Guide to the Human Genome
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Name: LOC100132229 Sequence: fasta or formatted (352aa) NCBI GI: 169172709
Description:

PREDICTED: UPF0607 protein ENSP00000382826-like

Not currently referenced in the text

Other entries for this name:
alt prot {352aa} PREDICTED: UPF0607 protein ENSP00000382826-like
alt prot {352aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         26           2
 C cysteine            1.4          5           1
 D aspartate           2.8         10           1
 E glutamate           4.3         15           2
 F phenylalanine       2.8         10           1
 G glycine             8.0         28           2
 H histidine           3.1         11           1
 I isoleucine          1.4          5           1
 K lysine              5.4         19           2
 L leucine            10.5         37           2
 M methionine          2.3          8           2
 N asparagine          3.1         11           1
 P proline            13.1         46           2
 Q glutamine           4.8         17           1
 R arginine            7.7         27           2
 S serine              9.4         33           2
 T threonine           3.4         12           1
 V valine              6.5         23           2
 W tryptophan          2.0          7           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho... 
LOC100132229          0.997   PREDICTED: hypothetical protein 
LOC100132229          0.994   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC729159             0.877   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729159             0.873   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729159             0.871   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100129307          0.697   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.693   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.688   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100131107          0.667   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.667   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.667   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100128610          0.653   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.652   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.649   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC729537             0.303   PREDICTED: hypothetical protein 
LOC729537             0.299   PREDICTED: hypothetical protein 
C15orf2               0.249   hypothetical protein LOC23742 
LOC100292653          0.051   PREDICTED: similar to hCG1998564 
POM121                0.035   nuclear pore membrane protein 121 
POM121C               0.034   POM121 membrane glycoprotein (rat)-like 
LOC729915             0.025   PREDICTED: similar to Putative POM121-like protein ...
SYNJ1                 0.021   synaptojanin 1 isoform c 
LOC100294020          0.021   PREDICTED: similar to POM121-like 1, partial 
SYNJ1                 0.020   synaptojanin 1 isoform a 
SYNJ1                 0.020   synaptojanin 1 isoform b 
POM121L2              0.020   POM121 membrane glycoprotein-like 2 
C10orf12              0.020   hypothetical protein LOC26148 
LOC100133280          0.018   PREDICTED: similar to Putative POM121-like protein ...
SYNJ1                 0.017   synaptojanin 1 isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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