASPPG 366
+ G NG + R R R G G G G A PPG
Sbjct: 291 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG 335
Score = 33.1 bits (74), Expect = 0.57
Identities = 38/140 (27%), Positives = 45/140 (32%), Gaps = 23/140 (16%)
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPG----RAEGASREPRLR 236
P P G G R ++ P P P GP P + G + + + R
Sbjct: 1054 PGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGF 1113
Query: 237 SRAARPPPAPG-PGALSRASRSRAAGRPGP-------GFHGGEKAAAPRAPGGGGGRN-- 286
S PP PG PG + S AG GP G G P P G GR
Sbjct: 1114 SGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGD 1173
Query: 287 ---------PGALGRAAPPS 297
PG G PPS
Sbjct: 1174 AGPVGPPGPPGPPGPPGPPS 1193
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 60.8 bits (146), Expect = 3e-09
Identities = 97/347 (27%), Positives = 113/347 (32%), Gaps = 82/347 (23%)
Query: 74 GDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRK-NRGPSAGTSQLGK 132
G+ G GH AP P A+G + EGR P PG R +K + GP LG
Sbjct: 657 GEQGAPGPRGHQGAPGPPGARGPIGPEGRDGP----PGLQGLRGKKGDMGPPGIPGLLG- 711
Query: 133 KTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGG 192
L+ PP PP G G P P + G F G
Sbjct: 712 ------------------LQGPPGPPGVPGPPGP-----------GGSPGLPGEIG-FPG 741
Query: 193 RPKSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGA 250
+P PP P GP PP EPG +G +P LR A PG
Sbjct: 742 KP--GPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGE 799
Query: 251 LSRASRSRAAGRPG----------------PGFHG--GEKA-AAPRAPGGGGG------- 284
A A G PG PG G GEK A P P G G
Sbjct: 800 KGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTP 859
Query: 285 --RNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRR 342
R PG G P + D GL G + R G+ G + PP G
Sbjct: 860 HPRMPGEQG----PKGEKGDP-GLPGEPGLQGRPGELGPQGPTGPPGAKGQ----EGAHG 910
Query: 343 RRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRG 389
G G GP+ PPG VGA LR G+ RG
Sbjct: 911 APGAAGNPGAPGHVGAPGPSGPPG-----SVGAPGLRGTPGKDGERG 952
Score = 59.3 bits (142), Expect = 7e-09
Identities = 91/334 (27%), Positives = 115/334 (34%), Gaps = 48/334 (14%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPP-------LPH-PGDHHPRHRKNR 121
P G G+ G P P +G + +G A P LP PG P R +
Sbjct: 761 PGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPG--FPGVRGEK 818
Query: 122 GPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKP 181
G +LG KG E P PP L G ++F P G +
Sbjct: 819 GDQGEKGELGLPG--------LKGDRGEKGEAGPAGPPGLP--GTTSLFTPHPRMPGEQG 868
Query: 182 TPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASREPRLRSRA 239
P+ E G P +P L PQ GPT PP + G A GA+ P
Sbjct: 869 --PKGEKGDPGLP-GEPGLQGRPGELGPQ-GPTGPPGAKGQEGAHGAPGAAGNPGAPGHV 924
Query: 240 ARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPR--APGGGGGR-NPGALGRAAPP 296
P P+ PG++ G PG GEK AA +PG G R +PGA G PP
Sbjct: 925 GAPGPSGPPGSVGAPG---LRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPP 981
Query: 297 SRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE-GEGT 355
+ + GL GS P G C R GG+ +G
Sbjct: 982 GKGKDGEPGL---------------RGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGD 1026
Query: 356 HATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRG 389
G PG R D +G A SG +G
Sbjct: 1027 RGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKG 1060
Score = 55.8 bits (133), Expect = 8e-08
Identities = 86/324 (26%), Positives = 110/324 (33%), Gaps = 78/324 (24%)
Query: 91 PVAKGSVPSEGRATPPLPHPG-----DHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKG 145
P KGS S G P P P D P + RGP G L + L K
Sbjct: 1056 PGDKGSPGSRG--LPGFPGPQGPAGRDGAPGNPGERGPP-GKPGLSSLLSPGDINLLAKD 1112
Query: 146 LCALLLELPPRPP--PNLQEGGQRAIFQRPPVYLGNKPTP--PRQEGSFGGRPKSQPP-L 200
+C + PP PP P L P + G+K P P +EG+ G + ++ PP L
Sbjct: 1113 VCN---DCPPGPPGLPGL------------PGFKGDKGVPGKPGREGTEGKKGEAGPPGL 1157
Query: 201 PQETAAPAPQ-----------------------PGPTAPPARVREPGR--AEGASREPRL 235
P PQ PG PP PG GA+ P +
Sbjct: 1158 PGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGI 1217
Query: 236 RSRAARP-PPAPG-----PGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNP-- 287
+ + PP P PG + G+PGP G KA P PG G R P
Sbjct: 1218 QGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPG-KAGEPGLPGPEGARGPPG 1276
Query: 288 --GALGRA-APPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRR 344
G G + AP R A GL G + + GD G P G
Sbjct: 1277 FKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRG------------ 1324
Query: 345 RRGGGGEGEGTHATHGPASPPGRR 368
G G+ GP+ PG++
Sbjct: 1325 -PPGKNGSPGSPGEPGPSGTPGQK 1347
Score = 53.9 bits (128), Expect = 3e-07
Identities = 81/297 (27%), Positives = 99/297 (33%), Gaps = 61/297 (20%)
Query: 181 PTPPRQEGSFGGRPK----SQPPLPQETAAPAPQ--PGPTAPPARVREPG----RAEGAS 230
P PP ++GS G R + +P LP E PQ PG PP RV PG R E +
Sbjct: 538 PGPPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGT 597
Query: 231 R-------------EPRLRSRAARPPPAPGPGALSRASRSRAAGRPG--------PGFHG 269
R +P + RP P+ G AG PG G G
Sbjct: 598 RGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKG 657
Query: 270 GEKAAAPR----APGGGGGRNP-GALGRAAPPS----RARQDAWGLSGCATVGLRRGDCD 320
+ A PR APG G R P G GR PP R ++ G G + +G
Sbjct: 658 EQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPG 717
Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGE----GTHATHGPASPPGRRHDEEVGAA 376
G PP G+ G GE G GP PPG+ D G
Sbjct: 718 PPGVPGPPGPGGS--------------PGLPGEIGFPGKPGPPGPTGPPGK--DGPNGPP 761
Query: 377 VLRAGSGEGSRRGLQLTPPPRRVHGALQRFG-GGRNLKSNWMSTTRTPRRSGASGPK 432
GE RG P + G + G GR + P G G K
Sbjct: 762 GPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEK 818
Score = 42.0 bits (97), Expect = 0.001
Identities = 89/360 (24%), Positives = 115/360 (31%), Gaps = 101/360 (28%)
Query: 73 SGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNR----------G 122
+GD G G A P +G +P + T P G PR + G
Sbjct: 1281 TGDSGAPGPRGESGAMGLPGQEG-LPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPG 1339
Query: 123 PSAGTSQLGKKTQCRSL----FLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP--PVY 176
PS Q G K + S FL +G PP P G+ + +P P +
Sbjct: 1340 PSGTPGQKGSKGENGSPGLPGFLGPRG--------PPGEPGEKGVPGKEGVPGKPGEPGF 1391
Query: 177 LGNKPTP--PRQEGSFGGRPK-SQPPLPQE---TAAPAPQP-----GPTAPPARVREPG- 224
G + P +G GG+ + P +P T PQ GP PP +PG
Sbjct: 1392 KGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGF 1451
Query: 225 ---RAEGASREPR---------------------------LRSRAARPPPAPGPGALSRA 254
R E S E ++S RP P PG
Sbjct: 1452 PGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLP 1511
Query: 255 SRSRAAGRPG-PGFHGGEKAAAPRAPGG--GGGRNPGALGRAAPPSRARQDAWGLSGCAT 311
R+ G PG PG G E + P P G G +PGA G
Sbjct: 1512 GRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPG-------------------- 1551
Query: 312 VGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATH----GPASPPGR 367
VGLR G PP G + + G +GE A H GP PPG+
Sbjct: 1552 VGLR-------GEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQ 1604
Score = 38.1 bits (87), Expect = 0.018
Identities = 97/387 (25%), Positives = 114/387 (29%), Gaps = 72/387 (18%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPP-LPHPGD---HHPRHRKNRGPSA 125
P G+ G G L P +G G A PP LP HPR +GP
Sbjct: 812 PGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKG 871
Query: 126 GTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEG-GQRAIFQRP--------PVY 176
G + GL EL P+ P GQ P P +
Sbjct: 872 EKGDPGLPGE--------PGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGH 923
Query: 177 LGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAP-QPGPTAPPARVREPGR----A 226
+G P P GS G G P ++ AA PGP P PG
Sbjct: 924 VG-APGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPG 982
Query: 227 EGASREPRLRSRAARPPPAPGPGALSRASRSR--------------AAGRPG-PGFHG-- 269
+G EP LR P P A + S A G PG PG G
Sbjct: 983 KGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDP 1042
Query: 270 GEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQ--- 326
G A P P G G R P Q G G RG + G S
Sbjct: 1043 GIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLS 1102
Query: 327 ---------------PPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDE 371
PP G F + G G EGT G A PPG
Sbjct: 1103 PGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGR-EGTEGKKGEAGPPGLPGPP 1161
Query: 372 EV----GAAVLRAGSGEGSRRGLQLTP 394
+ G+ R GE ++G Q P
Sbjct: 1162 GIAGPQGSQGERGADGEVGQKGDQGHP 1188
Score = 33.5 bits (75), Expect = 0.44
Identities = 66/260 (25%), Positives = 79/260 (30%), Gaps = 66/260 (25%)
Query: 163 EGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARV-- 220
E G+R + P KP Q+G G + P + PA GP P V
Sbjct: 600 EKGERGLDGFP-----GKPGDTGQQGRPGPSGVAGPQGEKGDVGPA---GPPGVPGSVVQ 651
Query: 221 REPGRAEGASREPRLRSRAARPPPAPG----------------------------PGALS 252
+E + E + PR A PP A G PG L
Sbjct: 652 QEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLG 711
Query: 253 RASRSRAAGRPGP-------------GFHGGEKAAAPRAPGGGGGRN--PGALGRAAPPS 297
G PGP GF G P P G G N PG G P
Sbjct: 712 LQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPG 771
Query: 298 RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE-GE--- 353
+D GL G + G+ AG +G F R +G GE GE
Sbjct: 772 ERGED--GLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGL 829
Query: 354 -------GTHATHGPASPPG 366
G GPA PPG
Sbjct: 830 PGLKGDRGEKGEAGPAGPPG 849
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 60.5 bits (145), Expect = 3e-09
Identities = 92/331 (27%), Positives = 106/331 (32%), Gaps = 40/331 (12%)
Query: 154 PPRPPPNLQEGGQRAIFQRP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAP--- 209
P PP GG + P P L P G G+P P A AP
