Guide to the Human Genome
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Name: VEGFA Sequence: fasta or formatted (327aa) NCBI GI: 76781485
Description:

vascular endothelial growth factor A isoform f precursor

Referenced in:

Platelets and Megakaryocytes
Receptor Tyrosine Kinases

Other entries for this name:
alt prot [412aa] vascular endothelial growth factor A isoform a precursor
alt prot [395aa] vascular endothelial growth factor A isoform b precursor
alt prot [389aa] vascular endothelial growth factor A isoform c precursor
alt prot [371aa] vascular endothelial growth factor A isoform d precursor
alt prot [354aa] vascular endothelial growth factor A isoform e precursor
alt prot [371aa] vascular endothelial growth factor A isoform g precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         35           3
 C cysteine            3.4         11           2
 D aspartate           3.1         10           1
 E glutamate          10.1         33           5
 F phenylalanine       2.1          7           1
 G glycine            11.0         36           3
 H histidine           3.4         11           2
 I isoleucine          2.4          8           1
 K lysine              3.7         12           2
 L leucine             5.8         19           3
 M methionine          2.4          8           1
 N asparagine          1.5          5           1
 P proline             8.0         26           2
 Q glutamine           4.6         15           1
 R arginine            9.5         31           3
 S serine              7.3         24           2
 T threonine           2.8          9           1
 V valine              4.9         16           2
 W tryptophan          1.5          5           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vascular endothelial growth factor A isoform f precu... 
VEGFA                 0.979   vascular endothelial growth factor A isoform c precu...
VEGFA                 0.979   vascular endothelial growth factor A isoform b precu...
VEGFA                 0.979   vascular endothelial growth factor A isoform a precu...
VEGFA                 0.976   vascular endothelial growth factor A isoform e precu...
VEGFA                 0.976   vascular endothelial growth factor A isoform d precu...
VEGFA                 0.976   vascular endothelial growth factor A isoform g precu...
PGF                   0.158   placental growth factor, vascular endothelial growth...
VEGFB                 0.120   vascular endothelial growth factor B 
VEGFC                 0.076   vascular endothelial growth factor C preproprotein [H...
FIGF                  0.065   vascular endothelial growth factor D preproprotein [H...
LOC100293935          0.030   PREDICTED: hypothetical protein 
LOC100287289          0.030   PREDICTED: hypothetical protein 
LOC100287289          0.030   PREDICTED: hypothetical protein XP_002343656 
COL1A1                0.029   alpha 1 type I collagen preproprotein 
PANK1                 0.029   pantothenate kinase 1 isoform alpha 
COL6A1                0.029   collagen, type VI, alpha 1 precursor 
ADAMTS19              0.029   ADAM metallopeptidase with thrombospondin type 1 mo...
TAF4                  0.027   TBP-associated factor 4 
COL2A1                0.027   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.027   collagen, type II, alpha 1 isoform 2 precursor [Hom...
BASP1                 0.026   brain abundant, membrane attached signal protein 1 [...
PDGFB                 0.026   platelet-derived growth factor beta isoform 2 prepro...
PDGFB                 0.026   platelet-derived growth factor beta isoform 1 preprop...
LOC100133264          0.024   PREDICTED: hypothetical protein 
LOC100133264          0.024   PREDICTED: hypothetical protein 
PDGFC                 0.024   platelet-derived growth factor C precursor 
CIC                   0.023   capicua homolog 
PDGFA                 0.023   platelet-derived growth factor alpha isoform 1 prepr...
COL5A2                0.021   alpha 2 type V collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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