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Search of human proteins with 239754096
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo
sapiens]
(297 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo ... 603 e-173
gi|239748653 PREDICTED: hypothetical protein [Homo sapiens] 593 e-170
gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo ... 593 e-170
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 39 0.006
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 39 0.006
gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens] 39 0.007
gi|167614500 lymphocyte-activation protein 3 precursor [Homo sap... 38 0.012
gi|28875797 small protein rich in arginine and glycine [Homo sap... 37 0.016
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 37 0.021
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 37 0.021
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 36 0.036
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 36 0.047
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 35 0.10
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 34 0.14
gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo sap... 34 0.14
gi|169208488 PREDICTED: hypothetical protein [Homo sapiens] 34 0.14
gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo sap... 34 0.14
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 34 0.18
gi|124378039 SEC16 homolog A [Homo sapiens] 33 0.23
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo ... 33 0.23
gi|113423529 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.30
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.30
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.30
gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens] 33 0.30
gi|76781485 vascular endothelial growth factor A isoform f precu... 33 0.39
gi|76781484 vascular endothelial growth factor A isoform e precu... 33 0.39
gi|76781483 vascular endothelial growth factor A isoform d precu... 33 0.39
>gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo
sapiens]
Length = 297
Score = 603 bits (1555), Expect = e-173
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR
Sbjct: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
Query: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIRVAEPKTSPEALRLRLAGLKASP 120
RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIRVAEPKTSPEALRLRLAGLKASP
Sbjct: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIRVAEPKTSPEALRLRLAGLKASP 120
Query: 121 SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW 180
SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW
Sbjct: 121 SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW 180
Query: 181 DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 240
DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV
Sbjct: 181 DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 240
Query: 241 QQRGGLPVQWSQGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 297
QQRGGLPVQWSQGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV
Sbjct: 241 QQRGGLPVQWSQGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 297
>gi|239748653 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 593 bits (1530), Expect = e-170
Identities = 294/297 (98%), Positives = 295/297 (99%), Gaps = 2/297 (0%)
Query: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR
Sbjct: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
Query: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIRVAEPKTSPEALRLRLAGLKASP 120
RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIR EPKTSPEALRLRLAGLKASP
Sbjct: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIR--EPKTSPEALRLRLAGLKASP 118
Query: 121 SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW 180
SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW
Sbjct: 119 SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW 178
Query: 181 DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 240
DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV
Sbjct: 179 DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 238
Query: 241 QQRGGLPVQWSQGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 297
QQRGGLPVQWS+GPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV
Sbjct: 239 QQRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295
>gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo
sapiens]
Length = 295
Score = 593 bits (1530), Expect = e-170
Identities = 294/297 (98%), Positives = 295/297 (99%), Gaps = 2/297 (0%)
Query: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR
Sbjct: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
Query: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIRVAEPKTSPEALRLRLAGLKASP 120
RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIR EPKTSPEALRLRLAGLKASP
Sbjct: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIR--EPKTSPEALRLRLAGLKASP 118
Query: 121 SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW 180
SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW
Sbjct: 119 SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW 178
Query: 181 DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 240
DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV
Sbjct: 179 DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 238
Query: 241 QQRGGLPVQWSQGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 297
QQRGGLPVQWS+GPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV
Sbjct: 239 QQRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 38.9 bits (89), Expect = 0.006
Identities = 59/194 (30%), Positives = 75/194 (38%), Gaps = 40/194 (20%)
Query: 113 LAGLKASPSFKDPESRFMEPWAP-LPLLVGE---GTPAGSSWRGSPGARRLPLPARVAER 168
L G+K P F P+ EP P LP GE P G RG PGA P P
Sbjct: 336 LPGIKGEPGFIGPQG---EPGLPGLPGTKGERGEAGPPGRGERGEPGA---PGPKGKQGE 389
Query: 169 GGARVSR-----RGPRWDSGP--------QTGGQAHAELLALERRLPEHSPLRALKPLAV 215
G R + RG + DSG Q G Q E++ L H L+ + L V
Sbjct: 390 SGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNL--HEALQRITTLTV 447
Query: 216 GGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLP-VQWSQGPRDLCWLRPTAGCNRGPGPRG 274
GP G +GL+ G + Q G+P + QG L+ + G PG G
Sbjct: 448 TGPPGPPG------PQGLQ-GPKGEQGSPGIPGMDGEQG------LKGSKGDMGDPGMTG 494
Query: 275 CAKGSVGRGGARAA 288
KG +G G A
Sbjct: 495 -EKGGIGLPGLPGA 507
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 38.9 bits (89), Expect = 0.006
Identities = 59/194 (30%), Positives = 75/194 (38%), Gaps = 40/194 (20%)
Query: 113 LAGLKASPSFKDPESRFMEPWAP-LPLLVGE---GTPAGSSWRGSPGARRLPLPARVAER 168
L G+K P F P+ EP P LP GE P G RG PGA P P
Sbjct: 336 LPGIKGEPGFIGPQG---EPGLPGLPGTKGERGEAGPPGRGERGEPGA---PGPKGKQGE 389
Query: 169 GGARVSR-----RGPRWDSGP--------QTGGQAHAELLALERRLPEHSPLRALKPLAV 215
G R + RG + DSG Q G Q E++ L H L+ + L V
Sbjct: 390 SGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNL--HEALQRITTLTV 447
Query: 216 GGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLP-VQWSQGPRDLCWLRPTAGCNRGPGPRG 274
GP G +GL+ G + Q G+P + QG L+ + G PG G
Sbjct: 448 TGPPGPPG------PQGLQ-GPKGEQGSPGIPGMDGEQG------LKGSKGDMGDPGMTG 494
Query: 275 CAKGSVGRGGARAA 288
KG +G G A
Sbjct: 495 -EKGGIGLPGLPGA 507
>gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
Length = 503
Score = 38.5 bits (88), Expect = 0.007
Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 107 EALRLRL-AGLKASPSFKDPESRFMEPWAPLPL---------LVGEGTPAGSSWRGSPGA 156
E RLR A L+A P+ P + EPW P G+ P+ +SW GS G
Sbjct: 64 EEARLREDAPLRARPAAASPRA---EPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGL 120
Query: 157 RRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVG 216
PA++ R R S D +T +A RR SP A P ++
Sbjct: 121 AYPARPAQLRRRASVRGSSEE---DEDARTPDRATQGPGLAARRWWAASPAPARLPSSLL 177
Query: 217 GP------RGRRAGRLGSLRRGLRLGRQ 238
GP R RAG G+ R +GR+
Sbjct: 178 GPDPRPGLRATRAGPAGAARARPEVGRR 205
>gi|167614500 lymphocyte-activation protein 3 precursor [Homo
sapiens]
Length = 525
