Guide to the Human Genome
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Name: LOC100292376 Sequence: fasta or formatted (328aa) NCBI GI: 239753377
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         30           3
 C cysteine            1.5          5           1
 D aspartate           3.4         11           1
 E glutamate           4.0         13           4
 F phenylalanine       1.5          5           1
 G glycine            12.2         40           1
 H histidine           3.7         12           1
 I isoleucine          2.1          7           1
 K lysine              2.4          8           1
 L leucine            10.1         33           2
 M methionine          0.9          3           1
 N asparagine          2.1          7           1
 P proline             8.5         28           1
 Q glutamine           7.0         23           3
 R arginine            7.6         25           2
 S serine             11.9         39           3
 T threonine           3.0         10           1
 V valine              6.4         21           2
 W tryptophan          1.5          5           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290765          1.000   PREDICTED: hypothetical protein XP_002346483 
LOC100287864          0.857   PREDICTED: hypothetical protein XP_002342323 
WDR33                 0.030   WD repeat domain 33 isoform 1 
PLEKHG4B              0.026   pleckstrin homology domain containing, family G (wi...
COL12A1               0.025   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.025   collagen, type XII, alpha 1 long isoform precursor [...
MGC50722              0.022   hypothetical protein LOC399693 
LOC100292217          0.022   PREDICTED: hypothetical protein 
LOC100288033          0.022   PREDICTED: hypothetical protein 
LOC100288033          0.022   PREDICTED: hypothetical protein XP_002343859 
LOC100292865          0.019   PREDICTED: hypothetical protein 
LOC729417             0.017   PREDICTED: hypothetical protein 
LOC729417             0.017   PREDICTED: hypothetical protein 
LOC729417             0.017   PREDICTED: hypothetical protein 
UMODL1                0.017   uromodulin-like 1 isoform 2 precursor 
SFPQ                  0.016   splicing factor proline/glutamine rich (polypyrimidin...
RHOXF2                0.016   Rhox homeobox family, member 2 
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
BSN                   0.016   bassoon protein 
COL3A1                0.016   collagen type III alpha 1 preproprotein 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
SCML4                 0.016   sex comb on midleg-like 4 
MTHFD1L               0.014   methylenetetrahydrofolate dehydrogenase (NADP+ depen...
KIAA0284              0.014   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.014   hypothetical protein LOC283638 isoform 1 
C9orf86               0.012   Rab-like GTP-binding protein 1 isoform 1 
RHOXF2B               0.012   Rhox homeobox family, member 2B 
FGA                   0.012   fibrinogen, alpha polypeptide isoform alpha prepropr...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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