Guide to the Human Genome
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Name: LOC100128610 Sequence: fasta or formatted (341aa) NCBI GI: 239754340
Description:

PREDICTED: similar to Putative UPF0607 protein ENSP00000383144

Not currently referenced in the text

Other entries for this name:
alt prot {341aa} PREDICTED: similar to Putative UPF0607 protein ENSP00000383144
alt prot {341aa} PREDICTED: similar to Putative UPF0607 protein ENSP00000383144
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         19           2
 C cysteine            1.8          6           1
 D aspartate           2.6          9           1
 E glutamate           4.1         14           2
 F phenylalanine       2.1          7           1
 G glycine             7.9         27           2
 H histidine           2.1          7           1
 I isoleucine          1.2          4           1
 K lysine              7.0         24           2
 L leucine            11.7         40           2
 M methionine          1.8          6           2
 N asparagine          3.5         12           1
 P proline            12.0         41           3
 Q glutamine           5.6         19           2
 R arginine            9.4         32           3
 S serine             10.0         34           3
 T threonine           3.5         12           1
 V valine              5.6         19           2
 W tryptophan          1.2          4           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative UPF0607 protein ENSP... 
LOC100128610          0.993   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.988   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100129307          0.901   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.898   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.896   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC729159             0.868   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729159             0.868   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100131107          0.868   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.868   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.868   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC729159             0.859   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100132229          0.682   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC100132229          0.680   PREDICTED: hypothetical protein 
LOC100132229          0.677   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
C15orf2               0.260   hypothetical protein LOC23742 
LOC729537             0.239   PREDICTED: hypothetical protein 
LOC729537             0.233   PREDICTED: hypothetical protein 
LOC100292653          0.033   PREDICTED: similar to hCG1998564 
SYNJ1                 0.028   synaptojanin 1 isoform d 
WIPF3                 0.024   WAS/WASL interacting protein family, member 3 [Homo...
SYNJ1                 0.022   synaptojanin 1 isoform c 
SYNJ1                 0.022   synaptojanin 1 isoform a 
SYNJ1                 0.022   synaptojanin 1 isoform b 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
TBX10                 0.018   T-box 10 
POM121C               0.018   POM121 membrane glycoprotein (rat)-like 
POM121                0.018   nuclear pore membrane protein 121 
LOC729915             0.016   PREDICTED: similar to Putative POM121-like protein ...
ROBO3                 0.015   roundabout, axon guidance receptor, homolog 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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