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Search of human proteins with 239753134
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753134 PREDICTED: hypothetical protein [Homo sapiens]
(85 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753134 PREDICTED: hypothetical protein [Homo sapiens] 173 2e-44
gi|239741567 PREDICTED: hypothetical protein XP_002342238 [Homo ... 173 2e-44
gi|115511036 alpha-kinase 3 [Homo sapiens] 39 7e-04
gi|239756804 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo ... 38 0.002
gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo ... 38 0.002
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 37 0.003
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.004
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 36 0.006
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 36 0.007
gi|239741776 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 35 0.017
gi|169164282 PREDICTED: hypothetical protein [Homo sapiens] 34 0.022
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 34 0.022
gi|239747895 PREDICTED: hypothetical protein [Homo sapiens] 34 0.022
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 34 0.022
gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens] 34 0.022
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 34 0.028
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 34 0.028
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 33 0.037
gi|239755739 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|239750250 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ... 33 0.048
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 33 0.063
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 33 0.063
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 32 0.083
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.083
>gi|239753134 PREDICTED: hypothetical protein [Homo sapiens]
Length = 85
Score = 173 bits (439), Expect = 2e-44
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MAVGGARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSR 60
MAVGGARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSR
Sbjct: 1 MAVGGARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSR 60
Query: 61 RAPGVGRGRSGRGAAAGPGAALAQG 85
RAPGVGRGRSGRGAAAGPGAALAQG
Sbjct: 61 RAPGVGRGRSGRGAAAGPGAALAQG 85
>gi|239741567 PREDICTED: hypothetical protein XP_002342238 [Homo
sapiens]
Length = 85
Score = 173 bits (439), Expect = 2e-44
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MAVGGARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSR 60
MAVGGARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSR
Sbjct: 1 MAVGGARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSR 60
Query: 61 RAPGVGRGRSGRGAAAGPGAALAQG 85
RAPGVGRGRSGRGAAAGPGAALAQG
Sbjct: 61 RAPGVGRGRSGRGAAAGPGAALAQG 85
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 39.3 bits (90), Expect = 7e-04
Identities = 29/77 (37%), Positives = 30/77 (38%), Gaps = 23/77 (29%)
Query: 4 GGARAGE-PGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRA 62
G A AG PGA G WR SA P G GG +G SRRA
Sbjct: 171 GAAAAGRGPGA------GAWRTGEAAASAGPAVGEGGAMG----------------SRRA 208
Query: 63 PGVGRGRSGRGAAAGPG 79
P G G GR A G G
Sbjct: 209 PSRGWGAGGRSGAGGDG 225
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 35 AGPGGVLGGSRQAKSLHGRPRASLSRRAPGVGRGRSGRGAAAGPGAALAQG 85
A P + G+RQ R A+ + R PG G R+G AAA G A+ +G
Sbjct: 156 ARPPAINRGARQP-----RAGAAAAGRGPGAGAWRTGE-AAASAGPAVGEG 200
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/57 (33%), Positives = 23/57 (40%)
Query: 24 ERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPGVGRGRSGRGAAAGPGA 80
E+ R P + G VL + RP L R +GR G G AGPGA
Sbjct: 69 EQAGREPGPGSSTKGPVLHDQDTRCAFLPRPPGPLQTRRYCRHQGRQGSGLGAGPGA 125
>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 38.1 bits (87), Expect = 0.002
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 31 APPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPGVG--RGRSGRGAAAGPGAA 81
A + GPGG G +A+ H RPR R A G G RGR+G A G+A
Sbjct: 161 AQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSA 213
>gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
sapiens]
Length = 236
Score = 38.1 bits (87), Expect = 0.002
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 31 APPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPGVG--RGRSGRGAAAGPGAA 81