Score = 37.7 bits (86), Expect = 0.012
Identities = 44/146 (30%), Positives = 58/146 (39%), Gaps = 16/146 (10%)
Query: 129 FMEP-W-APL-PLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQ 185
F++P W AP+ PL G P + G+P +LP + + + + R G W P
Sbjct: 11 FLQPLWVAPVKPLQPGAEVPVVWAQEGAPA--QLPCSPTIPLQDLSLLRRAGVTWQHQPD 68
Query: 186 TGGQAHAELLALERRLPEHSPLRALKPLAVG--GPRGRRAGRLGSLRRGLRLGRQRVQQR 243
+G A A P H P A GPR RR L GLR GR +Q R
Sbjct: 69 SGPPAAA---------PGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPR 119
Query: 244 GGLPVQWSQGPRDLCWLRPTAGCNRG 269
L + Q WLRP + G
Sbjct: 120 VQLDERGRQRGDFSLWLRPARRADAG 145
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 37.4 bits (85), Expect = 0.016
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 206 PLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQ-RVQQRGGLPVQWSQGPRDLCWLRPTA 264
P+ AL A+GG RG + G R GLR GR R RGG+ ++ R + P
Sbjct: 91 PIGALARGAIGG-RGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRM 149
Query: 265 GCNRG-------PGPRGCAKGSVGRGG 284
G RG PG G +G++GRGG
Sbjct: 150 GLRRGGVRGRGGPGRGGLGRGAMGRGG 176
Score = 35.8 bits (81), Expect = 0.047
Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 21/108 (19%)
Query: 143 GTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLP 202
G P G+ RG+ G R LP+ R RGG R GG+A LL L
Sbjct: 89 GRPIGALARGAIGGRGLPIIQRGLPRGGLR--------------GGRATRTLLRGGMSLR 134
Query: 203 EHSPL---RALKP---LAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRG 244
+ L RA+ P L GG RGR G L RG +GR + RG
Sbjct: 135 GQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRG-AMGRGGIGGRG 181
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 37.0 bits (84), Expect = 0.021
Identities = 68/238 (28%), Positives = 84/238 (35%), Gaps = 63/238 (26%)
Query: 65 GEGAAAPGMVPAGDSRPLT-----------ALLACNLNPFYLLIR--VAEPKTSPEALRL 111
GE A A G P PL A LA + P ++ VA+P +
Sbjct: 455 GEAALATGEGPQARVHPLVDGQQGGALEGLAALATLVGPLARVVPQVVAQPGGA------ 508
Query: 112 RLAGLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARR-----------LP 160
L GL A +F P R + G WR G RR L
Sbjct: 509 -LEGLAALGTFVGPLRR---------------SGGGRGWRRDGGGRRQRFLGAGHLRSLS 552
Query: 161 LPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGG--- 217
L R RG V+ R ++G G A A RLP SP+ L V G
Sbjct: 553 LRGRAPGRGLFHVALL-MRQEAGQLREGAVAA---AAAERLPAGSPVAVL----VAGEPS 604
Query: 218 --PRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSQGPRDLCWLRPTAGCNRGPGPR 273
P G AG+ G RRG GR+ ++QRG +W G L G GPG R
Sbjct: 605 HRPEGLAAGQTGKARRGGGGGRRGLRQRG----RWLVGLGRLGGCLLGLGRRIGPGAR 658
Score = 30.0 bits (66), Expect = 2.6
Identities = 46/167 (27%), Positives = 60/167 (35%), Gaps = 31/167 (18%)
Query: 143 GTPAGSSWRGSPGARRLPLPA------RVAERGGARVSRRGPRWDSGPQTGGQAHAELLA 196
G+P G P R L A R GG R R+ RW G G+ LL
Sbjct: 592 GSPVAVLVAGEPSHRPEGLAAGQTGKARRGGGGGRRGLRQRGRWLVGL---GRLGGCLLG 648
Query: 197 LERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQ-------QRGG---- 245
L RR+ + L + L + L RGLR ++ ++ +RGG
Sbjct: 649 LGRRIGPGARLVLQEQLLAAESLLAAIAAVHQLHRGLRRRQKELRHHGRGRGRRGGRRGR 708
Query: 246 -----LPVQWSQGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARA 287
+P+Q DL L G RG G RG G G RA
Sbjct: 709 AVGLEVPLQVGVAHEDLAGLPGLGGRGRGGGTRG------GGGAVRA 749
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 37.0 bits (84), Expect = 0.021
Identities = 47/185 (25%), Positives = 66/185 (35%), Gaps = 18/185 (9%)
Query: 21 QVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKRRREP-GEGAAAPGMVPAGDS 79
+ L GQ+G A G A L + + S + R+ EP G P + DS
Sbjct: 639 ETKLPGQEGAAA--PGEAGAVCLKKETPQASEKVDPGSCRKAEPLASGKGEPVSLGKADS 696
Query: 80 RPLTALLACNLNPFY-LLIRVAEPKTSPEALRLRLAGLKASPSFKDPESRFMEPWAPLPL 138
P + +L L + +P +S L + G SP +EP A P+
Sbjct: 697 APSRKTESPSLGKVVPLSLEKTKPSSSSRQLDRKALGSARSPEGARGSEGRVEPKAE-PV 755
Query: 139 LVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVS---RRGPRW----------DSGPQ 185
E + G + GA R P P A G R + P W D+G Q
Sbjct: 756 SSTEASSLGQKDLEAAGAERSPCPEAAAPPPGPRTRDNFTKAPSWEASAPPPPREDAGTQ 815