Sbjct: 616 PQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGE-NGKPGEPGPKGDAGAPGAPGGK 674
Query: 210 ----QPGPTAPPARVREPGRAEGASRE-PRLRSRAARPPPAPG----PGALSRASRSRAA 260
PG PP PG GA P AA PP PG PG
Sbjct: 675 GDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGL 734
Query: 261 GRPGPGFHGGEKA--AAPRAPGGGGGRNPGALGRAAPPSRARQDA----WGLSGCATVGL 314
G PGP GE A PG G R P G PP A Q G G +
Sbjct: 735 GSPGPKGDKGEPGGPGADGVPGKDGPRGP--TGPIGPPGPAGQPGDKGEGGAPGLPGIAG 792
Query: 315 RRGDCDRAGSSQPPATSG-----------NGERCRFCRRRRRRGGGGEGEGTHATHGPAS 363
RG G + PP +G G+ R + GG G GPA
Sbjct: 793 PRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAG 852
Query: 364 PPGRRHDE-EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGG-GRNLKSNWMSTTR 421
PPG + + E G+ +G RGL P G G G++ T
Sbjct: 853 PPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG 912
Query: 422 TPRRSGASGPKMVADQ-----TSGISRPPTA 447
P G SGPK A Q + G PP A
Sbjct: 913 APGSPGVSGPKGDAGQPGEKGSPGAQGPPGA 943
Score = 57.0 bits (136), Expect = 4e-08
Identities = 88/324 (27%), Positives = 103/324 (31%), Gaps = 65/324 (20%)
Query: 155 PRPPPNLQEGGQRAIFQRPPVYLGNKPTPPR--QEGSFGGRPKSQPPLPQETAAPAPQPG 212
P PP GQ + P GN P + + G GG PP P PG
Sbjct: 563 PGPPGPSGPRGQPGVMGFPGPK-GNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPG 621
Query: 213 PTAPPARVREPG--------RAEGASREPRLRSRAARPPP-----APG-PGALSRASRSR 258
PT P + G G P + P P APG PG A
Sbjct: 622 PTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPG 681
Query: 259 AAGRPG----PGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGL 314
G PG PG GG A P P GG GA G PP A T GL
Sbjct: 682 ERGPPGLAGAPGLRGG---AGPPGPEGG----KGAAGPPGPPGAA----------GTPGL 724
Query: 315 RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG----EGTHATHGPASPP---GR 367
+ +R G P GE G G +G +G GP PP G+
Sbjct: 725 QGMPGERGGLGSPGPKGDKGE---------PGGPGADGVPGKDGPRGPTGPIGPPGPAGQ 775
Query: 368 RHDEEVGAAV----LRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTP 423
D+ G A + G RG P P GA G+N + P
Sbjct: 776 PGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGA-----PGQNGEPGGKGERGAP 830
Query: 424 RRSGASGPKMVADQT--SGISRPP 445
G GP VA SG + PP
Sbjct: 831 GEKGEGGPPGVAGPPGGSGPAGPP 854
Score = 56.6 bits (135), Expect = 5e-08
Identities = 80/280 (28%), Positives = 94/280 (33%), Gaps = 29/280 (10%)
Query: 173 PPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASRE 232
PP GN P PP GS G K PP P PG + P +PG
Sbjct: 883 PPGSNGN-PGPPGPSGSPG---KDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKG----- 933
Query: 233 PRLRSRAARPPPAPGPGALSRASRSRAAGRPG-PGFHGGEKAAAPRAPGGGGGRNPGALG 291
S A+ PP PG L A + A G G PG G + P+ G G+ PGA G
Sbjct: 934 ----SPGAQGPPG-APGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGK-PGANG 987
Query: 292 RAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE 351
+ R GL G A G GS P G+ + R G
Sbjct: 988 LSG--ERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGS-PGGKGDRGENGSPGAPG 1044
Query: 352 GEGTHATHGPASPPGRRHDE-EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFG--G 408
G GP P G+ D E G A G RG P P+ G G G
Sbjct: 1045 APGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRG---APGPQGPRGDKGETGERG 1101
Query: 409 GRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRPPTAG 448
+K + P GA G A Q I P AG
Sbjct: 1102 AAGIKGH----RGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137
Score = 50.1 bits (118), Expect = 5e-06
Identities = 57/217 (26%), Positives = 70/217 (32%), Gaps = 28/217 (12%)
Query: 195 KSQPPLPQETAAPAPQPGPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALS 252
K + LP E AP P GP P PG A GA R +P P PG
Sbjct: 284 KGENGLPGENGAPGPM-GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG 342
Query: 253 RASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPP-------SRARQDAWG 305
A G GP G A + G + GA G PP + G
Sbjct: 343 FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAG 402
Query: 306 LSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPP 365
+ G + RG AG++ P RGG GE G + G P
Sbjct: 403 IPGAPGLMGARGPPGPAGANGAPGL---------------RGGAGE-PGKNGAKGEPGPR 446
Query: 366 GRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGA 402
G R E G + GE + G P + GA
Sbjct: 447 GER--GEAGIPGVPGAKGEDGKDGSPGEPGANGLPGA 481
Score = 47.4 bits (111), Expect = 3e-05
Identities = 82/316 (25%), Positives = 100/316 (31%), Gaps = 62/316 (19%)
Query: 157 PPPNLQEGGQRAIFQRPPVYLGNKPT-PPRQEGSFGGRPKSQPP-LPQETAAPAPQPGPT 214
P P + G A+ +PP PT PP +G G + PP +P P PG
Sbjct: 75 PNPEIPFGECCAVCPQPPT----APTRPPNGQGPQGPKGDPGPPGIPGRNGDPGI-PGQP 129
Query: 215 APPARVREPGRAEGASREPRLRSR----------------AARPPPAPGPGALSRASRSR 258
P PG E P+ S A P PA PG S
Sbjct: 130 GSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSG 189
Query: 259 AAGRPG-PGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRG 317
G PG PG+ G P G G PGA+G + P + G SG R G
Sbjct: 190 HPGSPGSPGYQGPPGEPGQAGPSGPPGP-PGAIGPSGPAGKD-----GESG------RPG 237
Query: 318 DCDRAGSSQPPATSGNGERCRFCRRRRRRG----GGGEGE----------------GTHA 357
G PP G F + RG G +GE G
Sbjct: 238 RPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPG 297
Query: 358 THGPASPPGRRHDEEV-GAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNW 416
GP PG R + GAA R G G P P G F G K
Sbjct: 298 PMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG----FPGSPGAKGE- 352
Query: 417 MSTTRTPRRSGASGPK 432
+ +P +GA G +
Sbjct: 353 VGPAGSPGSNGAPGQR 368
Score = 46.6 bits (109), Expect = 5e-05
Identities = 79/301 (26%), Positives = 99/301 (32%), Gaps = 47/301 (15%)
Query: 91 PVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALL 150
P G S G+ PP P P GP Q G+K +
Sbjct: 890 PGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGA------------ 937
Query: 151 LELPPRPPPNLQEGGQRAI--FQRPPVYLGNKPTP-PRQEGSFGGRPKSQ-------PPL 200
+ PP P L G PP G + +P P+ G+P + PP
Sbjct: 938 -QGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPG 996
Query: 201 PQET---AAPAPQPGPTAPPARVREPGR-AEGASREPRLRSRAARPPPAPG----PGALS 252
PQ A A +PG P PGR + R + + P APG PG +
Sbjct: 997 PQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVG 1056
Query: 253 RASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATV 312
A +S G GP G APG G R GA G P R + G G A +
Sbjct: 1057 PAGKSGDRGESGPAGPAG-------APGPAGSR--GAPGPQGP--RGDKGETGERGAAGI 1105
Query: 313 GLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG-----EGTHATHGPASPPGR 367
RG G+ P +G RG G +GT GP PPG
Sbjct: 1106 KGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGP 1165
Query: 368 R 368
R
Sbjct: 1166 R 1166
Score = 46.2 bits (108), Expect = 7e-05
Identities = 72/254 (28%), Positives = 84/254 (33%), Gaps = 37/254 (14%)
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
P PP GS GG+ + PA PG PG A GA+ P LR A
Sbjct: 383 PGPPGINGSPGGKGEM---------GPAGIPGAPGLMGARGPPGPA-GANGAPGLRGGAG 432
Query: 241 RPPPAPGPGALSRASRSRAAGRPG-PGFHGGE-KAAAPRAPGGGGGRNPGALG-RAAPPS 297
P G AG PG PG G + K +P PG G PGA G R AP
Sbjct: 433 EPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANG--LPGAAGERGAPGF 490
Query: 298 RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHA 357
R G+ G +G G+ P G R G G G
Sbjct: 491 RGPAGPNGIPG------EKGPAGERGAPGPAGPRG-------AAGEPGRDGVPGGPGMRG 537
Query: 358 THGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWM 417
P SP G D + G GE R G PR G + G K N
Sbjct: 538 M--PGSPGGPGSDGKPGPP---GSQGESGRPGPPGPSGPRGQPGVM----GFPGPKGNDG 588
Query: 418 STTRTPRRSGASGP 431
+ + R G GP
Sbjct: 589 APGKNGERGGPGGP 602
Score = 43.5 bits (101), Expect = 4e-04
Identities = 60/211 (28%), Positives = 67/211 (31%), Gaps = 58/211 (27%)
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQ---PGPTAPPARVREPGRAEGASREPRLRS 237
P P G G R +S P P PA PGP P E G A ++
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAG----IKG 1107
Query: 238 RAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPS 297
P PG+ A + A G PGP A PR P G G PP
Sbjct: 1108 HRGFPGNPGAPGSPGPAGQQGAIGSPGP--------AGPRGPVGPSG----------PPG 1149
Query: 298 RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRRRGGGGEGEGTH 356
+ G SG G PP GN GER G EG H
Sbjct: 1150 KD-----GTSG------------HPGPIGPPGPRGNRGER------------GSEGSPGH 1180
Query: 357 -ATHGPASPPGRRHD--EEVGAAVLRAGSGE 384
GP PPG VGAA + GE
Sbjct: 1181 PGQPGPPGPPGAPGPCCGGVGAAAIAGIGGE 1211
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 60.1 bits (144), Expect = 4e-09
Identities = 79/279 (28%), Positives = 92/279 (32%), Gaps = 56/279 (20%)
Query: 146 LCALLLELPPRPPPNLQEGGQRAIFQRPPVYL--GNKPTPPRQ--EGSFGGRPKSQPPLP 201
LC PRP P PVY G K P G G P P LP
Sbjct: 1233 LCQASFTTQPRPEPC-------------PVYCPKGQKGEPGEMGLRGQVG--PPGDPGLP 1277
Query: 202 QETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAG 261
T A PGP PP A+G P R P A PG + G
Sbjct: 1278 GRTGA----PGPQGPPG----SATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPG 1329
Query: 262 RPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDR 321
PGP GE+ PR P G G +G P R+ G SG GD
Sbjct: 1330 LPGPRGDPGER--GPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGP 1387
Query: 322 AGSSQPPATSGNGERCRFCRRRRRRGGGGEGE--------------GTHATHGPASPPGR 367
G P T+ G++ R RG G GE G+ GP PPG+
Sbjct: 1388 RGPPGLPGTAMKGDK----GDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGK 1443
Query: 368 ---RHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL 403
+ D E GA L G +G PR GA+
Sbjct: 1444 KGEKGDSEDGAPGLPGQPGSPGEQG------PRGPPGAI 1476
Score = 53.9 bits (128), Expect = 3e-07
Identities = 89/372 (23%), Positives = 117/372 (31%), Gaps = 89/372 (23%)
Query: 91 PVAKGSVPSEGRATPPLPHPGDHHPRHRKNR----------GPSAGTSQLGKKTQCRSLF 140
P +G + GRA PP GD P K GP ++G+K