A + GPGG G +A+ H RPR R A G G RGR+G A G+A
Sbjct: 161 AQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSA 213
>gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
sapiens]
Length = 236
Score = 38.1 bits (87), Expect = 0.002
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 31 APPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPGVG--RGRSGRGAAAGPGAA 81
A + GPGG G +A+ H RPR R A G G RGR+G A G+A
Sbjct: 161 AQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSA 213
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 1 MAVGGARAGEPGAQGIDLEGQWRERRVRGSAP------PQAGPGGVLGGSRQAKSLHGRP 54
M+ GG G PG G + E G +GPGG GG ++ G
Sbjct: 1 MSGGGPSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGKASVGAMGGGV 60
Query: 55 RASLSRRAPGVGRGRSGRGAAAGPGA 80
AS S G G G SG G + GPGA
Sbjct: 61 GASSS----GGGPGGSGGGGSGGPGA 82
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 36.6 bits (83), Expect = 0.004
Identities = 35/87 (40%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 8 AGEPGAQGI--DL-----------EGQWRERRVRGSAPPQAGPGGVLG--GSRQAKSLHG 52
AG+PG QG+ DL G ER V+G P AGP G G G+ AK G
Sbjct: 655 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGP-AGPRGANGAPGNDGAKGDAG 713
Query: 53 RPRASLSRRAPGVGRGRSGRGAAAGPG 79
P A S+ APG+ RGAA PG
Sbjct: 714 APGAPGSQGAPGLQGMPGERGAAGLPG 740
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 36.2 bits (82), Expect = 0.006
Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 5 GARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLG-----GSRQAKSLHGRPRASLS 59
GARAGE G W+ R S + PG V G G+ QA+ GR A L
Sbjct: 441 GARAGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARL- 499
Query: 60 RRAPGVGRGRSGRGAAAGPGAALAQG 85
RR G+ GR G G G GA+ +G
Sbjct: 500 RRGRGM-PGRVGNGVGEGRGASEPEG 524
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 35.8 bits (81), Expect = 0.007
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 10 EPGAQGIDLEGQ----WRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPGV 65
+ G G L+G R RR RG+ P+ PGG GG R+ S+ RP + +P
Sbjct: 241 DAGGAGRPLDGYISALLRRRRRRGAGQPRTSPGGADGGPRRQNSVRQRPPDA----SPSP 296
Query: 66 GRGRSGR 72
G R R
Sbjct: 297 GSARPAR 303
>gi|239741776 PREDICTED: hypothetical protein [Homo sapiens]
Length = 78
Score = 35.0 bits (79), Expect = 0.013
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 14 QGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPGVGRGRSGR- 72
Q D +G+ + R AP +AG G L GSR L + S RAP RG G+
Sbjct: 4 QPADEKGERKGGRRALCAPARAGGGARLEGSRTLHRLAAAAASRQSSRAPSEARGWEGKE 63
Query: 73 -GAAAGPGAALA 83
G G ALA
Sbjct: 64 GGVGRSQGCALA 75
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 34.7 bits (78), Expect = 0.017
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 5 GARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPG 64
GAR GEP Q + RR R P+ P G + A + +G P S SRRAPG
Sbjct: 109 GARRGEPPQQ--------QPRRRRREKEPEEEPAGAAARAADA-ACNGLP-GSDSRRAPG 158
Query: 65 VGRGRSGRGAAAGPGAALA 83
G G G P A A
Sbjct: 159 KGGGSKGSPGQRPPVPAAA 177
>gi|169164282 PREDICTED: hypothetical protein [Homo sapiens]
Length = 78
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 14 QGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPGVGRGRSGR- 72
Q D +G+ + R AP +AG G L GSR L + S RAP RG G+
Sbjct: 4 QPADEKGERKGGRRALCAPARAGGGARLEGSRTLHRLAAAAASRQSSRAPSEARGWEGKE 63
Query: 73 -GAAAGPGAALA 83
G G ALA
Sbjct: 64 GGVGRSQGYALA 75
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 20 GQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAP-GVGRGRSGRGAAAGP 78
G +R RR R P + GP G G Q S P A+ R AP G G GR A P
Sbjct: 418 GNYRRRR-RRRGPKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGREPPASP 476
>gi|239747895 PREDICTED: hypothetical protein [Homo sapiens]
Length = 78
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 14 QGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPGVGRGRSGR- 72
Q D +G+ + R AP +AG G L GSR L + S RAP RG G+
Sbjct: 4 QPADEKGERKGGRRALCAPARAGGGARLEGSRTLHRLAAAAASRQSSRAPSEARGWEGKE 63
Query: 73 -GAAAGPGAALA 83
G G ALA
Sbjct: 64 GGVGRSQGYALA 75
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 20 GQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAP-GVGRGRSGRGAAAGP 78
G +R RR R P + GP G G Q S P A+ R AP G G GR A P
Sbjct: 481 GNYRRRR-RRRGPKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGREPPASP 539
>gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 387