Query: 186 TGGQA 190
G QA
Sbjct: 816 AGAQA 820
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 36.2 bits (82), Expect = 0.036
Identities = 49/162 (30%), Positives = 61/162 (37%), Gaps = 25/162 (15%)
Query: 145 PAGSSWRGSPGARRLPLPARVAERGGARVSRR--GP------RWDSGPQTGGQAHAELLA 196
P+ S SP AR++ L + RG + R GP RWD P A L+
Sbjct: 49 PSSSQALHSP-ARQVHLVWLLRSRGFREIKERAQGPGASPWGRWDWSPSP---RFAARLS 104
Query: 197 LERRLPEHSPLRALK-----PLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWS 251
P+ R + P GGPRG+ AGR G + R R GR+R + PV
Sbjct: 105 TSSPFPQGRAQRPQRGGVDLPATPGGPRGQCAGRSGDVLR--RAGRRRARPP---PVPRL 159
Query: 252 QGPRDLCWLRPTAGCNRGPG-PRGCAKGSVGRGGARAAPNHT 292
PR RP P P G G GR P T
Sbjct: 160 PAPR--APRRPRGPATPDPSPPAGRPHGPAGRAAPGRRPGCT 199
Score = 31.2 bits (69), Expect = 1.1
Identities = 54/199 (27%), Positives = 68/199 (34%), Gaps = 61/199 (30%)
Query: 99 VAEPKTSPEAL-----RLRLAGLKASPSFKDPESRFMEP---------WAPLP-----LL 139
+A+P +S +AL ++ L L S F++ + R P W+P P L
Sbjct: 45 LADPPSSSQALHSPARQVHLVWLLRSRGFREIKERAQGPGASPWGRWDWSPSPRFAARLS 104
Query: 140 VGEGTPAGSSWRGSPGARRLPLP------------ARVAERGGARVSR----------RG 177
P G + R G LP V R G R +R R
Sbjct: 105 TSSPFPQGRAQRPQRGGVDLPATPGGPRGQCAGRSGDVLRRAGRRRARPPPVPRLPAPRA 164
Query: 178 PRWDSGPQTGGQAHAELLALERRLPEHSPL--RALKPLAVGGPRGRRAGRLGSLRRGLRL 235
PR GP T P+ SP R P P GRR G LR R
Sbjct: 165 PRRPRGPAT---------------PDPSPPAGRPHGPAGRAAP-GRRPGCTAQLRAPGRR 208
Query: 236 GRQR--VQQRGGLPVQWSQ 252
GRQR V GG QW +
Sbjct: 209 GRQRLLVHPGGGGRRQWQR 227
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 35.8 bits (81), Expect = 0.047
Identities = 44/149 (29%), Positives = 56/149 (37%), Gaps = 31/149 (20%)
Query: 143 GTPAGSSWRGSPGARRLP----LPARVAERGGARVSRRGPRWDSG-PQTGGQAHAELLAL 197
G P + GSPGAR P LP RG GP+ + G P + G+A
Sbjct: 273 GNPGEVGFAGSPGARGFPGAPGLPGLKGHRG--HKGLEGPKGEVGAPGSKGEAGPT---- 326
Query: 198 ERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSQGPRDL 257
P+ A+ PL G G R GRLG + QRG + GP
Sbjct: 327 -------GPMGAMGPLGPRGMPGER-GRLGP--------QGAPGQRGAHGMPGKPGPMGP 370
Query: 258 CWLRPTAGCNRGPGPRGCAKGSVGRGGAR 286
+ ++G PG KG G GAR
Sbjct: 371 LGIPGSSGFPGNPG----MKGEAGPTGAR 395
Score = 28.9 bits (63), Expect = 5.7
Identities = 51/196 (26%), Positives = 68/196 (34%), Gaps = 43/196 (21%)
Query: 115 GLKASPSFKDPESRFMEPWAPLPLLVGE----GTPAGSSWRGSPGARRLPLPARVAERGG 170
GL +P + PE + AP GE G P RG PG+ LP
Sbjct: 573 GLTGNPGVQGPEGKLGPLGAP-----GEDGRPGPPGSIGIRGQPGSMGLP---------- 617
Query: 171 ARVSRRGPRWDSG-PQTGGQAHAELLALERRLP----EHSPLRALKPLAVGGPRGRRA-- 223
GP+ SG P G+A + +R P E P + P + G RG +
Sbjct: 618 ------GPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPP 671
Query: 224 ---------GRLGSLRRGLRLGRQRVQ-QRGGLPVQWSQGPRDLCWLRPTAGCNRGPGPR 273
G G G + G Q V G + +G R R G PG +
Sbjct: 672 GPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEK 731
Query: 274 GCAKGSVGRGGARAAP 289
G A G G G + +P
Sbjct: 732 GMA-GGHGPDGPKGSP 746
Score = 28.1 bits (61), Expect = 9.7
Identities = 46/164 (28%), Positives = 59/164 (35%), Gaps = 40/164 (24%)
Query: 132 PWAPLPLLVGEGTPAGSSWRGSPGAR-RLPLPARVAERGGARVSRRGPRWDSGPQTGGQA 190
P P P+ G P + RG PG+R + P R +RG +GPR D G G +
Sbjct: 1085 PGTPGPV----GAPGDAGQRGDPGSRGPIGPPGRAGKRG--LPGPQGPRGDKGDH-GDRG 1137
Query: 191 HAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQW 250
+R H L+ L GP G G GS G+P +
Sbjct: 1138 -------DRGQKGHRGFTGLQGLP--GPPGPN-GEQGS---------------AGIPGPF 1172
Query: 251 SQGPRDLCWLRPTAGCNRGPGPRG-----CAKGSVGRGGARAAP 289
GPR +G PGP G +GSVG G P
Sbjct: 1173 --GPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPP 1214
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 34.7 bits (78), Expect = 0.10
Identities = 50/170 (29%), Positives = 63/170 (37%), Gaps = 40/170 (23%)
Query: 115 GLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVS 174
G+ P P+ P P G GTP +G PG+R P RG
Sbjct: 1015 GMMGPPGVPGPKGSMGHPGMP----GGMGTPGEPGPQGPPGSRGPP-----GMRGAK--G 1063