Sbjct: 1591 PGDRGPIGLTGRAGPP----GDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGD----- 1641
Query: 141 LRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP----PVYLGNKPTPPRQEGSFGGRPKS 196
E PP P + G+R + P PV P ++G G S
Sbjct: 1642 -----------EGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSS 1690
Query: 197 QPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA---------------- 240
P +PGP PP R+ + G EP R +
Sbjct: 1691 GPK------GDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGE 1744
Query: 241 ------RPPPAP--GPGALSRASRSRAAGRPG----PGFHGGEKAAAPRAPGGGGGR--N 286
R PP P PG A G PG G G AA P P G G+ +
Sbjct: 1745 RGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGD 1804
Query: 287 PGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRR 345
PG G P R Q G SG + + G+ + G + G+ GE R +
Sbjct: 1805 PGRDG--LPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDS 1862
Query: 346 RGGGGEG----------------EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRG 389
G EG +G GP PPG+ G + GE +G
Sbjct: 1863 GASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKG 1922
Query: 390 LQLTPPPRRVHG 401
Q P R + G
Sbjct: 1923 EQGLPGERGLRG 1934
Score = 49.7 bits (117), Expect = 6e-06
Identities = 83/316 (26%), Positives = 107/316 (33%), Gaps = 64/316 (20%)
Query: 69 NPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHH----------PRHR 118
+P R+G+ G A G +P P +G P E P PG P +
Sbjct: 1309 SPGRAGNPGTPGAPGLKGSPGLPGPRGD-PGERGPRGPKGEPGAPGQVIGGEGPGLPGRK 1367
Query: 119 KNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNL----QEGGQRAIFQRPP 174
+ GPS G L + PR PP L +G + +R P
Sbjct: 1368 GDPGPSGPPGPRGP-----------------LGDPGPRGPPGLPGTAMKGDKGDRGERGP 1410
Query: 175 VYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAE-GASREP 233
P P GG +P LP +P PQ GP PP + E G +E GA P
Sbjct: 1411 ------PGPGE-----GGIAPGEPGLPGLPGSPGPQ-GPVGPPGKKGEKGDSEDGAPGLP 1458
Query: 234 RLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKA-AAPRAPGGGGGRNPGALGR 292
P PGA+ G PGP GEK P P G G PG GR
Sbjct: 1459 GQPGSPGEQGPRGPPGAIGPKG---DRGFPGPLGEAGEKGERGPPGPAGSRGL-PGVAGR 1514
Query: 293 AAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG 352
P ++ + G +G R+G+ G PA G + +G G
Sbjct: 1515 --PGAKGPEGPPGPTG------RQGEKGEPGRPGDPAVVGPA----VAGPKGEKGDVGPA 1562
Query: 353 --EGTHATHGPASPPG 366
G G PPG
Sbjct: 1563 GPRGATGVQGERGPPG 1578
Score = 48.1 bits (113), Expect = 2e-05
Identities = 86/329 (26%), Positives = 104/329 (31%), Gaps = 69/329 (20%)
Query: 155 PRPPPNLQEGGQRAIFQRPPVYLGNK--PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
P P LQ G R PP +G P PP G G P PQ + +PG
Sbjct: 2163 PEGKPGLQ--GPRG----PPGPVGGHGDPGPPGAPGLAG------PAGPQGPSGLKGEPG 2210
Query: 213 PTAPPAR-VREPGRAEGASREPRLRSRAARPPPAPG-PGALSRASRSRAAGRPG------ 264
T PP R + P A G P S P +PG PG + + A GR G
Sbjct: 2211 ETGPPGRGLTGPTGAVGLPGPPG-PSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDG 2269
Query: 265 ----PGFHGGEKAAAPRAPGGGGGRN----------PGALGRAAPPSRARQDAWGLSGC- 309
PG G P P G G PGA G P D G G
Sbjct: 2270 DRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAK 2329
Query: 310 ATVGL-----RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASP 364
GL +G+ RAG P G + G G G + GP P
Sbjct: 2330 GDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGA-----PGPKGFKGDPGVGVPGSPGPPGP 2384
Query: 365 PGRRHDEEV----GAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
PG + D + GA + G+ RG P P G R L
Sbjct: 2385 PGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGP----------SGERGLAG------ 2428
Query: 421 RTPRRSGASGPKMVADQTSGISRPPTAGI 449
P R G GP + P +G+
Sbjct: 2429 -PPGREGIPGPLGPPGPPGSVGPPGASGL 2456
Score = 45.8 bits (107), Expect = 9e-05
Identities = 56/214 (26%), Positives = 66/214 (30%), Gaps = 34/214 (15%)
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARV--------------------RE 222
PP ++G G P LP + +P Q GP PP + R
Sbjct: 1440 PPGKKGEKGDSEDGAPGLPGQPGSPGEQ-GPRGPPGAIGPKGDRGFPGPLGEAGEKGERG 1498
Query: 223 PGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPR----- 277
P G+ P + R P PG R GRPG G A P+
Sbjct: 1499 PPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGD 1558
Query: 278 -APGGGGGRNPGALGRAAPPSRARQDAWGLSG----CATVGLRRGDCDRAGSSQPPATSG 332
P G G G G PP G G +GL G G S PP G
Sbjct: 1559 VGPAGPRGAT-GVQGERGPPGLVLPGDPGPKGDPGDRGPIGL-TGRAGPPGDSGPPGEKG 1616
Query: 333 NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG 366
+ R RG GE G GP PG
Sbjct: 1617 DPGRPGPPGPVGPRGRDGE-VGEKGDEGPPGDPG 1649
Score = 45.8 bits (107), Expect = 9e-05
Identities = 64/213 (30%), Positives = 73/213 (34%), Gaps = 34/213 (15%)
Query: 181 PTPPRQEGSFGGRPKSQPP-------LPQETAAPAPQ--PGPTAPPARVREPGRAEGASR 231
P P R+ G G + PP P E + PGP PP G A G R
Sbjct: 1972 PVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPP------GLALG-ER 2024
Query: 232 EPRLRSRAARPPPAPG-PGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGAL 290
P S A P PG PG RA AGRPG GEK G PG
Sbjct: 2025 GPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTP 2084
Query: 291 GRAAPPS---RARQDAWGLSG-CATVGLR--RGDCDRAGSSQPPATSG----NGERCRFC 340
G PP + GLSG GL+ +G+ G P G G+R
Sbjct: 2085 GPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPG 2144
Query: 341 RRRRRRGGGGEG-------EGTHATHGPASPPG 366
R + G G EG GP PPG
Sbjct: 2145 PRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPG 2177
Score = 39.7 bits (91), Expect = 0.006
Identities = 55/211 (26%), Positives = 64/211 (30%), Gaps = 33/211 (15%)
Query: 186 QEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRA-EGASREPRLRSRAARPPP 244
++G G + + PP T P PGP P V EPG G P L+ P
Sbjct: 2065 EKGERGEQGRDGPPGLPGTPGP---PGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPG- 2120
Query: 245 APGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAW 304
S + R PG G PR G G PG G A P +
Sbjct: 2121 -------SNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGL-PGERGMAGPEGKP----- 2167
Query: 305 GLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG-EGTHATHGPAS 363
GL G G G PP G G +G G G
Sbjct: 2168 GLQGPRG---PPGPVGGHGDPGPPGAPG-----------LAGPAGPQGPSGLKGEPGETG 2213
Query: 364 PPGRRHDEEVGAAVLRAGSGEGSRRGLQLTP 394
PPGR GA L G G Q +P
Sbjct: 2214 PPGRGLTGPTGAVGLPGPPGPSGLVGPQGSP 2244
Score = 32.3 bits (72), Expect = 0.98
Identities = 42/148 (28%), Positives = 50/148 (33%), Gaps = 37/148 (25%)
Query: 212 GPTAPPARVREPGRA--EGASREPRLRSRAARPPPAPGPGALSRASRSRAA-GRPGPGFH 268
G PP R PG A +G EP + ++ APG L R G+PGP
Sbjct: 2644 GEAGPPGR---PGLAGHKGEMGEPGVPGQSG----APGKEGLIGPKGDRGFDGQPGPKGD 2696
Query: 269 GGEK--------------------AAAPRAPGGGGGRNP----GALGRAAPPSRARQDAW 304
GEK A P PG G R P G G PP A
Sbjct: 2697 QGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAP 2756
Query: 305 GLSGCATVGLRRGDCDRAGSSQPPATSG 332
G+ G RG+ R G + P G
Sbjct: 2757 GVPGAPG---ERGEQGRPGPAGPRGEKG 2781
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 59.3 bits (142), Expect = 7e-09
Identities = 64/220 (29%), Positives = 83/220 (37%), Gaps = 28/220 (12%)
Query: 152 ELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQP 211
E P PP L G ++F P G + P+ E G P +P L PQ
Sbjct: 323 EAGPAGPPGLP--GTTSLFTPHPRMPGEQG--PKGEKGDPGLP-GEPGLQGRPGELGPQ- 376
Query: 212 GPTAPPARVREPGR--AEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHG 269
GPT PP + G A GA+ P P P+ PG++ G PG
Sbjct: 377 GPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPG---LRGTPGKDGER 433
Query: 270 GEKAAAPR--APGGGGGR-NPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQ 326
GEK AA +PG G R +PGA G PP + + GL G + G G+
Sbjct: 434 GEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPG 493
Query: 327 PPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG 366
P + G+ G G G GP+ PPG
Sbjct: 494 IPGSPGS--------------RGDPGIGVAGPPGPSGPPG 519
Score = 58.9 bits (141), Expect = 1e-08
Identities = 92/350 (26%), Positives = 120/350 (34%), Gaps = 81/350 (23%)
Query: 69 NPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPH--PGDHH-------PRHRK 119
+P G +G G P P ++G P G A PP P PGD P
Sbjct: 476 SPGLPGPLGTKGDRGAPGIPGSPGSRGD-PGIGVAGPPGPSGPPGDKGSPGSRGLPGFPG 534
Query: 120 NRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPP--PNLQEGGQRAIFQRPPVYL 177
+GP AG L + L K +C + PP PP P L P +
Sbjct: 535 PQGP-AGRDGLSSLLSPGDINLLAKDVCN---DCPPGPPGLPGL------------PGFK 578
Query: 178 GNKPTP--PRQEGSFGGRPKSQPP-LPQETAAPAPQ-----------------------P 211
G+K P P +EG+ G + ++ PP LP PQ P
Sbjct: 579 GDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVP 638
Query: 212 GPTAPPARVREPGR--AEGASREPRLRSRAARP-PPAPG-----PGALSRASRSRAAGRP 263
G PP PG GA+ P ++ + PP P PG + G+P
Sbjct: 639 GFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKP 698
Query: 264 GPGFHGGEKAAAPRAPGGGGGRNP----GALGRA-APPSRARQDAWGLSGCATVGLRRGD 318
GP G KA P PG G R P G G + AP R A GL G + + GD
Sbjct: 699 GPPGEPG-KAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGD 757
Query: 319 CDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRR 368
G P G G G+ GP+ PG++
Sbjct: 758 TGPTGPQGPQGPRG-------------PPGKNGSPGSPGEPGPSGTPGQK 794
Score = 47.8 bits (112), Expect = 2e-05
Identities = 97/374 (25%), Positives = 124/374 (33%), Gaps = 67/374 (17%)
Query: 72 RSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLG 131
R G+ G+ G AP FP +G +G L PG R K AG L
Sbjct: 278 RPGEKGEAGLPG---APGFPGVRGEKGDQGEKGE-LGLPGLKGDRGEKGEAGPAGPPGLP 333
Query: 132 KKTQCRSLFLRTKGLCALLLELPPRPPPNLQEG-----GQRAIFQRPPVYLGNKPTPPR- 185
T SLF +P P ++G G+ + RP PT P
Sbjct: 334 GTT---SLFTPHP-------RMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPG 383
Query: 186 ---QEGSFGGRPKS-QPPLPQETAAPAPQ--PGPTAPPARVREPGR-----AEGASRE-- 232
