Guide to the Human Genome
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Name: LOC100290831 Sequence: fasta or formatted (236aa) NCBI GI: 239751298
Description:

PREDICTED: hypothetical protein XP_002347799

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         35           3
 C cysteine            1.7          4           1
 D aspartate           1.7          4           1
 E glutamate           2.5          6           1
 F phenylalanine       2.1          5           1
 G glycine            17.4         41           2
 H histidine           5.5         13           1
 I isoleucine          1.3          3           1
 K lysine              0.8          2           1
 L leucine            11.9         28           3
 M methionine          0.4          1           1
 N asparagine          0.0          0           0
 P proline             5.5         13           2
 Q glutamine           6.4         15           3
 R arginine           12.3         29           3
 S serine              5.9         14           2
 T threonine           4.2         10           2
 V valine              3.8          9           1
 W tryptophan          1.7          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347799 
LOC100293136          1.000   PREDICTED: hypothetical protein 
LOC100287562          1.000   PREDICTED: hypothetical protein XP_002343591 
POU3F1                0.050   POU domain, class 3, transcription factor 1 
LOC100131774          0.044   PREDICTED: hypothetical protein 
C1orf77               0.041   small protein rich in arginine and glycine 
FUS                   0.037   fusion (involved in t(12;16) in malignant liposarcoma...
COL2A1                0.037   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.037   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A2                0.037   alpha 2 type I collagen 
COL6A6                0.037   collagen type VI alpha 6 
LOC100131244          0.037   PREDICTED: similar to kinase D-interacting substrat...
LOC100131244          0.037   PREDICTED: similar to kinase D-interacting substrat...
LOC100131774          0.037   PREDICTED: hypothetical protein 
LOC100131244          0.037   PREDICTED: similar to kinase D-interacting substrat...
PPP1R10               0.035   protein phosphatase 1, regulatory subunit 10 
LOC100131851          0.035   PREDICTED: hypothetical protein 
LOC100128511          0.035   PREDICTED: hypothetical protein 
LOC100128511          0.035   PREDICTED: hypothetical protein 
LOC100128511          0.035   PREDICTED: hypothetical protein 
MYOZ1                 0.033   myozenin 1 
COL11A1               0.031   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.031   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.031   alpha 1 type XI collagen isoform A preproprotein [Ho...
LOC100131851          0.031   PREDICTED: hypothetical protein 
LOC100131774          0.031   PREDICTED: hypothetical protein 
LOC100290812          0.031   PREDICTED: hypothetical protein XP_002347678 
LOC100130751          0.031   PREDICTED: hypothetical protein 
LOC100288205          0.031   PREDICTED: hypothetical protein XP_002343496 
RFXAP                 0.031   regulatory factor X-associated protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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