Query: 175 RRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLR 234
RRGPR GP G Q R LK GP+G R GR G ++G+
Sbjct: 1064 RRGPRGPDGP-AGEQGS----------------RGLK--GPPGPQG-RPGRPG--QQGVA 1101
Query: 235 LGRQRVQQRGGLPVQWSQGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGG 284
R + RG + GP T G PGP+G +G +G G
Sbjct: 1102 GERGHLGSRGFPGIPGPSGPPG------TKGLPGEPGPQG-PQGPIGPPG 1144
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 34.3 bits (77), Expect = 0.14
Identities = 43/153 (28%), Positives = 56/153 (36%), Gaps = 25/153 (16%)
Query: 115 GLKASPSFKDPESRFMEPWA-----PLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERG 169
G+K S D + + +A P+ G W G RR +V +
Sbjct: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQGL 511
Query: 170 GARVSRRGPRWDSGPQTGGQAHA--ELLALERR--------------LPEHSPLRALKPL 213
RRGP+ +G Q G QA A AL R + RA KP+
Sbjct: 512 RGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVGARGRRRAHKPV 571
Query: 214 AVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGL 246
VG R R+G+ RR G RV QRG L
Sbjct: 572 VVGERLRGRGARVGTWRR----GGGRVAQRGQL 600
Score = 28.1 bits (61), Expect = 9.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 56 SRRKRRREPGEGAAAPGMVPAGDSRP 81
SR+K R PG A PG PAG P
Sbjct: 188 SRKKSFRAPGSPACGPGRRPAGTPMP 213
>gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 451
Score = 34.3 bits (77), Expect = 0.14
Identities = 49/155 (31%), Positives = 59/155 (38%), Gaps = 25/155 (16%)
Query: 151 RGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRAL 210
R PG P PAR E ++R P SG G A++ R L+
Sbjct: 114 RAIPGVH--PRPARQEE------AQRRPAPRSGSHEQG-------AVQARAAGRQQLQHR 158
Query: 211 KPLAVGGP-RGRRAGRLGSLR-RGLRLGRQRVQQRGGLPVQWSQGPRDLCWLRPTAGCNR 268
+P A G P R R A R+ LR RG R R Q RG V GP RP A R
Sbjct: 159 QPPARGRPVRRRPAARVLRLRCRGSR-ARSLQQARGQQRVAQGSGPVQRREARPGASRRR 217
Query: 269 GPG-------PRGCAKGSVGRGGARAAPNHTHVVP 296
GP PR G + + GA + H P
Sbjct: 218 GPALQQQLGHPRVSVPGGLVQRGAPRPVHRAHRGP 252
>gi|169208488 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 34.3 bits (77), Expect = 0.14
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 146 AGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHS 205
AGS R R +P + A R GAR +R P +G E A RL
Sbjct: 10 AGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGARSPRLGNRG 69
Query: 206 PLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWS 251
RA G P R +GRL S L L R+ R + +QWS
Sbjct: 70 LSRA------GSPLSRDSGRLLS---ALALPREAATGRLTVMLQWS 106
>gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 487
Score = 34.3 bits (77), Expect = 0.14
Identities = 49/155 (31%), Positives = 59/155 (38%), Gaps = 25/155 (16%)
Query: 151 RGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRAL 210
R PG P PAR E ++R P SG G A++ R L+
Sbjct: 114 RAIPGVH--PRPARQEE------AQRRPAPRSGSHEQG-------AVQARAAGRQQLQHR 158
Query: 211 KPLAVGGP-RGRRAGRLGSLR-RGLRLGRQRVQQRGGLPVQWSQGPRDLCWLRPTAGCNR 268
+P A G P R R A R+ LR RG R R Q RG V GP RP A R
Sbjct: 159 QPPARGRPVRRRPAARVLRLRCRGSR-ARSLQQARGQQRVAQGSGPVQRREARPGASRRR 217
Query: 269 GPG-------PRGCAKGSVGRGGARAAPNHTHVVP 296
GP PR G + + GA + H P
Sbjct: 218 GPALQQQLGHPRVSVPGGLVQRGAPRPVHRAHRGP 252
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 33.9 bits (76), Expect = 0.18
Identities = 41/151 (27%), Positives = 55/151 (36%), Gaps = 30/151 (19%)
Query: 141 GEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERR 200
GE PAG G+PGA P P A + G R GP +GP
Sbjct: 1037 GETGPAGPP--GAPGAPGAPGPVGPAGKSGDR-GETGPAGPAGPV--------------- 1078
Query: 201 LPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSQGPRDLCWL 260
P+ A P GPRG + RG++ RG +Q GP
Sbjct: 1079 ----GPVGARGPAGPQGPRGDKGETGEQGDRGIK------GHRGFSGLQGPPGPPGSPGE 1128
Query: 261 RPTAGCNRGPGPRG--CAKGSVGRGGARAAP 289
+ +G + GPRG + G+ G+ G P
Sbjct: 1129 QGPSGASGPAGPRGPPGSAGAPGKDGLNGLP 1159
Score = 32.3 bits (72), Expect = 0.52
Identities = 43/148 (29%), Positives = 51/148 (34%), Gaps = 26/148 (17%)
Query: 143 GTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLP 202