QEG+ G + P P AP P PG P PG+ +GA+ E
Sbjct: 384 AKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEG 443
Query: 233 ------PRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN 286
PR A P PG G + G PGP G++ A P PG G R
Sbjct: 444 SPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGA-PGIPGSPGSRG 502
Query: 287 PGALGRAAPPSRA----RQDAWGLSGCATVGLRRGDCDRAGSSQ---------------- 326
+G A PP + + + G G +G R G S
Sbjct: 503 DPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGLSSLLSPGDINLLAKDVCN 562
Query: 327 --PPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEV----GAAVLRA 380
PP G F + G G EGT G A PPG + G+ R
Sbjct: 563 DCPPGPPGLPGLPGFKGDKGVPGKPGR-EGTEGKKGEAGPPGLPGPPGIAGPQGSQGERG 621
Query: 381 GSGEGSRRGLQLTP 394
GE ++G Q P
Sbjct: 622 ADGEVGQKGDQGHP 635
Score = 42.0 bits (97), Expect = 0.001
Identities = 89/360 (24%), Positives = 115/360 (31%), Gaps = 101/360 (28%)
Query: 73 SGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNR----------G 122
+GD G G A P +G +P + T P G PR + G
Sbjct: 728 TGDSGAPGPRGESGAMGLPGQEG-LPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPG 786
Query: 123 PSAGTSQLGKKTQCRSL----FLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP--PVY 176
PS Q G K + S FL +G PP P G+ + +P P +
Sbjct: 787 PSGTPGQKGSKGENGSPGLPGFLGPRG--------PPGEPGEKGVPGKEGVPGKPGEPGF 838
Query: 177 LGNKPTP--PRQEGSFGGRPK-SQPPLPQE---TAAPAPQP-----GPTAPPARVREPG- 224
G + P +G GG+ + P +P T PQ GP PP +PG
Sbjct: 839 KGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGF 898
Query: 225 ---RAEGASREPR---------------------------LRSRAARPPPAPGPGALSRA 254
R E S E ++S RP P PG
Sbjct: 899 PGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLP 958
Query: 255 SRSRAAGRPG-PGFHGGEKAAAPRAPGG--GGGRNPGALGRAAPPSRARQDAWGLSGCAT 311
R+ G PG PG G E + P P G G +PGA G
Sbjct: 959 GRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPG-------------------- 998
Query: 312 VGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATH----GPASPPGR 367
VGLR G PP G + + G +GE A H GP PPG+
Sbjct: 999 VGLR-------GEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQ 1051
Score = 32.0 bits (71), Expect = 1.3
Identities = 79/313 (25%), Positives = 98/313 (31%), Gaps = 70/313 (22%)
Query: 153 LPPRPPP--NLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ 210
L PR P N+ +G Q A + L + P Q +P+ T
Sbjct: 171 LGPRTDPWENVDQGAQGACGRGNTSVLPSSVAP-------------QCSMPKGTGHEFSA 217
Query: 211 PGPTAPPARVREPGRAE---GASREPRLRSRAARPPPA-----PG-PGALSRASRSRAAG 261
T PA R RA A P L+ P PG PG AG
Sbjct: 218 ALGTQGPADQRADARASCILAAKTAPGLKQLNGEPGERGEDGLPGKPGLRGEIGEQGLAG 277
Query: 262 RPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDR 321
RPG GE A P APG G R + Q G G + RG+
Sbjct: 278 RPG---EKGE-AGLPGAPGFPGVRG----------EKGDQGEKGELGLPGLKGDRGEKGE 323
Query: 322 AGSSQPPATSGNGERCRFCRRRRRRGGGG-EGE----------------GTHATHGPASP 364
AG + PP G F R G G +GE G GP P
Sbjct: 324 AGPAGPPGLPGTTSL--FTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGP 381
Query: 365 PGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPR 424
PG + E GA +G G P P G++ G L+ TP
Sbjct: 382 PGAKGQE--GAHGAPGAAGNPGAPGHVGAPGPSGPPGSV----GAPGLRG-------TPG 428
Query: 425 RSGASGPKMVADQ 437
+ G G K A +
Sbjct: 429 KDGERGEKGAAGE 441
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 58.9 bits (141), Expect = 1e-08
Identities = 65/243 (26%), Positives = 89/243 (36%), Gaps = 45/243 (18%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
P PPP +G + + PP KP P +G G +P+ PP P + P PQ G
Sbjct: 98 PQGPPP---QGDKSRSPRSPP----GKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGN 148
Query: 213 -PTAPPARVREPGRAEGASREPRLRSRAARPPPA-----PGPGALSRASRSRAAGRP-GP 265
P PP PG+ +G + +SR++R PP P G G+P GP
Sbjct: 149 KPQGPPP----PGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 204
Query: 266 GFHGGEKAAAPRAPGGGGG------------RNPGALGRAAPPSRARQDAWGLSGCATVG 313
GG K P PG G R+P + PP Q G
Sbjct: 205 PPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQ---GPPPPPG 261
Query: 314 LRRGDCDRAGSS-QPPATSG--------NGERCRFCRRRRRRGGGGEGEGTHATHGPASP 364
+G + G+ Q P G G + R R + G +G + GP P
Sbjct: 262 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPP 321
Query: 365 PGR 367
PG+
Sbjct: 322 PGK 324
Score = 58.5 bits (140), Expect = 1e-08
Identities = 47/150 (31%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
P PPP +GG ++ R P KP P +G G +P+ PP P + P PQ G
Sbjct: 283 PQGPPP---QGGSKSRSSRSP---PGKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGN 334
Query: 213 -PTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGE 271
P PP PG+ +G + +SR+AR PP P + + G P P G
Sbjct: 335 KPQGPP----PPGKPQGPPPQGGSKSRSARSPPGK-PQGPPQQEGNNPQGPPPP---AGG 386
Query: 272 KAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
P+AP G + P + PSR Q
Sbjct: 387 NPQQPQAPPAGQPQGPPRPPQGGRPSRPPQ 416
Score = 58.2 bits (139), Expect = 2e-08
Identities = 51/157 (32%), Positives = 66/157 (42%), Gaps = 24/157 (15%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
P PPP Q A + PP KP P +G G +P+ PP P + P PQ G
Sbjct: 221 PQGPPPQGDNKSQSA--RSPP----GKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGN 272
Query: 213 -PTAPPARVREPGRAEGASREPRLRSRAARPPPA-----PGPGALSRASRSRAAGRP-GP 265
P PP PG+ +G + +SR++R PP P G G+P GP
Sbjct: 273 KPQGPPP----PGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 328
Query: 266 GFHGGEKAAAPRAPGGGGGRNP--GALGRAA--PPSR 298
GG K P PG G P G+ R+A PP +
Sbjct: 329 PPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGK 365
Score = 57.4 bits (137), Expect = 3e-08
Identities = 52/166 (31%), Positives = 64/166 (38%), Gaps = 33/166 (19%)
Query: 155 PRPPPNLQEGGQRAIFQRPPVYLGNKPT----------PPRQEGSFGGRPKSQPPLPQET 204
P PPP +G PP GNKP PP Q GS +S P PQ
Sbjct: 256 PPPPPGKPQG--------PPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQ-- 305
Query: 205 AAPAPQPG--PTAPPARVREPGRAEGASREPRLRSRAARPP-----PAPGPGALSRASRS 257
P PQ G P PP PG+ +G + + + PP P P G+ SR++RS
Sbjct: 306 -GPPPQGGNQPQGPPP---PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARS 361
Query: 258 RAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGA--LGRAAPPSRARQ 301
GP G P P GG + P A G+ P R Q
Sbjct: 362 PPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQ 407
Score = 49.7 bits (117), Expect = 6e-06
Identities = 60/225 (26%), Positives = 79/225 (35%), Gaps = 59/225 (26%)
Query: 148 ALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
+L+ P PP +GG + Q PP G PP Q G+ +P+ PP P + P
Sbjct: 30 SLIAGNPQGAPP---QGGNKP--QGPPSPPGKPQGPPPQGGN---QPQGPPPPPGKPQGP 81
Query: 208 APQPG--PTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGP 265
PQ G P PP PG+ +G PPP G SR+ RS GP
Sbjct: 82 PPQGGNKPQGPPP----PGKPQG-------------PPPQ---GDKSRSPRSPPGKPQGP 121
Query: 266 GFHGGEKAAAPRAPGG---GGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRA 322
GG + P P G G G + PP
Sbjct: 122 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP-------------------------P 156
Query: 323 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGR 367
G Q P G+ + R R + G +G + GP PPG+
Sbjct: 157 GKPQGPPPQGD-NKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGK 200
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 57.8 bits (138), Expect = 2e-08
Identities = 50/155 (32%), Positives = 66/155 (42%), Gaps = 19/155 (12%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGP 213
P RPPP +GG ++ PP G PP Q G+ RP PP P + P PQ G
Sbjct: 99 PERPPP---QGGNQSQGTPPPP--GKPERPPPQGGNQSHRP---PPPPGKPERPPPQGGN 150
Query: 214 TA--PPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGE 271
+ PP PG+ EG + +SR+AR PP P + ++ G P PG G
Sbjct: 151 QSQGPPPH---PGKPEGPPPQEGNKSRSARSPPGK-PQGPPQQEGNKPQGPPPPGKPQGP 206
Query: 272 KAAA-----PRAPGGGGGRNPGALGRAAPPSRARQ 301
A P+AP G + P + P R Q
Sbjct: 207 PPAGGNPQQPQAPPAGKPQGPPPPPQGGRPPRPAQ 241
Score = 41.2 bits (95), Expect = 0.002
Identities = 47/173 (27%), Positives = 66/173 (38%), Gaps = 40/173 (23%)
Query: 156 RPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLP------------QE 203
+P +GG + QRPP G PP Q GG PP P +
Sbjct: 35 KPEGRRPQGGNQP--QRPPPPPGKPQGPPPQ----GGNQSQGPPPPPGKPEGRPPQGGNQ 88
Query: 204 TAAPAPQPG-PTAPPAR--------VREPGRAEGASREPRLRSRAARPPPAPG-PGALSR 253
+ P P PG P PP + PG+ E P+ +++ RPPP PG P
Sbjct: 89 SQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPE--RPPPQGGNQSHRPPPPPGKPERPPP 146
Query: 254 ASRSRAAGRP-------GPGFHGGEKAAAPRAPGG---GGGRNPGALGRAAPP 296
+++ G P GP G K+ + R+P G G + G + PP
Sbjct: 147 QGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPP 199
Score = 40.0 bits (92), Expect = 0.005
Identities = 48/163 (29%), Positives = 58/163 (35%), Gaps = 44/163 (26%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEG--RATPPLPHPGDHHPRHRKNRGPSAGT 127
P+R G +H R P P P +G ++ P PHPG K GP
Sbjct: 120 PERPPPQGGNQSH---RPPPPPGKPERPPPQGGNQSQGPPPHPG-------KPEGPPP-- 167
Query: 128 SQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQE 187
Q G K++ R PP +G PP GNKP P
Sbjct: 168 -QEGNKSRSA------------------RSPPGKPQG--------PPQQEGNKPQGPPPP 200
Query: 188 GSFGGRPKS--QPPLPQETAAPAPQPGPTAPPARVREPGRAEG 228
G G P + P PQ A PQ GP PP R P A+G
Sbjct: 201 GKPQGPPPAGGNPQQPQAPPAGKPQ-GPPPPPQGGRPPRPAQG 242
Score = 35.0 bits (79), Expect = 0.15
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 24/89 (26%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFG------GRPKSQPPL---PQET 204
P PPP QEG + + PP G PP+QEG+ G+P+ PP PQ+
Sbjct: 162 PEGPPP--QEGNKSRSARSPP---GKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQP 216
Query: 205 AAPA----------PQPGPTAPPARVREP 223
AP PQ G PA+ ++P
Sbjct: 217 QAPPAGKPQGPPPPPQGGRPPRPAQGQQP 245
