Guide to the Human Genome
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Name: LOC729537 Sequence: fasta or formatted (310aa) NCBI GI: 239755085
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {310aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         18           2
 C cysteine            2.6          8           1
 D aspartate           2.9          9           1
 E glutamate           5.2         16           3
 F phenylalanine       2.6          8           1
 G glycine             7.7         24           2
 H histidine           2.3          7           1
 I isoleucine          2.3          7           1
 K lysine              4.8         15           2
 L leucine            11.0         34           2
 M methionine          1.3          4           2
 N asparagine          3.5         11           2
 P proline            15.8         49           3
 Q glutamine           4.5         14           2
 R arginine            5.8         18           3
 S serine             10.0         31           2
 T threonine           4.5         14           2
 V valine              6.1         19           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729537             0.995   PREDICTED: hypothetical protein 
C15orf2               0.352   hypothetical protein LOC23742 
LOC100132229          0.348   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC100132229          0.347   PREDICTED: hypothetical protein 
LOC100132229          0.347   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC729159             0.340   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729159             0.340   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729159             0.334   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100129307          0.277   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.274   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.272   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100131107          0.261   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.261   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.261   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100128610          0.261   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.261   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.259   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100292653          0.060   PREDICTED: similar to hCG1998564 
FGD1                  0.039   faciogenital dysplasia protein 
GLTSCR1               0.039   glioma tumor suppressor candidate region gene 1 [Ho...
WNK2                  0.034   WNK lysine deficient protein kinase 2 
MLL                   0.031   myeloid/lymphoid or mixed-lineage leukemia protein [...
MXRA7                 0.029   transmembrane anchor protein 1 isoform 1 
PRG4                  0.028   proteoglycan 4 isoform D 
PRG4                  0.028   proteoglycan 4 isoform C 
PRG4                  0.028   proteoglycan 4 isoform B 
PRG4                  0.028   proteoglycan 4 isoform A 
MXRA7                 0.028   transmembrane anchor protein 1 isoform 2 
MAP6                  0.028   microtubule-associated protein 6 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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