Guide to the Human Genome
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Name: LOC100128610 Sequence: fasta or formatted (341aa) NCBI GI: 169169422
Description:

PREDICTED: similar to Putative UPF0607 protein ENSP00000383144

Not currently referenced in the text

Other entries for this name:
alt prot {341aa} PREDICTED: similar to Putative UPF0607 protein ENSP00000383144
alt prot {341aa} PREDICTED: similar to Putative UPF0607 protein ENSP00000383144
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         19           2
 C cysteine            1.8          6           1
 D aspartate           2.3          8           1
 E glutamate           4.4         15           2
 F phenylalanine       1.8          6           1
 G glycine             7.6         26           2
 H histidine           2.1          7           1
 I isoleucine          1.2          4           1
 K lysine              7.0         24           2
 L leucine            12.0         41           2
 M methionine          1.8          6           2
 N asparagine          3.5         12           1
 P proline            12.0         41           3
 Q glutamine           5.6         19           2
 R arginine            9.4         32           3
 S serine             10.0         34           3
 T threonine           3.5         12           1
 V valine              5.9         20           2
 W tryptophan          1.2          4           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative UPF0607 protein ENSP... 
LOC100128610          0.997   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100128610          0.991   PREDICTED: similar to Putative UPF0607 protein ENSP...
LOC100129307          0.905   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.902   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.900   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC729159             0.872   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC729159             0.872   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100131107          0.871   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.871   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100131107          0.871   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC729159             0.854   PREDICTED: UPF0607 protein ENSP00000381418-like [Ho...
LOC100132229          0.682   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC100132229          0.679   PREDICTED: hypothetical protein 
LOC100132229          0.676   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
C15orf2               0.262   hypothetical protein LOC23742 
LOC729537             0.238   PREDICTED: hypothetical protein 
LOC729537             0.234   PREDICTED: hypothetical protein 
LOC100292653          0.030   PREDICTED: similar to hCG1998564 
SYNJ1                 0.030   synaptojanin 1 isoform d 
WIPF3                 0.024   WAS/WASL interacting protein family, member 3 [Homo...
SYNJ1                 0.022   synaptojanin 1 isoform c 
SYNJ1                 0.022   synaptojanin 1 isoform a 
SYNJ1                 0.022   synaptojanin 1 isoform b 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
TBX10                 0.018   T-box 10 
LOC729915             0.016   PREDICTED: similar to Putative POM121-like protein ...
ROBO3                 0.016   roundabout, axon guidance receptor, homolog 3 
FLJ22184              0.015   PREDICTED: hypothetical protein LOC80164 
SCAF1                 0.015   SR-related CTD-associated factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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