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 57.4 bits (137), Expect = 3e-08
Identities = 76/266 (28%), Positives = 97/266 (36%), Gaps = 42/266 (15%)
Query: 193 RPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASR------EPRLRSRAARPPPAP 246
RP ++PP P+ + P T A P + + SR PR +AR PAP
Sbjct: 80 RPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139
Query: 247 G-PGALSRASRSRAA-GRPGPGFHGGEKAAAPRAPGGGGGRNPGAL---GRAAPPSRARQ 301
P A +R + RAA G GPG G P GG+ P RAAP AR
Sbjct: 140 AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARP 199
Query: 302 -------------DAWGLSGCATVGLRRGDCDRAGSS----------QPPATSGNGERCR 338
G C T G G A SS QP G R R
Sbjct: 200 FRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVR 259
Query: 339 FCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRR 398
C RRR G G G PA PP RR+ + + L G G S + P R
Sbjct: 260 GCGGRRRSNGQGTQPGCRLL-SPA-PPRRRYRKPL---TLSFGGGVSSPTH-PVVAPRRH 313
Query: 399 VHGALQRFGGGRNLKSNWMSTTRTPR 424
++ RF G +++ + T P+
Sbjct: 314 FPRSVPRFPAG--FRTHSLGTAPKPK 337
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 57.4 bits (137), Expect = 3e-08
Identities = 76/266 (28%), Positives = 97/266 (36%), Gaps = 42/266 (15%)
Query: 193 RPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASR------EPRLRSRAARPPPAP 246
RP ++PP P+ + P T A P + + SR PR +AR PAP
Sbjct: 80 RPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139
Query: 247 G-PGALSRASRSRAA-GRPGPGFHGGEKAAAPRAPGGGGGRNPGAL---GRAAPPSRARQ 301
P A +R + RAA G GPG G P GG+ P RAAP AR
Sbjct: 140 AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARP 199
Query: 302 -------------DAWGLSGCATVGLRRGDCDRAGSS----------QPPATSGNGERCR 338
G C T G G A SS QP G R R
Sbjct: 200 FRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVR 259
Query: 339 FCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRR 398
C RRR G G G PA PP RR+ + + L G G S + P R
Sbjct: 260 GCGGRRRSNGQGTQPGCRLL-SPA-PPRRRYRKPL---TLSFGGGVSSPTH-PVVAPRRH 313
Query: 399 VHGALQRFGGGRNLKSNWMSTTRTPR 424
++ RF G +++ + T P+
Sbjct: 314 FPRSVPRFPAG--FRTHSLGTAPKPK 337
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 57.4 bits (137), Expect = 3e-08
Identities = 76/266 (28%), Positives = 97/266 (36%), Gaps = 42/266 (15%)
Query: 193 RPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASR------EPRLRSRAARPPPAP 246
RP ++PP P+ + P T A P + + SR PR +AR PAP
Sbjct: 80 RPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139
Query: 247 G-PGALSRASRSRAA-GRPGPGFHGGEKAAAPRAPGGGGGRNPGAL---GRAAPPSRARQ 301
P A +R + RAA G GPG G P GG+ P RAAP AR
Sbjct: 140 AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARP 199
Query: 302 -------------DAWGLSGCATVGLRRGDCDRAGSS----------QPPATSGNGERCR 338
G C T G G A SS QP G R R
Sbjct: 200 FRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVR 259
Query: 339 FCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRR 398
C RRR G G G PA PP RR+ + + L G G S + P R
Sbjct: 260 GCGGRRRSNGQGTQPGCRLL-SPA-PPRRRYRKPL---TLSFGGGVSSPTH-PVVAPRRH 313
Query: 399 VHGALQRFGGGRNLKSNWMSTTRTPR 424
++ RF G +++ + T P+
Sbjct: 314 FPRSVPRFPAG--FRTHSLGTAPKPK 337
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 57.0 bits (136), Expect = 4e-08
Identities = 64/218 (29%), Positives = 83/218 (38%), Gaps = 33/218 (15%)
Query: 123 PSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPT 182
PS G LG++T + G A P PP G QR Q PP L +P
Sbjct: 437 PSPGALPLGRQTS-----QQPAGPPAQQRPPPQGGPPQPGPGPQR---QGPP--LQQRPP 486
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRL----RSR 238
P Q+ G P + PLPQ P+P P P ++ P + +G P
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQR--LPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPP 544
Query: 239 AARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
AARPP +P P R AG P + + + AP G PG R PP
Sbjct: 545 AARPPASPSP--------QRQAGPPQA---TRQTSVSGPAPPKASGAPPGGQQRQGPP-- 591
Query: 299 ARQDAWGLSGCATVGLRRGDCDRAG--SSQPPATSGNG 334
Q G +G + G R G ++Q P SG G
Sbjct: 592 --QKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPG 627
Score = 42.0 bits (97), Expect = 0.001
Identities = 57/208 (27%), Positives = 73/208 (35%), Gaps = 29/208 (13%)
Query: 178 GNKPTPP-----RQEGSFGGRPKSQPPLPQETAAPAPQPGP--TAPPARVREPGRAE--- 227
G P+P RQ P +Q P + P P PGP PP + R P + +
Sbjct: 434 GQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHL 493
Query: 228 ---GASREPRLRSRAARPPPAPGPGALSRASRSRAAG---RPGPGFHGGEKAAAPRAPGG 281
G L R P AP A A ++ G RP G G AA P A
Sbjct: 494 SGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPA--- 550
Query: 282 GGGRNPGALGRAAPPSRARQDAWGLSGCA---TVGLRRGDCDRAGSSQ-PPATSGNGERC 337
+P +A PP RQ + +SG A G G R G Q PP +G +
Sbjct: 551 ----SPSPQRQAGPPQATRQTS--VSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQA 604
Query: 338 RFCRRRRRRGGGGEGEGTHATHGPASPP 365
R G + + GPA P
Sbjct: 605 SQAGPVPRTGPPTTQQPRPSGPGPAGRP 632
Score = 36.6 bits (83), Expect = 0.052
Identities = 46/189 (24%), Positives = 65/189 (34%), Gaps = 40/189 (21%)
Query: 87 APVFPVAKGSVPSEGRATPPLPHPGDHH--PRHRKNRGPS----AGTSQLGKKTQCRSLF 140
AP P ++ + P++G+ P G P R PS AG Q ++T
Sbjct: 514 APQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSG-- 571
Query: 141 LRTKGLCALLLELPPRPPP--NLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQP 198
P PP GGQ+ Q PP P RQ G P++ P
Sbjct: 572 --------------PAPPKASGAPPGGQQR--QGPPQKPPGPAGPTRQASQAGPVPRTGP 615
Query: 199 PLPQETAAPAPQPGPTAPPARVREPGR--------AEGASREPRLRSRAA------RPPP 244
P Q+ P P P ++P + A G P+L + P P
Sbjct: 616 PTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAFNLPEP 675
Query: 245 APGPGALSR 253
AP +LS+
Sbjct: 676 APPRPSLSQ 684
Score = 35.8 bits (81), Expect = 0.088
Identities = 54/223 (24%), Positives = 71/223 (31%), Gaps = 51/223 (22%)
Query: 91 PVAKGSVPSEG----RATPPLPH-PGDHHPRHRKNRGPSAGT-----------------S 128
P +G P G R PPL P +H GP AG+ S
Sbjct: 461 PPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPAS 520
Query: 129 QLGKKTQCRSLFLR--TKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQ 186
Q TQ + R G A PP P ++ G ++ V + P PP+
Sbjct: 521 QAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV---SGPAPPKA 577
Query: 187 EGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP 246
G+ G + Q P P PGP P + + G PR + P
Sbjct: 578 SGAPPGGQQRQGP-------PQKPPGPAGPTRQASQAGPV------PRTGPPTTQQPRPS 624
Query: 247 GPGALSRASRSRAAGRPGPGF--HGGEKAAAPRAPGGGGGRNP 287
GPG AGRP P + P GG +P
Sbjct: 625 GPG---------PAGRPKPQLAQKPSQDVPPPATAAAGGPPHP 658
Score = 30.8 bits (68), Expect = 2.8
Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 25/111 (22%)
Query: 200 LPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARP---PPAPGPG------- 249
LP +P P PP PG G RS P P AP PG
Sbjct: 17 LPNGYMTDLQRPQPPPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGF 76
Query: 250 --ALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
+LS A + A AAA + GGG G GR SR
Sbjct: 77 FSSLSNAVKQTTAA-----------AAATFSEQVGGG--SGGAGRGGAASR 114
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 57.0 bits (136), Expect = 4e-08
Identities = 64/218 (29%), Positives = 83/218 (38%), Gaps = 33/218 (15%)
Query: 123 PSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPT 182
PS G LG++T + G A P PP G QR Q PP L +P
Sbjct: 437 PSPGALPLGRQTS-----QQPAGPPAQQRPPPQGGPPQPGPGPQR---QGPP--LQQRPP 486
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRL----RSR 238
P Q+ G P + PLPQ P+P P P ++ P + +G P
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQR--LPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPP 544
Query: 239 AARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
AARPP +P P R AG P + + + AP G PG R PP
Sbjct: 545 AARPPASPSP--------QRQAGPPQA---TRQTSVSGPAPPKASGAPPGGQQRQGPP-- 591
Query: 299 ARQDAWGLSGCATVGLRRGDCDRAG--SSQPPATSGNG 334
Q G +G + G R G ++Q P SG G
Sbjct: 592 --QKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPG 627
Score = 42.0 bits (97), Expect = 0.001
Identities = 57/208 (27%), Positives = 73/208 (35%), Gaps = 29/208 (13%)
Query: 178 GNKPTPP-----RQEGSFGGRPKSQPPLPQETAAPAPQPGP--TAPPARVREPGRAE--- 227
G P+P RQ P +Q P + P P PGP PP + R P + +
Sbjct: 434 GQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHL 493
Query: 228 ---GASREPRLRSRAARPPPAPGPGALSRASRSRAAG---RPGPGFHGGEKAAAPRAPGG 281
G L R P AP A A ++ G RP G G AA P A
Sbjct: 494 SGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPA--- 550
Query: 282 GGGRNPGALGRAAPPSRARQDAWGLSGCA---TVGLRRGDCDRAGSSQ-PPATSGNGERC 337
+P +A PP RQ + +SG A G G R G Q PP +G +
Sbjct: 551 ----SPSPQRQAGPPQATRQTS--VSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQA 604
Query: 338 RFCRRRRRRGGGGEGEGTHATHGPASPP 365
R G + + GPA P
Sbjct: 605 SQAGPVPRTGPPTTQQPRPSGPGPAGRP 632
Score = 37.7 bits (86), Expect = 0.023
Identities = 42/174 (24%), Positives = 61/174 (35%), Gaps = 34/174 (19%)
Query: 87 APVFPVAKGSVPSEGRATPPLPHPGDHH--PRHRKNRGPS----AGTSQLGKKTQCRSLF 140
AP P ++ + P++G+ P G P R PS AG Q ++T
Sbjct: 514 APQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSG-- 571
Query: 141 LRTKGLCALLLELPPRPPP--NLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQP 198
P PP GGQ+ Q PP P RQ G P++ P
Sbjct: 572 --------------PAPPKASGAPPGGQQR--QGPPQKPPGPAGPTRQASQAGPVPRTGP 615
Query: 199 PLPQETAAPAPQPGPTAPPARVREPGR--------AEGASREPRLRSRAARPPP 244
P Q+ P P P ++P + A G P+L++ A+ P
Sbjct: 616 PTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASPAQAQP 669
Score = 36.2 bits (82), Expect = 0.068
Identities = 55/229 (24%), Positives = 72/229 (31%), Gaps = 49/229 (21%)
Query: 91 PVAKGSVPSEG----RATPPLPH-PGDHHPRHRKNRGPSAGT-----------------S 128
P +G P G R PPL P +H GP AG+ S
Sbjct: 461 PPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPAS 520