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 20 GQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAP-GVGRGRSGRGAAAGP 78
G +R RR R P + GP G G Q S P A+ R AP G G GR A P
Sbjct: 185 GNYRRRR-RRRGPKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGREPPASP 243
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 33.9 bits (76), Expect = 0.028
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 3 VGGARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPG-GVLGGSRQAKSLHGRPRASLSRR 61
VG G GA+G R RG+APP+ G GG A+ + G + +R
Sbjct: 458 VGARGRGGRGARGA------APSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQR 511
Query: 62 APGVGRGRSGRGAAAG 77
GV R GRG G
Sbjct: 512 GRGVRGARGGRGGNVG 527
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 33.9 bits (76), Expect = 0.028
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 3 VGGARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPG-GVLGGSRQAKSLHGRPRASLSRR 61
VG G GA+G R RG+APP+ G GG A+ + G + +R
Sbjct: 493 VGARGRGGRGARGA------APSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQR 546
Query: 62 APGVGRGRSGRGAAAG 77
GV R GRG G
Sbjct: 547 GRGVRGARGGRGGNVG 562
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 33.5 bits (75), Expect = 0.037
Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 20 GQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPGVGRGR---------S 70
G+ E R GS G G L G R L GR R R G GRGR +
Sbjct: 67 GRRTEERPSGSRLGDRGRGRALPGGR----LGGRGRGRAPERVGGRGRGRGTAAPRAAPA 122
Query: 71 GRGAAAGPGAALAQG 85
RG+ GP +A G
Sbjct: 123 ARGSRPGPAGTMAAG 137
>gi|239755739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 33.1 bits (74), Expect = 0.048
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 10 EPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHG-RPRASLSRRAPGVGRG 68
+PG G +++G R G GPG V +A+ G R R + R P RG
Sbjct: 22 QPGWGGEEVQGLARAGLAAGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARG 81
Query: 69 RSGRGAAAGPGAAL 82
GA AGP A L
Sbjct: 82 ----GARAGPDAQL 91
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 26 RVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRR-APGVGRGRSGRGAAAGPG 79
R AP Q P GG R ++ A +R APG+ RGR GR AAAG G
Sbjct: 136 RSHWQAPRQGWPAQEGGGRRPSRREEAAALAGGGKRTAPGL-RGRGGR-AAAGQG 188
>gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 33.1 bits (74), Expect = 0.048
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 10 EPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHG-RPRASLSRRAPGVGRG 68
+PG G +++G R G GPG V +A+ G R R + R P RG
Sbjct: 22 QPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARG 81
Query: 69 RSGRGAAAGPGAAL 82
GA AGP A L
Sbjct: 82 ----GARAGPDAQL 91
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 26 RVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPGVGRGRSGRGAAAGPG 79
R AP Q P GG R ++ A +R RGR GR AAAG G
Sbjct: 136 RSHWQAPRQGWPAQEGGGRRPSRREEAAALAGGGKRTAPGRRGRGGR-AAAGQG 188
>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 33.1 bits (74), Expect = 0.048
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 9 GEPGAQGIDLEG---QWRERRVRGSAPPQAGPGGVLGGSRQA--KSLHGRPRASLSRRAP 63
G PG +G G Q RE+R G+ P GPG SRQ LHGR + +
Sbjct: 125 GVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG-----SRQPLPAGLHGRRKVGSAPDRH 179
Query: 64 GVGRGRSG-RG--AAAGP 78
G+G G +G RG A GP
Sbjct: 180 GLGAGSAGARGNKAVVGP 197
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 4 GGARAGEPGAQGID-LEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRA 62
GGARA PG L RR GSAP + G G G+R K++ G RR
Sbjct: 147 GGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRL 206
Query: 63 PGVGRGRSG 71
R G
Sbjct: 207 HSGSESRLG 215
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 33.1 bits (74), Expect = 0.048
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 28 RGSAPPQAGPG-----GVLGGS-RQAKSLHGRPRASLSRRAPGVGRGRSGRGAAAGPG 79
RG AG G GVLGG+ RQ ++L G+ L++ G G R GRGA G
Sbjct: 127 RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
sapiens]
Length = 242
Score = 33.1 bits (74), Expect = 0.048
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 9 GEPGAQGIDLEG---QWRERRVRGSAPPQAGPGGVLGGSRQA--KSLHGRPRASLSRRAP 63
G PG +G G Q RE+R G+ P GPG SRQ LHGR + +
Sbjct: 125 GVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG-----SRQPLPAGLHGRRKVGSAPDRH 179
Query: 64 GVGRGRSG-RG--AAAGP 78
G+G G +G RG A GP
