Guide to the Human Genome
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Name: LOC100292653 Sequence: fasta or formatted (526aa) NCBI GI: 239754624
Description:

PREDICTED: similar to hCG1998564

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         48           5
 C cysteine            1.7          9           1
 D aspartate           2.9         15           2
 E glutamate           4.9         26           3
 F phenylalanine       1.7          9           1
 G glycine             6.8         36           2
 H histidine           1.5          8           2
 I isoleucine          2.9         15           2
 K lysine              4.8         25           2
 L leucine             9.5         50           3
 M methionine          0.8          4           1
 N asparagine          3.2         17           1
 P proline            10.5         55           4
 Q glutamine           3.6         19           1
 R arginine            8.4         44           3
 S serine             14.8         78           4
 T threonine           5.3         28           2
 V valine              4.4         23           2
 W tryptophan          1.9         10           2
 Y tyrosine            1.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1998564 
POM121                0.644   nuclear pore membrane protein 121 
POM121C               0.633   POM121 membrane glycoprotein (rat)-like 
LOC100288540          0.346   PREDICTED: hypothetical protein XP_002342775 
POM121L2              0.217   POM121 membrane glycoprotein-like 2 
POMZP3                0.118   POMZP3 fusion protein isoform 2 
POMZP3                0.118   POMZP3 fusion protein isoform 1 
LOC100294020          0.116   PREDICTED: similar to POM121-like 1, partial 
LOC729915             0.109   PREDICTED: similar to Putative POM121-like protein ...
LOC100133280          0.108   PREDICTED: similar to Putative POM121-like protein ...
C15orf2               0.073   hypothetical protein LOC23742 
POM121L12             0.041   POM121 membrane glycoprotein-like 12 
LOC729537             0.036   PREDICTED: hypothetical protein 
LOC100132229          0.035   PREDICTED: hypothetical protein 
LOC100132229          0.035   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC729537             0.035   PREDICTED: hypothetical protein 
LOC100132229          0.034   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC729159             0.033   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100129307          0.032   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.031   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC729159             0.031   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729159             0.031   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100129307          0.031   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
SRRM2                 0.026   splicing coactivator subunit SRm300 
LOC100131107          0.023   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.023   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.023   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100128610          0.021   PREDICTED: similar to Putative UPF0607 protein ENSP...
RBMX2                 0.021   RNA binding motif protein, X-linked 2 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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