Query: 129 QLGKKTQCRSLFLR--TKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQ 186
Q TQ + R G A PP P ++ G ++ V + P PP+
Sbjct: 521 QAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV---SGPAPPKA 577
Query: 187 EGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAP 246
G+ G + Q P P PGP P + + G PR + P
Sbjct: 578 SGAPPGGQQRQGP-------PQKPPGPAGPTRQASQAGPV------PRTGPPTTQQPRPS 624
Query: 247 GPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAP 295
GPG AGRP P P G P +A+P
Sbjct: 625 GPG---------PAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASP 664
Score = 30.8 bits (68), Expect = 2.8
Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 25/111 (22%)
Query: 200 LPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARP---PPAPGPG------- 249
LP +P P PP PG G RS P P AP PG
Sbjct: 17 LPNGYMTDLQRPQPPPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGF 76
Query: 250 --ALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
+LS A + A AAA + GGG G GR SR
Sbjct: 77 FSSLSNAVKQTTAA-----------AAATFSEQVGGG--SGGAGRGGAASR 114
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 56.6 bits (135), Expect = 5e-08
Identities = 98/350 (28%), Positives = 118/350 (33%), Gaps = 73/350 (20%)
Query: 44 PAATTQQVREAADIIARWSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRA 103
P+A T AA IA + H S + L P+ P A+ ++
Sbjct: 890 PSAPTPSAGVAATTIAGFGHFHKALGGSLSS------SDSPLLTPLQPGARSPQAAQPSP 943
Query: 104 TPPLPHPGDHHPRH-----RKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPR-- 156
PP G P H +R PS+ QLG+ SL L T L E PPR
Sbjct: 944 APPGARGGLGLPEHFLPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLST--PETPPRQP 1001
Query: 157 PPPNLQEGGQRAIFQ---------RPPVYLGNKP-----TPPRQEGSFGG---RPKSQPP 199
PP+L G PP + P PPR GS G P S PP
Sbjct: 1002 EPPSLVAGASGGASPVGFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPP 1061
Query: 200 LPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRA 259
PQ PQ T P PGR +++ +L S + P G L RAS
Sbjct: 1062 PPQ-----VPQRRGTPP----LTPGR---LTQDLKLISASQPALPQDGAQTLRRAS---- 1105
Query: 260 AGRPGPGFHGGEKAAAPRAP-GGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGD 318
P G AA P P GGG G+ G PP R +G V L R
Sbjct: 1106 -----PHSSGESMAAFPLFPRAGGGSGGSGSSGGLGPPGR----PYGAIPGQHVTLPR-- 1154
Query: 319 CDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRR 368
+ S PP S G R G T GP PG R
Sbjct: 1155 -KTSSGSLPPPLSLFGARAT------------SSGGPPLTAGPQREPGAR 1191
Score = 53.1 bits (126), Expect = 5e-07
Identities = 73/281 (25%), Positives = 92/281 (32%), Gaps = 37/281 (13%)
Query: 172 RPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASR 231
R P P PP G G P+ P P + +P+ PG P G A G
Sbjct: 934 RSPQAAQPSPAPPGARGGLG-LPEHFLPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLS 992
Query: 232 EPRLRSRAARPPP--APGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGA 289
P R PP A G S + G PG G P AP G +
Sbjct: 993 TPETPPRQPEPPSLVAGASGGASPVGFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSL 1052
Query: 290 L---GRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQP------------PATSGNG 334
L + PP + Q + T G D +SQP + +G
Sbjct: 1053 LLPPASSPPPPQVPQRRG--TPPLTPGRLTQDLKLISASQPALPQDGAQTLRRASPHSSG 1110
Query: 335 ERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAV-LRAGSGEGSRRGLQLT 393
E R GGG G G + G PPGR + G V L + GS
Sbjct: 1111 ESMAAFPLFPRAGGGSGGSG---SSGGLGPPGRPYGAIPGQHVTLPRKTSSGS------L 1161
Query: 394 PPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMV 434
PPP + GA GG L T P+R + P+ V
Sbjct: 1162 PPPLSLFGARATSSGGPPL-------TAGPQREPGARPEPV 1195
Score = 33.5 bits (75), Expect = 0.44
Identities = 48/161 (29%), Positives = 60/161 (37%), Gaps = 28/161 (17%)
Query: 198 PPLPQETAAPAPQP-GPTAPPARVREPGRAEGAS--REPRLRSRAARPPPAPGP-----G 249
PP ++ PQ G A E EGA ++P RS RP P+P P G
Sbjct: 5 PPSMRKRLYSLPQQVGAKAWIMDEEEDAEEEGAGGRQDPSRRSIRLRPLPSPSPSAAAGG 64
Query: 250 ALSRASRSRAAGRPGPG--------------FHGGEKAAAPRAPGGGG---GRNPGALGR 292
SR+S AA GP F G + R G GG G + G L
Sbjct: 65 TESRSSALGAADSEGPARGAGKSSTNGDCRRFRGSLASLGSRGGGSGGTGSGSSHGHLHD 124
Query: 293 AAPPSR--ARQDAWGLSGCATVGLRRGDCDRAGSSQPPATS 331
+A R A DA GL + +R G+S PA S
Sbjct: 125 SAEERRLIAEGDASPGEDRTPPGL-AAEPERPGASAQPAAS 164
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 56.6 bits (135), Expect = 5e-08
Identities = 46/150 (30%), Positives = 63/150 (42%), Gaps = 19/150 (12%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
P PPP +G + Q PP KP P +G G +P+ PP P + P PQ G
Sbjct: 199 PQGPPP---QGDKSRSSQSPP----GKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGN 249
Query: 213 -PTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGE 271
P PP PG+ +G + +S++AR PP P + + G P P G
Sbjct: 250 KPQGPPP----PGKPQGPPAQGGSKSQSARSPPGK-PQGPPQQEGNNPQGPPPP---AGG 301
Query: 272 KAAAPRAPGGGGGRNPGALGRAAPPSRARQ 301
P+AP G + P + PSR Q
Sbjct: 302 NPQQPQAPPAGQPQGPPRPPQGGRPSRPPQ 331
Score = 55.8 bits (133), Expect = 8e-08
Identities = 82/312 (26%), Positives = 109/312 (34%), Gaps = 61/312 (19%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
P PPP +GG + PP KP P +G P+S P PQ P PQ G
Sbjct: 57 PQGPPP---QGGNKPQGPPPP----GKPQGPPPQGDKSRSPRSPPGKPQ---GPPPQGGN 106
Query: 213 -PTAPPARVREPGRAEGASREPRLRSRAARPPPAP-GP---GALSRASRSRAAGRPGPGF 267
P PP PG+ +G + R + PP P GP G SR+ RS GP
Sbjct: 107 QPQGPPP---PPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP 163
Query: 268 HGGEKAAAPRAPGG-------GGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCD 320
GG + P P G GG+ P + PP Q +GD
Sbjct: 164 QGGNQPQGPPPPPGKPQGPPPQGGKKP----QGPPPPGKPQGP----------PPQGDKS 209
Query: 321 RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG-PASPPGRRHDEEVGAAVLR 379
R+ S P G + GG + +G G P PP + ++ G
Sbjct: 210 RSSQSPPGKPQGPPPQ-----------GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 258
Query: 380 AGSG---EGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVAD 436
G +G + PP + G Q+ G N + P++ A A
Sbjct: 259 KPQGPPAQGGSKSQSARSPPGKPQGPPQQ--EGNNPQGPPPPAGGNPQQPQAP----PAG 312
Query: 437 QTSGISRPPTAG 448
Q G RPP G
Sbjct: 313 QPQGPPRPPQGG 324
Score = 47.4 bits (111), Expect = 3e-05
Identities = 72/317 (22%), Positives = 101/317 (31%), Gaps = 81/317 (25%)
Query: 171 QRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG--PTAPPARVREPGRAEG 228
+ P + P P +G G +P+ PP P + P PQ G P PP PG+ +G
Sbjct: 26 EESPSLIAGNPQGPSPQG--GNKPQGPPPPPGKPQGPPPQGGNKPQGPPP----PGKPQG 79
Query: 229 ASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGG------- 281
PPP G SR+ RS GP GG + P P G
Sbjct: 80 -------------PPPQ---GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 123
Query: 282 -GGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQ------------PP 328
GG R G P Q S + G +G + G+ PP
Sbjct: 124 QGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 183
Query: 329 ATSG-----------------NGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDE 371
G G++ R + + G +G + GP PPG+
Sbjct: 184 PQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQ-- 241
Query: 372 EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGP 431
G Q PPP + G + GG ++ + R+P P
Sbjct: 242 ---------GPPPQGGNKPQGPPPPGKPQGPPAQ-GGSKS------QSARSPPGKPQGPP 285
Query: 432 KMVADQTSGISRPPTAG 448
+ + G PP AG
Sbjct: 286 QQEGNNPQG--PPPPAG 300
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 56.2 bits (134), Expect = 6e-08
Identities = 47/152 (30%), Positives = 58/152 (38%), Gaps = 22/152 (14%)
Query: 156 RPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTA 215
+PPP Q+ + + Q P G PP + P + PP P P PT
Sbjct: 98 QPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSA----PPATPPTSGAPPGSGPGPTPTP 153
Query: 216 PPARVREPGRAEG----ASREPRLRSRAARPPP----APGPGALSRASRSRAAGRPGPGF 267
PPA P A +S P +A PPP PGPG + PGPG
Sbjct: 154 PPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQG-------PGPGG 206
Query: 268 -HGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
GG+ P+ GG G PG G PP R
Sbjct: 207 PKGGKMPGGPKPGGGPGLSTPG--GHPKPPHR 236
Score = 50.1 bits (118), Expect = 5e-06
Identities = 60/254 (23%), Positives = 77/254 (30%), Gaps = 30/254 (11%)
Query: 159 PNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQ--ETAAPAPQPGPTAP 216
P + G + PP + + PP+Q P PP PQ + P P P ++
Sbjct: 49 PGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSK 108
Query: 217 PARVREPGRAEGASREPRLRSRA--ARP-----PPAPGPGALSRASRSRAAGRPGPGFHG 269
P + PG A G P S A A P PP GPG + + PG
Sbjct: 109 PVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPT 168
Query: 270 GEKAAAPRAPGGGGGRNPGALGRAAP-------PSRARQDAWGLSGCATVGLRRGDCDRA 322
+ P P GG P P P + G G G
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPG 228
Query: 323 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGS 382
G +PP G RGG H H PPG G + +
Sbjct: 229 GHPKPPHRGGG----------EPRGGRQHHPPYHQQHHQGPPPG----GPGGRSEEKISD 274
Query: 383 GEGSRRGLQLTPPP 396
EG + L L P
Sbjct: 275 SEGFKANLSLLRRP 288
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 56.2 bits (134), Expect = 6e-08
Identities = 83/335 (24%), Positives = 113/335 (33%), Gaps = 62/335 (18%)
Query: 180 KPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAP-------PARVREPGRAEGASRE 232
+P+P + S G P + PL E +PQP T P P P R +
Sbjct: 349 RPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKS 408
Query: 233 PR---LRSRAARPPPAPGPGALSRASRSRAAG---RPGPGFHGGEKAAAPRAPGGGGGR- 285
P S + PP+P P +SR + S P PG H E +++P + GR
Sbjct: 409 PEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSH-REISSSPTSKNRSHGRA 467
Query: 286 --------NPG-ALGRAAPP------------------SRARQDAWGLSGCATVGLRRGD 318
P +GR+ P SR+R W S A R
