Guide to the Human Genome
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Name: RHOXF2 Sequence: fasta or formatted (288aa) NCBI GI: 14249119
Description:

Rhox homeobox family, member 2

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         23           2
 C cysteine            0.7          2           1
 D aspartate           4.9         14           2
 E glutamate          10.4         30           4
 F phenylalanine       5.2         15           1
 G glycine             9.0         26           3
 H histidine           1.7          5           1
 I isoleucine          1.7          5           1
 K lysine              2.8          8           1
 L leucine             8.3         24           2
 M methionine          4.5         13           1
 N asparagine          2.8          8           1
 P proline            10.8         31           3
 Q glutamine           6.9         20           2
 R arginine            4.9         14           3
 S serine              6.6         19           3
 T threonine           3.1          9           1
 V valine              5.2         15           1
 W tryptophan          1.4          4           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rhox homeobox family, member 2 
RHOXF2B               0.991   Rhox homeobox family, member 2B 
ESX1                  0.160   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
PRRX1                 0.100   paired mesoderm homeobox 1 isoform pmx-1a 
PRRX1                 0.100   paired mesoderm homeobox 1 isoform pmx-1b 
PRRX2                 0.098   paired related homeobox 2 
RHOXF1                0.097   Rhox homeobox family, member 1 
PAX6                  0.091   paired box gene 6 isoform a 
PAX6                  0.091   paired box gene 6 isoform b 
PAX6                  0.091   paired box gene 6 isoform a 
ARX                   0.088   aristaless related homeobox 
SHOX2                 0.086   short stature homeobox 2 isoform a 
RAX2                  0.086   retina and anterior neural fold homeobox 2 
RAX                   0.086   retina and anterior neural fold homeobox 
OTP                   0.084   PREDICTED: orthopedia homeobox 
PHOX2A                0.084   paired-like homeobox 2a 
OTP                   0.084   orthopedia homeobox 
ALX4                  0.079   aristaless-like homeobox 4 
PITX1                 0.079   paired-like homeodomain transcription factor 1 [Hom...
ALX1                  0.077   cartilage paired-class homeoprotein 1 
LOC100291814          0.077   PREDICTED: similar to Rhox homeobox family, member ...
PAX7                  0.076   paired box 7 isoform 1 
PAX7                  0.076   paired box 7 isoform 2 
PAX7                  0.076   paired box 7 isoform 3 
PROP1                 0.074   PROP paired-like homeobox 1 
PHOX2B                0.074   paired-like homeobox 2b 
PITX3                 0.072   paired-like homeodomain 3 
PITX2                 0.072   paired-like homeodomain transcription factor 2 isofo...
ALX3                  0.072   aristaless-like homeobox 3 
VAX2                  0.072   ventral anterior homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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