Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TBX10 Sequence: fasta or formatted (385aa) NCBI GI: 32567784
Description:

T-box 10

Referenced in:

T Box Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         34           2
 C cysteine            0.8          3           1
 D aspartate           4.9         19           2
 E glutamate           3.4         13           2
 F phenylalanine       4.4         17           1
 G glycine             6.5         25           2
 H histidine           2.9         11           2
 I isoleucine          3.1         12           2
 K lysine              4.4         17           1
 L leucine            10.1         39           2
 M methionine          2.1          8           1
 N asparagine          2.9         11           2
 P proline            11.2         43           3
 Q glutamine           4.4         17           1
 R arginine            6.0         23           2
 S serine              8.6         33           2
 T threonine           6.0         23           2
 V valine              5.2         20           2
 W tryptophan          1.6          6           1
 Y tyrosine            2.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-box 10 
TBX1                  0.473   T-box 1 isoform C 
TBX1                  0.466   T-box 1 isoform A 
TBX1                  0.465   T-box 1 isoform B 
TBX20                 0.285   T-box transcription factor TBX20 
TBX4                  0.281   T-box 4 
TBX18                 0.280   T-box 18 
TBX5                  0.272   T-box 5 isoform 2 
TBX15                 0.272   T-box 15 
TBX5                  0.270   T-box 5 isoform 1 
TBX5                  0.270   T-box 5 isoform 1 
TBX2                  0.270   T-box 2 
TBX3                  0.270   T-box 3 protein isoform 1 
TBX5                  0.268   T-box 5 isoform 3 
TBX3                  0.254   T-box 3 protein isoform 2 
TBX22                 0.251   T-box 22 isoform 1 
TBX22                 0.251   T-box 22 isoform 1 
TBX6                  0.251   T-box 6 
MGA                   0.217   MAX gene associated 
TBX21                 0.206   T-box 21 
TBX22                 0.202   T-box 22 isoform 2 
TBR1                  0.197   T-box, brain, 1 
T                     0.191   transcription factor T 
TBX19                 0.191   T-box 19 
EOMES                 0.186   eomesodermin 
LOC100128610          0.016   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.016   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.016   PREDICTED: similar to Putative UPF0607 protein ENSP...
PRCC                  0.013   papillary renal cell carcinoma translocation-associa...
PRCC                  0.013   papillary renal cell carcinoma translocation-associa...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press