Sbjct: 468 KRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRS 527
Query: 319 CDRAGSSQPPATSG--------NGERCRFCRRRRRRGGGGEGEGTHATHGPA-------S 363
R G S+ P G R R RR R G + PA
Sbjct: 528 PQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSR 587
Query: 364 PPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP----RRVHGALQRFGGGRN-LKSNWMS 418
P RR R+ S +RRG + P R ++R R+ + + S
Sbjct: 588 TPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRS 647
Query: 419 TTRTPRRSGASGPKMVADQTSGISRPPTAGIGTSR 453
+RTP R G S + A + SR P G SR
Sbjct: 648 RSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSR 682
Score = 50.1 bits (118), Expect = 5e-06
Identities = 82/317 (25%), Positives = 107/317 (33%), Gaps = 55/317 (17%)
Query: 155 PRPPPNLQEGGQ----------RAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQET 204
PR P Q G RA+ +R +K P EGS + P T
Sbjct: 1608 PRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRT 1667
Query: 205 AAPAPQPGPTAPPARVREPGRAEGASREPRL--------RSRAARPPPAPGPGALSRASR 256
A + P P + R P R + P L RSR+A P R R
Sbjct: 1668 ARRGSRSSPE-PKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRR 1726
Query: 257 SRAAGRPGPGFHGGEK-----AAAPRAPGGGG-GRNPGALGRAAPPSRARQDAWGLSGCA 310
S + P P A++PR GR+P R SR+R
Sbjct: 1727 SPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRRE-----K 1781
Query: 311 TVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHD 370
T RR D R+GSSQ + R R RRRRGG G + A + RR
Sbjct: 1782 TRTTRRRD--RSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRR-- 1837
Query: 371 EEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASG 430
RRG TPP R + R +S ++ T RRS +
Sbjct: 1838 ----------------RRGRSRTPPTSRKR-SRSRTSPAPWKRSRSRASPATHRRSRSRT 1880
Query: 431 P----KMVADQTSGISR 443
P + +TS +SR
Sbjct: 1881 PLISRRRSRSRTSPVSR 1897
Score = 42.0 bits (97), Expect = 0.001
Identities = 59/246 (23%), Positives = 83/246 (33%), Gaps = 16/246 (6%)
Query: 192 GRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGAL 251
GR +S+ P + + P +R R P R SR P R R+ PA
Sbjct: 571 GRSRSRTPARRGRSRSRT---PARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 627
Query: 252 SRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGC-A 310
R R+ R G ++ P G R P GR+ + AR+ S A
Sbjct: 628 RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPA 687
Query: 311 TVGLRRGDCDRAGSSQPPATSGNG-ERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRH 369
G R R G S+ + G R +RR R G E + T +R
Sbjct: 688 RRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRT-------SQRR 740
Query: 370 DEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL---QRFGGGRNLKSNWMSTTRTPRRS 426
+ ++ S SRR L+ P + L + G T RS
Sbjct: 741 SRSNSSPEMKK-SRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRS 799
Query: 427 GASGPK 432
G+S PK
Sbjct: 800 GSSQPK 805
Score = 35.4 bits (80), Expect = 0.12
Identities = 67/291 (23%), Positives = 101/291 (34%), Gaps = 33/291 (11%)
Query: 178 GNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRS 237
G P+P G P S+P P++P ++P + +
Sbjct: 293 GRSPSPASGRRGEGDAPFSEP-------GTTSTQRPSSPETATKQPSSPYEDKDKDKKEK 345
Query: 238 RAARPPPAPGPGALSRASRSRAAGRPGPGF---HGGEKAAAPRAPGGGGGRNPGA----- 289
A RP P+P R+S P P HGG P NP +
Sbjct: 346 SATRPSPSP-----ERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPT 400
Query: 290 LGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQP------PATSGNGERCRFCRRR 343
R+ P S + S + + R SS P PA + E +
Sbjct: 401 RDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSK 460
Query: 344 RRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPR-RVHGA 402
R G + + +H +H P+ GR A R+ S ++RG + P+ R +
Sbjct: 461 NRSHGRAKRDKSH-SHTPSRRMGRSRSPAT-AKRGRSRSRTPTKRGHSRSRSPQWRRSRS 518
Query: 403 LQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRPPTAGIGTSR 453
QR+G R+ + S R+P+R G S + Q G SR G SR
Sbjct: 519 AQRWGRSRSPQRRGRS--RSPQRPGWSRSRNT--QRRGRSRSARRGRSHSR 565
Score = 35.0 bits (79), Expect = 0.15
Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 18/164 (10%)
Query: 93 AKGSVPSEGRA-TPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLL 151
++ P GR+ + L G H R + RG S +S+ +K + R+ R++ + +
Sbjct: 692 SRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSE--RKNKSRTSQRRSRSNSSPEM 749
Query: 152 ELP------------PRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPP 199
+ PR + +R++ P TPPR+ S +PK++
Sbjct: 750 KKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSR 809
Query: 200 LPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPP 243
P + + P P + + P R +S P + ++ PP
Sbjct: 810 TPPRRSRSSSSP---PPKQKSKTPSRQSHSSSSPHPKVKSGTPP 850
Score = 35.0 bits (79), Expect = 0.15
Identities = 44/177 (24%), Positives = 62/177 (35%), Gaps = 19/177 (10%)
Query: 91 PVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALL 150
P K +V EGR PP P P R + S+ +S + S + +
Sbjct: 2584 PAPKEAV-REGR--PPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2640
Query: 151 LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRP-------KSQPPLPQE 203
P+ + G +A+ P KP P + +P +S P E
Sbjct: 2641 SSSSSSSSPSPAKPGPQAL---PKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVE 2697
Query: 204 TAAPAPQPGPTAPPARVREPGRAEGA---SREPRLRSRAARPPPAPGPGALSRASRS 257
P+PQP P + E G G SR P + R P P P R+SRS
Sbjct: 2698 RRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRP---MRHRSSRS 2751
Score = 34.3 bits (77), Expect = 0.26
Identities = 76/355 (21%), Positives = 117/355 (32%), Gaps = 57/355 (16%)
Query: 60 RWSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHR- 118
R S S PK+ +H +P V G+ P +G T P + P+ R
Sbjct: 813 RRSRSSSSPPPKQKSKTPSRQSHSS-SSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRS 871
Query: 119 ----------KNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRA 168
K+R PS + + +S PPR P+ Q
Sbjct: 872 CFESSPDPELKSRTPSRHSCSGSSPPRVKS-------------STPPRQSPSRSSSPQPK 918
Query: 169 IFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVRE----PG 224
+ PRQ G S P + T+ P+ + P E P
Sbjct: 919 V---------KAIISPRQRSHSGS---SSPSPSRVTSRTTPRRSRSVSPCSNVESRLLPR 966
Query: 225 RAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGG- 283
+ S P + + PP G++S + +A PGP G K+ P+
Sbjct: 967 YSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQTPPGPSL-SGSKSPCPQEKSKDSL 1025
Query: 284 -GRNPGALGRAA------PPSRARQDAWGLSGCATVGLRRGDCD-RAGSSQPPATSGNGE 335
PG+L A PP + +G+S G + D R+ +S P + E
Sbjct: 1026 VQSCPGSLSLCAGVKSSTPPG---ESYFGVSSLQLKGQSQTSPDHRSDTSSPEVRQSHSE 1082
Query: 336 RCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHD--EEVGAAVLRAG-SGEGSR 387
+ + GG + AS R D E + +L++G S E SR
Sbjct: 1083 SPSLQSKSQTSPKGGRSRSSSPVTELASRSPIRQDRGEFSASPMLKSGMSPEQSR 1137
Score = 32.7 bits (73), Expect = 0.75
Identities = 54/245 (22%), Positives = 79/245 (32%), Gaps = 25/245 (10%)
Query: 205 AAPAPQPGPTAPPARVRE-PGRAEGASREPRLRSR-AARPPPAPGPGALSRASRSRAAGR 262
++P P+ PP R R + + SR P RSR ++ PPP SR S S ++
Sbjct: 782 SSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPH 841
Query: 263 PGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRA 322
P K + P G +P A ++ P R+ + S + R
Sbjct: 842 P--------KVKSGTPPRQGSITSPQANEQSVTPQ--RRSCFESSPDPELKSRTPSRHSC 891
Query: 323 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGS 382
S PP + R+ SP R H + R S
Sbjct: 892 SGSSPPRVKSS--------TPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTS 943
Query: 383 GEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASG-----PKMVADQ 437
RR ++P L R+ + + TP R SG PK+ A
Sbjct: 944 RTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQT 1003
Query: 438 TSGIS 442
G S
Sbjct: 1004 PPGPS 1008
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 55.8 bits (133), Expect = 8e-08
Identities = 47/153 (30%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 155 PRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG-P 213
P PPP +G PP GNKP P G +P+ PP ++ +P PG P
Sbjct: 50 PPPPPGKPQG--------PPPQGGNKPQGPPPPG----KPQGPPPQGDKSRSPRSPPGKP 97
Query: 214 TAPPARVREP-GRAEGASREPRLRSRAARP--PPAPGPGALSRASRSRAAGRPGPGFHGG 270
PP + +P G +P+ +P PPA G G+ S+++RS GP G
Sbjct: 98 QGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQG-GSKSQSARSPPGKPQGPPQQEG 156
Query: 271 EKAAAPRAPGGGGGRNPGA--LGRAAPPSRARQ 301
P P GG + P A G+ P R Q
Sbjct: 157 NNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQ 189
Score = 48.1 bits (113), Expect = 2e-05
Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 25/145 (17%)
Query: 171 QRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG--PTAPPARVREPGRAEG 228
+ P + P P +G G +P+ PP P + P PQ G P PP PG+ +G
Sbjct: 26 EESPSLIAGNPQGPSPQG--GNKPQGPPPPPGKPQGPPPQGGNKPQGPP----PPGKPQG 79
Query: 229 ------ASREPRLRSRAARPPP-------APGPGALSRASRSRAAGRP-GPGFHGGEKAA 274
SR PR + PP P P ++ G+P GP GG K+
Sbjct: 80 PPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQ 139
Query: 275 APRAPGG---GGGRNPGALGRAAPP 296
+ R+P G G + G + PP
Sbjct: 140 SARSPPGKPQGPPQQEGNNPQGPPP 164
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 54.7 bits (130), Expect = 2e-07
Identities = 75/269 (27%), Positives = 91/269 (33%), Gaps = 62/269 (23%)
Query: 155 PRPPPNLQEGGQRAIFQRP--PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAP--- 209
P PP + GQ P P+ L +P PP + G G P P P + P
Sbjct: 51 PVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRG--PPGPPGFPGKPGMGKPGLH 108
Query: 210 -QPGPTAPPA--------------RVREPGRAEGASREPRLRSRAAR-----PPPAPGPG 249
QPGP PP +V PG+ G EP +R PP PGP
Sbjct: 109 GQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQP-GLRGEPGIRGDQGLRGPPGPPGLPGPS 167
Query: 250 ALSRASRSRAAGRPG-PGFHG-----GE----------------KAAAPRAPGGGGGRNP 287
++ + A G PG PGF G GE + P APG GG P