G P RG PG+R P VA G G R GP P
Sbjct: 479 GLPGPPGERGGPGSRGFPGADGVAGPKGP----AGERGSPGPAG---------------P 519
Query: 203 EHSPLRALKPLAVGGPRGR-RAGRLGSLRRGLRLGRQRVQQRGGLPVQWSQGPRDLCWLR 261
+ SP A +P G P + G GS + G + G P GP R
Sbjct: 520 KGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP-----GPPGPPGAR 574
Query: 262 PTAGCNRGPGPRGCAKGSVGRGGARAAP 289
AG PGP+G A G G+ G R P
Sbjct: 575 GQAGVMGFPGPKGAA-GEPGKAGERGVP 601
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 33.5 bits (75), Expect = 0.23
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 142 EGTPAGSSWRGSPGARRLPLPARVAERGG-------ARVSRRGPRWD-SGPQTGGQAHAE 193
+ TP GSS + SP + P PA ++ G AR S +GP GP T +AHA
Sbjct: 63 QSTPLGSSSKSSPPVLQGPAPAGFSQHPGLLVPHTHARDSSQGPCEPLPGPLTQPRAHA- 121
Query: 194 LLALERRLPEHSPLR-ALKPLAVGGPRGRRAGRLG 227
SP AL P A GP R+ +G
Sbjct: 122 -----------SPFSGALTPSAPPGPEMNRSAEVG 145
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 33.5 bits (75), Expect = 0.23
Identities = 50/171 (29%), Positives = 58/171 (33%), Gaps = 47/171 (27%)
Query: 141 GEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPR-WDSGPQTGGQAHAELLALER 199
G G GS R G R + +R+A G R PR W GGQ L +
Sbjct: 137 GRGAVRGSGKRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGW------GGQGAERLGVHQP 190
Query: 200 RLPEH-------------------SPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 240
LP H SP RA +P + G PR RR LGS R GR +
Sbjct: 191 GLPTHAALRGGGGGSEGGGGGARPSPPRARQPPS-GRPRPRRTRLLGSAER--HTGRAAL 247
Query: 241 QQRGGLPVQWSQGPRDLCWLRPTAGCNRGPGPRGCAKGSVG-----RGGAR 286
+ G L RP A RG A RGGAR
Sbjct: 248 ARHGQLS-------------RPHAAVRNSSRGRGAATSVSAAARPTRGGAR 285
Score = 30.0 bits (66), Expect = 2.6
Identities = 58/184 (31%), Positives = 69/184 (37%), Gaps = 43/184 (23%)
Query: 132 PWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAH 191
P AP+ P + GSP RR R+A G R PR G
Sbjct: 64 PTAPVSFSRIRRNPLRTQLSGSP-PRRPTSVLRLASPAGDLPRRPRPRAGGG-------- 114
Query: 192 AELLALERRLPEHSPLRALKPLAVGGPRGR-RAGR---LGS-LRRGLRLGRQRVQQ---- 242
HSP A+ + GG +GR R GR GS RRG L QRV+
Sbjct: 115 -----------RHSPRPAVGTIFRGGRKGRLREGRGAVRGSGKRRGWGLRPQRVRSRLAG 163
Query: 243 ----RGG--LPVQW-SQGPRDLCWLR---PTAGCNRGPGPRGCAKGSVGRGGARAAPNHT 292
RGG P W QG L + PT RG G G ++G G GGAR +P
Sbjct: 164 LGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGG--GGSEG--GGGGARPSPPRA 219
Query: 293 HVVP 296
P
Sbjct: 220 RQPP 223
>gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo
sapiens]
Length = 262
Score = 33.5 bits (75), Expect = 0.23
Identities = 44/136 (32%), Positives = 50/136 (36%), Gaps = 37/136 (27%)
Query: 151 RGSPG--ARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLR 208
RG+ G ARRL LP GG S R P W+SG RR P
Sbjct: 120 RGACGNTARRL-LPG-----GGRLRSPRDPAWESG---------------RRRPASGVRV 158
Query: 209 ALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRG------GLPVQWSQ----GPRDLC 258
L V GPRG R +LG G + Q R +W + GPR L
Sbjct: 159 ESGVLPVPGPRGSRLSKLGGPHARSPHGNRVPQARSPALRSLETAARWRKKQPLGPRRLG 218
Query: 259 WLRPTAGCNRGPGPRG 274
W P N PG RG
Sbjct: 219 WATP----NPLPGHRG 230
>gi|113423529 PREDICTED: hypothetical protein [Homo sapiens]
Length = 276
Score = 33.5 bits (75), Expect = 0.23
Identities = 61/256 (23%), Positives = 84/256 (32%), Gaps = 39/256 (15%)
Query: 14 KEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKRRREPGEGAAAPGM 73
++ ++ + L G+ GG R++ R + C+R + G G G
Sbjct: 35 QDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGR 94
Query: 74 VPAGDSRPLTALLACNLNPFYLLIRVAEPKTSPEALRLRLAGLKA-SPSFKDPESRFMEP 132
G C + R+ K +P AG + S SF P S P
Sbjct: 95 QDGGGEVGRAGRRCCRRHRRLRSSRLWSFKLTPPGRSCAGAGSRGESKSFPWPFSPSTLP 154
Query: 133 WAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHA 192
L G AG W S A LP R+ AR SG
Sbjct: 155 LPDSLPLPPSGGRAGPGWGDSHLAPAWGLPRRLPLLAAAR---------SG--------- 196
Query: 193 ELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSQ 252
AL P +PL +L GPR RR+ G R + + GG P+
Sbjct: 197 ---ALGGMFPTAAPLYSLPLFVSAGPRCRRSW-------GFRAPGAPLSRAGGTPL---- 242
