Guide to the Human Genome
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Name: LOC100129307 Sequence: fasta or formatted (341aa) NCBI GI: 239750549
Description:

PREDICTED: UPF0607 protein ENSP00000383144-like

Not currently referenced in the text

Other entries for this name:
alt prot {341aa} PREDICTED: UPF0607 protein ENSP00000383144-like
alt prot {341aa} PREDICTED: UPF0607 protein ENSP00000383144-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         20           2
 C cysteine            1.5          5           1
 D aspartate           2.9         10           1
 E glutamate           5.3         18           2
 F phenylalanine       1.5          5           1
 G glycine             7.6         26           2
 H histidine           2.9         10           1
 I isoleucine          1.2          4           1
 K lysine              6.7         23           2
 L leucine            11.7         40           2
 M methionine          2.3          8           2
 N asparagine          3.2         11           1
 P proline            12.0         41           3
 Q glutamine           5.6         19           2
 R arginine            9.1         31           3
 S serine              9.1         31           2
 T threonine           4.1         14           1
 V valine              5.3         18           2
 W tryptophan          1.2          4           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho... 
LOC100129307          0.996   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.996   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC729159             0.914   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729159             0.907   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100128610          0.907   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100131107          0.904   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.904   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.904   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100128610          0.901   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.899   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC729159             0.896   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100132229          0.724   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC100132229          0.723   PREDICTED: hypothetical protein 
LOC100132229          0.720   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
C15orf2               0.270   hypothetical protein LOC23742 
LOC729537             0.253   PREDICTED: hypothetical protein 
LOC729537             0.249   PREDICTED: hypothetical protein 
LOC100292653          0.049   PREDICTED: similar to hCG1998564 
POM121                0.030   nuclear pore membrane protein 121 
POM121C               0.028   POM121 membrane glycoprotein (rat)-like 
C10orf12              0.025   hypothetical protein LOC26148 
LOC100294020          0.024   PREDICTED: similar to POM121-like 1, partial 
LOC729915             0.022   PREDICTED: similar to Putative POM121-like protein ...
FBRS                  0.021   fibrosin 
SYNJ1                 0.021   synaptojanin 1 isoform d 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
LOC100294312          0.018   PREDICTED: hypothetical protein XP_002344082 
LOC100294220          0.018   PREDICTED: hypothetical protein 
LOC100294184          0.018   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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