Sbjct: 168 GITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGA--P 225
Query: 288 GALGRAAPPSRARQDAWGL---------SGCATVGLRRGDCDRAGSSQPPATSGNGERCR 338
G G P + GL SG V RG+ G PP G G
Sbjct: 226 GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA 285
Query: 339 FCRRRRRRGGGGEGE-GTHATHGPASPPG 366
+ G +GE GT G P G
Sbjct: 286 AGLPGPQGPSGAKGEPGTRGPPGLIGPTG 314
Score = 40.8 bits (94), Expect = 0.003
Identities = 76/278 (27%), Positives = 88/278 (31%), Gaps = 57/278 (20%)
Query: 130 LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGS 189
LG T SL L L L+L PR GG Y K P Q+G
Sbjct: 2 LGTLTPLSSLLLL---LLVLVLGCGPRASSGGGAGGAAG-------YAPVKYIQPMQKGP 51
Query: 190 FGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPG 249
G PP + P P P EPG PP PGP
Sbjct: 52 VG------PPFREGKGQYLEMPLPLLPMDLKGEPG-----------------PPGKPGPR 88
Query: 250 ALSRASRSRAAGRPG---PGFHGGEKAAAPRAPGG---GGGRNPGALGRAAPPSRARQDA 303
G+PG PG HG A P PG G PG G+ PP +
Sbjct: 89 G--PPGPPGFPGKPGMGKPGLHGQPGPAGP--PGFSRMGKAGPPGLPGKVGPPGQP---- 140
Query: 304 WGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGG----EGE-GTHAT 358
GL G + RGD G PP G + +G G +GE G
Sbjct: 141 -GLRGEPGI---RGDQGLRGPPGPPGLPGPSG-ITIPGKPGAQGVPGPPGFQGEPGPQGE 195
Query: 359 HGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 396
GP G + D VG L G+G G P P
Sbjct: 196 PGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGP 233
Score = 39.7 bits (91), Expect = 0.006
Identities = 58/217 (26%), Positives = 72/217 (33%), Gaps = 28/217 (12%)
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARP 242
PP GS G + PP P+ A P PG +R G + +P + P
Sbjct: 359 PPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPG----IRGDQGPSGLAGKPGVPGERGLP 414
Query: 243 PPAPGPGALSRASRSRAAGRP-GPGFHG--GEKA--AAPRAPG-GGGGRNPGALGRAAPP 296
PG GRP GPG G G+K P PG G PG G A P
Sbjct: 415 GAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPI 474
Query: 297 S----RARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEG 352
+ GL G G R G+ AG + PP G+ G
Sbjct: 475 GPQGLPGLKGEPGLPGPPGEG-RAGEPGTAGPTGPPGVPGS-------------PGITGP 520
Query: 353 EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRG 389
G GP PG + + L G EG+ G
Sbjct: 521 PGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLG 557
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 54.7 bits (130), Expect = 2e-07
Identities = 78/282 (27%), Positives = 100/282 (35%), Gaps = 39/282 (13%)
Query: 157 PPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFG--GRPKSQPPLPQETAAPAPQ---- 210
PP + Q+ +A+ Q+ + + P P G G G P P L E A PQ
Sbjct: 457 PPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLP-GHPGLKGEEGAEGPQGPRG 515
Query: 211 -PGPTAPPARVREPGR--AEGASREPRLRSRAARP--PPAPG-PGALSRASRSRAAGRPG 264
GP PP RV + GR A+GA P PG PG + G+PG
Sbjct: 516 LQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPG 575
Query: 265 PGFHGGEKAA-APRAPGGGGGRNPGALG----RAAPPSRARQDAWGLSGCATVGLRRGDC 319
P GE+ A P P G G PG G R +P R G+ G +G+
Sbjct: 576 PPGEDGERGAEGPPGPTGQAG-EPGPRGLLGPRGSPGPTGRPGVTGIDGAPGA---KGNV 631
Query: 320 DRAGSSQPPATSGN-------GERCRFCRRRRRRGGGGEG-EGTHATHGPASPPGRRHDE 371
G PP GN G + + G G G + GP PG H+
Sbjct: 632 GPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPG--HEG 689
Query: 372 EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLK 413
G + G G P PR V G G R L+
Sbjct: 690 PTGEKGAQGPPGSAGPPGY---PGPRGVKGT----SGNRGLQ 724
Score = 48.1 bits (113), Expect = 2e-05
Identities = 101/405 (24%), Positives = 130/405 (32%), Gaps = 58/405 (14%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
P GD+G+ A G P +G G PP D P H RG Q
Sbjct: 850 PGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQ 909
Query: 130 LGKKTQCRSLFLRTK-GLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEG 188
G L + K G L E P PP PP G P EG
Sbjct: 910 TGPPGPAGVLGPQGKTGEVGPLGERGPPGPPG------------PPGEQG----LPGLEG 953
Query: 189 SFGGRPKSQPPLPQETAAPA------------PQPGPTAPPARVREPGRAEGASREPRLR 236
G + + PP P PA PGPT PG GA+ P
Sbjct: 954 REGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPV-GANGSP--- 1009
Query: 237 SRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRN--PGALGRAA 294
R P P G + +S + G GP G + + R P G G++ PG LG
Sbjct: 1010 --GERGPLGPA-GGIGLPGQSGSEGPVGPA--GKKGSRGERGPPGPTGKDGIPGPLGPLG 1064
Query: 295 PPSRARQDA-WGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGE 353
PP A G G +G G + PP G R G +
Sbjct: 1065 PPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPG-------IRGPAGHPGPPGAD 1117
Query: 354 GTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLK 413
G GP G++ D+ V R G GLQ P P G + G ++
Sbjct: 1118 GAQGRRGPPGLFGQKGDDGV-----RGFVGVIGPPGLQGLPGPPGEKGEVGDVG---SMG 1169
Query: 414 SNWMSTTRTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGD 458
+ R P+ G +G + G+ +P G R GD
Sbjct: 1170 PHGAPGPRGPQ--GPTGSEGTPGLPGGVGQPGAVGEKGERGDAGD 1212
Score = 43.9 bits (102), Expect = 3e-04
Identities = 89/357 (24%), Positives = 113/357 (31%), Gaps = 70/357 (19%)
Query: 73 SGDMGKYHAHGHLRAPVFPVAKGSVPSEG-RATPPLPHP-GDHHPRHRKNRGPSAGTSQL 130
SG+ G G FP KG V +G + P P P G+ P GP Q
Sbjct: 718 SGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPE-----GPKGQAGQA 772
Query: 131 GKKTQCRSLFLRTKGLCALLLELPPRPPPN-----------LQEGGQRAIFQRPPVYLGN 179
G++ S + K L P RP P + E G+ +P L
Sbjct: 773 GEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPG--LEG 830
Query: 180 KPTPPRQEGSFG-----GRPKSQ--------PPLPQETAAPAPQ-----PGPTAPPARVR 221
+ PP G G G+P + P +P E P Q PGP PP
Sbjct: 831 ERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQG 890
Query: 222 EPGRAEGASREPRLRSRAARPPPAP----GP-------GALSRASRSRAAGRPG----PG 266
+ GR + L + PP P GP G L G PG PG
Sbjct: 891 KDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPG 950
Query: 267 FHGGEKAAAPRAPGGGGGRN--------PGALGRAAPPS----RARQDAWGLSGCATVGL 314
G E A P G G+ PG G P + + G G
Sbjct: 951 LEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPG 1010
Query: 315 RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPG 366
RG AG P SG+ ++ RG G +G GP PPG
Sbjct: 1011 ERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPG 1067
Score = 40.0 bits (92), Expect = 0.005
Identities = 51/196 (26%), Positives = 65/196 (33%), Gaps = 27/196 (13%)
Query: 184 PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARV--REPGRAEGASREPRLRS--RA 239
P +GS G + + PP PA PGP R P G + +R
Sbjct: 1084 PGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGV 1143
Query: 240 ARPPPAPG-PGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGG--------GGGRNPGAL 290
PP G PG G GP HG P+ P G GG PGA+
Sbjct: 1144 IGPPGLQGLPGPPGEKGEVGDVGSMGP--HGAPGPRGPQGPTGSEGTPGLPGGVGQPGAV 1201
Query: 291 GRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGG 350
G A G G + +GD G S P +G ++G G
Sbjct: 1202 GEKGERGDAGDP--GPPGAPGIPGPKGDIGEKGDSGPSGAAG---------PPGKKGPPG 1250
Query: 351 EGEGTHATHGPASPPG 366
E +G + GP PG
Sbjct: 1251 E-DGAKGSVGPTGLPG 1265
Score = 37.0 bits (84), Expect = 0.040
Identities = 59/243 (24%), Positives = 78/243 (32%), Gaps = 59/243 (24%)
Query: 165 GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPA-----R 219
G+ A+ ++ + G PP G G S PP P PGP P
Sbjct: 379 GEPAVIEKGQQFEG----PPGAPGPQGVVGPSGPPGPPGFPGDPGPPGPAGLPGIPGIDG 434
Query: 220 VREPGR---------AEGASREPRLRSRAARPPPA---------PGPGALSRASRSRAAG 261
+R P A G+ + P + + A+ PG + R G
Sbjct: 435 IRGPPGTVIMMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVG 494
Query: 262 RPG-PGFHGGEKAAAPRAPGGGGGRN--PGALGRAAPPS-------------RARQDAWG 305
PG PG G E A P+ P G G + PG +G+ P + + G
Sbjct: 495 LPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDG 554
Query: 306 LSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPP 365
L G +RGD G PP G RG EG G A P
Sbjct: 555 LPGLPGEKGQRGDFGHVGQPGPPGEDG------------ERG----AEGPPGPTGQAGEP 598
Query: 366 GRR 368
G R
Sbjct: 599 GPR 601
Score = 35.0 bits (79), Expect = 0.15
Identities = 44/159 (27%), Positives = 52/159 (32%), Gaps = 24/159 (15%)
Query: 180 KPTPPRQEGSFG-----GRPKSQ-PPLPQETAAPAPQPGPTAPPARVREPGRAEGASREP 233
K PP ++G+ G G P PP + PG P V PG GAS EP
Sbjct: 1245 KKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPG-PPGASGEP 1303
Query: 234 RLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRA 293
+ P+ G R A G PGP G GR G +G
Sbjct: 1304 GAPGPPGKRGPSGHMGREGREGEKGAKGEPGPD--------------GPPGRT-GPMGAR 1348
Query: 294 APPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSG 332
PP R + GL G G G PP G
Sbjct: 1349 GPPGRVGPE--GLRGIPGPVGEPGLLGAPGQMGPPGPLG 1385
Score = 34.3 bits (77), Expect = 0.26
Identities = 49/182 (26%), Positives = 64/182 (35%), Gaps = 37/182 (20%)
Query: 70 PKRSGDMGKYHAHGH-----LRAPVFPVAK-GSVPSEGRATPPLPHPGDHHPRHRKNRGP 123
P R+G MG G LR PV + G + + G+ PP P P + + GP
Sbjct: 1339 PGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGP 1398
Query: 124 SAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAI--FQRPPVYLGNKP 181
+G L L+ PP E G + + Q PP G+ P
Sbjct: 1399 KGEKGHIG--------------LIGLI-----GPPGEAGEKGDQGLPGVQGPPGPKGD-P 1438
Query: 182 TPPRQEGSFG--GRPKSQPPLPQETAAPAP-------QPGPTAPPARVREPGRAEGASRE 232
PP GS G G P PL Q+ + +P GP PP P G R
Sbjct: 1439 GPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGAPAELHGLRRR 1498
Query: 233 PR 234
R
Sbjct: 1499 RR 1500
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,847,847
Number of Sequences: 37866
Number of extensions: 1994839
Number of successful extensions: 27871
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 2246
Number of HSP's that attempted gapping in prelim test: 13925
Number of HSP's gapped (non-prelim): 9923
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.