Query: 253 GPRD------LCWLRP 262
GPR L W+RP
Sbjct: 243 GPRGRVCARRLRWVRP 258
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 33.1 bits (74), Expect = 0.30
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 106 PEALRLRLAGLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARV 165
P +R+ G++ +P DP+++ P + + G S G G R P A
Sbjct: 67 PPTRAIRMQGIRNTPG-GDPKAQACFPTSAANRSF-QPRSLGGSLAGIAGPRPSPCQAHD 124
Query: 166 AERGGA-RVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVG-GPRGRRA 223
ERGG R S R D G R+P PL L P A G GR +
Sbjct: 125 CERGGGGRPSHRAAAVDQGRP------------RPRVPRGQPLPGLHPSAAAPGVGGRAS 172
Query: 224 GRLGSLRRG 232
G G L G
Sbjct: 173 GAGGLLGEG 181
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.1 bits (74), Expect = 0.30
Identities = 69/258 (26%), Positives = 88/258 (34%), Gaps = 44/258 (17%)
Query: 64 PGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIRVAEPKTSPEALRLRLAGL------- 116
P EG A P + GD P N P ++ + KT +L LR GL
Sbjct: 98 PSEGRATPPLPHPGDHHPRHRK---NRGPSAGTSQLGK-KTQCRSLFLRTKGLCALLLEL 153
Query: 117 --KASPSFKDPESR--FMEPWAPLPLLVGEGTPAGSSWRGSPGAR---RLPLPARVA--- 166
+ P+ ++ R F P P+ +G P GS G R + PLP A
Sbjct: 154 PPRPPPNLQEGGQRAIFQRP----PVYLG-NKPTPPRQEGSFGGRPKSQPPLPQETAAPA 208
Query: 167 ---------ERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGG 217
R A SR GPR + + G A L L P HSP L G
Sbjct: 209 PQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPG--PAHSPAPPAPELREGR 266
Query: 218 PRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSQGPRDLCW-LRPTAGCNRGPGPRGCA 276
G AGR R Q ++ G V +G D +P A G R C
Sbjct: 267 APGSTAGRRPRPRE-----PQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCR 321
Query: 277 KGSVGRGGARAAPNH-TH 293
+ GG H TH
Sbjct: 322 RRRRRGGGGEGEGTHATH 339
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.1 bits (74), Expect = 0.30
Identities = 69/258 (26%), Positives = 88/258 (34%), Gaps = 44/258 (17%)
Query: 64 PGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIRVAEPKTSPEALRLRLAGL------- 116
P EG A P + GD P N P ++ + KT +L LR GL
Sbjct: 98 PSEGRATPPLPHPGDHHPRHRK---NRGPSAGTSQLGK-KTQCRSLFLRTKGLCALLLEL 153
Query: 117 --KASPSFKDPESR--FMEPWAPLPLLVGEGTPAGSSWRGSPGAR---RLPLPARVA--- 166
+ P+ ++ R F P P+ +G P GS G R + PLP A
Sbjct: 154 PPRPPPNLQEGGQRAIFQRP----PVYLG-NKPTPPRQEGSFGGRPKSQPPLPQETAAPA 208
Query: 167 ---------ERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGG 217
R A SR GPR + + G A L L P HSP L G
Sbjct: 209 PQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPG--PAHSPAPPAPELREGR 266
Query: 218 PRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSQGPRDLCW-LRPTAGCNRGPGPRGCA 276
G AGR R Q ++ G V +G D +P A G R C
Sbjct: 267 APGSTAGRRPRPRE-----PQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCR 321
Query: 277 KGSVGRGGARAAPNH-TH 293
+ GG H TH
Sbjct: 322 RRRRRGGGGEGEGTHATH 339
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.1 bits (74), Expect = 0.30
Identities = 69/258 (26%), Positives = 88/258 (34%), Gaps = 44/258 (17%)
Query: 64 PGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIRVAEPKTSPEALRLRLAGL------- 116
P EG A P + GD P N P ++ + KT +L LR GL
Sbjct: 98 PSEGRATPPLPHPGDHHPRHRK---NRGPSAGTSQLGK-KTQCRSLFLRTKGLCALLLEL 153
Query: 117 --KASPSFKDPESR--FMEPWAPLPLLVGEGTPAGSSWRGSPGAR---RLPLPARVA--- 166
+ P+ ++ R F P P+ +G P GS G R + PLP A
Sbjct: 154 PPRPPPNLQEGGQRAIFQRP----PVYLG-NKPTPPRQEGSFGGRPKSQPPLPQETAAPA 208
Query: 167 ---------ERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGG 217
R A SR GPR + + G A L L P HSP L G
Sbjct: 209 PQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPG--PAHSPAPPAPELREGR 266
Query: 218 PRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSQGPRDLCW-LRPTAGCNRGPGPRGCA 276
G AGR R Q ++ G V +G D +P A G R C
Sbjct: 267 APGSTAGRRPRPRE-----PQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCR 321
Query: 277 KGSVGRGGARAAPNH-TH 293
+ GG H TH
Sbjct: 322 RRRRRGGGGEGEGTHATH 339
>gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens]
