Guide to the Human Genome
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Name: LOC100130819 Sequence: fasta or formatted (78aa) NCBI GI: 239747895
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {78aa} PREDICTED: hypothetical protein
alt prot {78aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            19.2         15           5
 C cysteine            1.3          1           1
 D aspartate           1.3          1           1
 E glutamate           7.7          6           1
 F phenylalanine       0.0          0           0
 G glycine            17.9         14           3
 H histidine           1.3          1           1
 I isoleucine          0.0          0           0
 K lysine              3.8          3           1
 L leucine             9.0          7           2
 M methionine          1.3          1           1
 N asparagine          0.0          0           0
 P proline             3.8          3           1
 Q glutamine           5.1          4           1
 R arginine           14.1         11           2
 S serine              9.0          7           2
 T threonine           1.3          1           1
 V valine              1.3          1           1
 W tryptophan          1.3          1           1
 Y tyrosine            1.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130819          1.000   PREDICTED: hypothetical protein 
LOC100130819          0.970   PREDICTED: hypothetical protein 
LOC100131320          0.326   PREDICTED: hypothetical protein isoform 1 
LOC100292412          0.068   PREDICTED: hypothetical protein 
LOC100288662          0.068   PREDICTED: hypothetical protein XP_002342238 
LOC100289316          0.053   PREDICTED: hypothetical protein 
LOC100289316          0.053   PREDICTED: hypothetical protein XP_002343619 
SHC3                  0.053   src homology 2 domain-containing transforming prote...
LOC339192             0.053   PREDICTED: hypothetical protein 
LOC339192             0.053   PREDICTED: hypothetical protein 
LOC339192             0.053   PREDICTED: hypothetical protein 
LOC100288496          0.053   PREDICTED: hypothetical protein XP_002342747 
LOC100290274          0.053   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.053   PREDICTED: hypothetical protein XP_002342846 
LOC646509             0.053   PREDICTED: hypothetical protein 
RFX5                  0.038   regulatory factor X, 5 
RFX5                  0.038   regulatory factor X, 5 
LOC100293129          0.038   PREDICTED: hypothetical protein 
LOC728806             0.038   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
LOC100294345          0.038   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
CABP1                 0.038   calcium binding protein 1 isoform 3 
LOC100292150          0.038   PREDICTED: hypothetical protein 
LOC100290302          0.038   PREDICTED: hypothetical protein XP_002346480 
LOC100287337          0.038   PREDICTED: hypothetical protein XP_002342320 
MARCKS                0.038   myristoylated alanine-rich protein kinase C substra...
LOC728767             0.030   PREDICTED: hypothetical protein 
LOC728767             0.030   PREDICTED: hypothetical protein 
LOC100292805          0.030   PREDICTED: hypothetical protein 
LOC100290682          0.030   PREDICTED: hypothetical protein XP_002348157 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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