Sbjct: 180 GLGAGSAGARGNKAVVGP 197
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 4 GGARAGEPGAQGID-LEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRA 62
GGARA PG L RR GSAP + G G G+R K++ G RR
Sbjct: 147 GGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRL 206
Query: 63 PGVGRGRSG 71
R G
Sbjct: 207 HSGSESRLG 215
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 33.1 bits (74), Expect = 0.048
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 28 RGSAPPQAGPG-----GVLGGS-RQAKSLHGRPRASLSRRAPGVGRGRSGRGAAAGPG 79
RG AG G GVLGG+ RQ ++L G+ L++ G G R GRGA G
Sbjct: 127 RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 32.7 bits (73), Expect = 0.063
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 9 GEPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRRAPGVGRG 68
G PG G ++G +R RG PP G GG+ G L G P PG +G
Sbjct: 1389 GPPGLPGTAMKGDKGDRGERG--PPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPG-KKG 1445
Query: 69 RSGRGAAAGPG 79
G PG
Sbjct: 1446 EKGDSEDGAPG 1456
Score = 29.3 bits (64), Expect = 0.70
Identities = 30/88 (34%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 4 GGARAGEPGAQGIDLEGQWRERRVRGSAPPQA-GPGGVLG-----GSRQAKSLHGRPRAS 57
G + G PG G G E+ RG PP A GP G G G K G P +
Sbjct: 1448 GDSEDGAPGLPG--QPGSPGEQGPRG--PPGAIGPKGDRGFPGPLGEAGEKGERGPPGPA 1503
Query: 58 LSRRAPGVGRGRSGRGAAAGPGAALAQG 85
SR PGV +G PG QG
Sbjct: 1504 GSRGLPGVAGRPGAKGPEGPPGPTGRQG 1531
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 9 GEPGAQGIDLEGQWRERRV------RGSAPPQAGPGGV-LGGSRQAKSLHGRPRASLSRR 61
GEPG+ G +G +R V RG P+ G L G R G+P R
Sbjct: 2117 GEPGSNGD--QGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRG 2174
Query: 62 APGVGRGRSGRGAAAGPGAA 81
PG G G PG A
Sbjct: 2175 PPGPVGGHGDPGPPGAPGLA 2194
Score = 26.6 bits (57), Expect = 4.5
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 9 GEPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLG--GSRQAKSLHGRPRASL-------- 58
GEPGA G + G+ R P +GP G G G + G P ++
Sbjct: 1347 GEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRG 1406
Query: 59 SRRAPGVGRGRSGRGAAAGPG 79
R PG G G G PG
Sbjct: 1407 ERGPPGPGEGGIAPGEPGLPG 1427
Score = 26.6 bits (57), Expect = 4.5
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 9 GEPGAQGI-DLEGQWRERRVRGSAPP--QAGPGGVLG-----GSRQAKSLHGRPRASLSR 60
G PG QG G + RG P +AG G G GSR + GRP A
Sbjct: 1462 GSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPE 1521
Query: 61 RAPG-VGR-------GRSGRGAAAGPGAALAQG 85
PG GR GR G A GP A +G
Sbjct: 1522 GPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKG 1554
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 32.7 bits (73), Expect = 0.063
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 2 AVGGARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPGGVLGGSRQAKSLHG-RPRASLSR 60
A ARAG A + R G+AP AGPGG G+ +A+ G R
Sbjct: 1357 AADAARAGGKEAPRAAAGSELCRREGPGAAPAFAGPGGGGSGALEAEGRAGARAGPRPGP 1416
Query: 61 RAPGVGRGRSGRGAAAGPG 79
R PG G R AA PG
Sbjct: 1417 RPPG---GAPARKAAVAPG 1432
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 32.3 bits (72), Expect = 0.083
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 3 VGGARAGEPGAQGIDLEGQWRERRVRGSAPPQAGPG-GVLGGSRQAKSLHGRPRASLSRR 61
VG G GA+G R RG+APP+ G GG A+ + G +R
Sbjct: 493 VGARGRGGRGARGA------APSRGRGAAPPRGRAGYSQRGGPGSARGVRG------ARG 540
Query: 62 APGVGRGRSGRGAAAGP 78
RGR G+G AGP
Sbjct: 541 GAQQQRGRGGKGVEAGP 557
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 32.3 bits (72), Expect = 0.083
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 30 SAPPQAGPGGVLG--GSRQAKSLHGRPRASLSRRAPGVGRGRSGRGAAAGPGAALAQ 84
SAPP A P R L RP+ S +R G GR GAAA P LAQ
Sbjct: 120 SAPPAAAPAAPAQPPAPRPESQLSDRPQ-SWEQRPRGPGRSARSAGAAAPPAGGLAQ 175
Score = 26.2 bits (56), Expect = 5.9
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 8 AGEPGAQGIDLEGQWRER-----RVRGSAPPQAGPGGVLGGSRQAKSLHGRPRASLSRR 61
A P +Q D W +R R SA A P G L +RQA+ R A+L+ R
Sbjct: 135 APRPESQLSDRPQSWEQRPRGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGR 193
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,452,793
Number of Sequences: 37866
Number of extensions: 247747
Number of successful extensions: 1836
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 277
Number of HSP's that attempted gapping in prelim test: 1527
Number of HSP's gapped (non-prelim): 574
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.