Guide to the Human Genome
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Name: C15orf2 Sequence: fasta or formatted (1156aa) NCBI GI: 112421134
Description:

hypothetical protein LOC23742

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         97           4
 C cysteine            1.4         16           1
 D aspartate           3.3         38           2
 E glutamate           3.5         41           2
 F phenylalanine       3.2         37           1
 G glycine             7.3         84           2
 H histidine           1.8         21           1
 I isoleucine          3.9         45           2
 K lysine              3.5         41           2
 L leucine             8.0         92           3
 M methionine          2.0         23           1
 N asparagine          3.0         35           1
 P proline            14.5        168           3
 Q glutamine           3.9         45           2
 R arginine            4.4         51           3
 S serine             12.8        148           3
 T threonine           8.5         98           3
 V valine              4.8         55           2
 W tryptophan          0.4          5           1
 Y tyrosine            1.4         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC23742 
LOC729537             0.094   PREDICTED: hypothetical protein 
LOC729159             0.093   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729537             0.092   PREDICTED: hypothetical protein 
LOC729159             0.091   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729159             0.089   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100129307          0.079   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.078   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.077   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100132229          0.076   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC100132229          0.076   PREDICTED: hypothetical protein 
LOC100128610          0.076   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100132229          0.076   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC100128610          0.076   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.076   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100131107          0.073   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.073   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.073   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
POM121C               0.072   POM121 membrane glycoprotein (rat)-like 
POM121                0.068   nuclear pore membrane protein 121 
LOC100288540          0.056   PREDICTED: hypothetical protein XP_002342775 
POM121L2              0.046   POM121 membrane glycoprotein-like 2 
LOC100292653          0.032   PREDICTED: similar to hCG1998564 
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
MUC17                 0.031   mucin 17 
NACA                  0.029   nascent polypeptide-associated complex alpha subuni...
C13orf23              0.029   hypothetical protein LOC80209 isoform 2 
C13orf23              0.029   hypothetical protein LOC80209 isoform 1 
MUC4                  0.029   mucin 4 isoform a 
MUC2                  0.028   mucin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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