Length = 104
Score = 33.1 bits (74), Expect = 0.30
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 172 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 211
R S+ P W SG + GG+ AEL+ L +RL E++ L+A++
Sbjct: 29 RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69
>gi|76781485 vascular endothelial growth factor A isoform f
precursor [Homo sapiens]
Length = 327
Score = 32.7 bits (73), Expect = 0.39
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 141 GEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERR 200
GE P+G++ S G R P P E + RGP+W G + G E
Sbjct: 72 GEAEPSGAARSASSG-REEPQPEE-GEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADS 129
Query: 201 LPEHSPLRALKPLAVGGPRGRRAGRLGSLRRG 232
P RA + LA RG R R G+ G
Sbjct: 130 AP---AARAPQALARASGRGGRVARRGAEESG 158
Score = 29.3 bits (64), Expect = 4.4
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 15/141 (10%)
Query: 53 EALSRRKRRREPGEGAAAPGMVPAGDSRPL-TALLACNLNPFYLLIRVAEPKTSPEALRL 111
+A + R + EP G G+ G + L LL C+ ++R E + S A
Sbjct: 25 DAAASRGQGPEPAPGGGVEGVGARGVALKLFVQLLGCSRFGG-AVVRAGEAEPSGAARSA 83
Query: 112 RLAGLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRG--------SPGARRLPLPA 163
+ P + E E P L G SW G +P AR A
Sbjct: 84 SSGREEPQPEEGEEEEEKEEERGPQWRL---GARKPGSWTGEAAVCADSAPAARAPQALA 140
Query: 164 RVAERGGARVSRRGPRWDSGP 184
R + RGG RV+RRG +SGP
Sbjct: 141 RASGRGG-RVARRGAE-ESGP 159
>gi|76781484 vascular endothelial growth factor A isoform e
precursor [Homo sapiens]
Length = 354
Score = 32.7 bits (73), Expect = 0.39
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 141 GEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERR 200
GE P+G++ S G R P P E + RGP+W G + G E
Sbjct: 72 GEAEPSGAARSASSG-REEPQPEE-GEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADS 129
Query: 201 LPEHSPLRALKPLAVGGPRGRRAGRLGSLRRG 232
P RA + LA RG R R G+ G
Sbjct: 130 AP---AARAPQALARASGRGGRVARRGAEESG 158
Score = 29.3 bits (64), Expect = 4.4
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 15/141 (10%)
Query: 53 EALSRRKRRREPGEGAAAPGMVPAGDSRPL-TALLACNLNPFYLLIRVAEPKTSPEALRL 111
+A + R + EP G G+ G + L LL C+ ++R E + S A
Sbjct: 25 DAAASRGQGPEPAPGGGVEGVGARGVALKLFVQLLGCSRFGG-AVVRAGEAEPSGAARSA 83
Query: 112 RLAGLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRG--------SPGARRLPLPA 163
+ P + E E P L G SW G +P AR A
Sbjct: 84 SSGREEPQPEEGEEEEEKEEERGPQWRL---GARKPGSWTGEAAVCADSAPAARAPQALA 140
Query: 164 RVAERGGARVSRRGPRWDSGP 184
R + RGG RV+RRG +SGP
Sbjct: 141 RASGRGG-RVARRGAE-ESGP 159
>gi|76781483 vascular endothelial growth factor A isoform d
precursor [Homo sapiens]
Length = 371
Score = 32.7 bits (73), Expect = 0.39
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 141 GEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERR 200
GE P+G++ S G R P P E + RGP+W G + G E
Sbjct: 72 GEAEPSGAARSASSG-REEPQPEE-GEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADS 129
Query: 201 LPEHSPLRALKPLAVGGPRGRRAGRLGSLRRG 232
P RA + LA RG R R G+ G
Sbjct: 130 AP---AARAPQALARASGRGGRVARRGAEESG 158
Score = 29.3 bits (64), Expect = 4.4
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 15/141 (10%)
Query: 53 EALSRRKRRREPGEGAAAPGMVPAGDSRPL-TALLACNLNPFYLLIRVAEPKTSPEALRL 111
+A + R + EP G G+ G + L LL C+ ++R E + S A
Sbjct: 25 DAAASRGQGPEPAPGGGVEGVGARGVALKLFVQLLGCSRFGG-AVVRAGEAEPSGAARSA 83
Query: 112 RLAGLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRG--------SPGARRLPLPA 163
+ P + E E P L G SW G +P AR A
Sbjct: 84 SSGREEPQPEEGEEEEEKEEERGPQWRL---GARKPGSWTGEAAVCADSAPAARAPQALA 140
Query: 164 RVAERGGARVSRRGPRWDSGP 184
R + RGG RV+RRG +SGP
Sbjct: 141 RASGRGG-RVARRGAE-ESGP 159
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,350,366
Number of Sequences: 37866
Number of extensions: 847006
Number of successful extensions: 3614
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 3431
Number of HSP's gapped (non-prelim): 371
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.