Guide to the Human Genome
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Name: LOC100131107 Sequence: fasta or formatted (341aa) NCBI GI: 239752908
Description:

PREDICTED: UPF0607 protein ENSP00000383783-like

Not currently referenced in the text

Other entries for this name:
alt mRNA {341aa} PREDICTED: UPF0607 protein ENSP00000383783-like
alt mRNA {341aa} PREDICTED: UPF0607 protein ENSP00000383783-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         20           2
 C cysteine            2.1          7           1
 D aspartate           3.2         11           1
 E glutamate           5.9         20           2
 F phenylalanine       1.8          6           1
 G glycine             6.2         21           2
 H histidine           2.9         10           1
 I isoleucine          1.5          5           1
 K lysine              7.0         24           2
 L leucine            11.7         40           2
 M methionine          2.6          9           2
 N asparagine          3.2         11           1
 P proline            11.4         39           3
 Q glutamine           5.6         19           2
 R arginine            7.6         26           3
 S serine             11.1         38           2
 T threonine           3.2         11           1
 V valine              5.3         18           2
 W tryptophan          1.2          4           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho... 
LOC100131107          1.000   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          1.000   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100129307          0.912   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.909   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.905   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100128610          0.878   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC729159             0.878   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100128610          0.872   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.872   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC729159             0.869   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729159             0.860   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100132229          0.702   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC100132229          0.700   PREDICTED: hypothetical protein 
LOC100132229          0.697   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
C15orf2               0.253   hypothetical protein LOC23742 
LOC729537             0.240   PREDICTED: hypothetical protein 
LOC729537             0.235   PREDICTED: hypothetical protein 
LOC100292653          0.036   PREDICTED: similar to hCG1998564 
SYNJ1                 0.024   synaptojanin 1 isoform d 
TICAM1                0.022   toll-like receptor adaptor molecule 1 
POM121                0.022   nuclear pore membrane protein 121 
SCAF1                 0.021   SR-related CTD-associated factor 1 
POM121C               0.021   POM121 membrane glycoprotein (rat)-like 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
NFATC4                0.019   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.019   nuclear factor of activated T-cells, cytoplasmic, ca...
MLL2                  0.019   myeloid/lymphoid or mixed-lineage leukemia 2 
GON4L                 0.019   gon-4-like isoform a 
GON4L                 0.019   gon-4-like isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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