Guide to the Human Genome
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Name: LRRC38 Sequence: fasta or formatted (254aa) NCBI GI: 239752702
Description:

PREDICTED: leucine rich repeat containing 38, partial

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [408aa] PREDICTED: leucine rich repeat containing 38
alt prot [408aa] PREDICTED: leucine rich repeat containing 38
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         21           2
 C cysteine            3.1          8           1
 D aspartate           8.3         21           2
 E glutamate           6.3         16           2
 F phenylalanine       6.3         16           2
 G glycine             4.7         12           1
 H histidine           0.8          2           1
 I isoleucine          4.7         12           3
 K lysine              2.8          7           1
 L leucine            15.7         40           2
 M methionine          0.4          1           1
 N asparagine          5.5         14           3
 P proline             3.9         10           1
 Q glutamine           2.8          7           1
 R arginine            6.7         17           2
 S serine             10.2         26           2
 T threonine           2.0          5           1
 V valine              5.5         14           2
 W tryptophan          0.8          2           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: leucine rich repeat containing 38, parti... 
LRRC38                0.979   PREDICTED: leucine rich repeat containing 38 
LRRC38                0.979   PREDICTED: leucine rich repeat containing 38 
LRRC55                0.282   leucine rich repeat containing 55 
LRRC26                0.205   leucine rich repeat containing 26 
LRRC52                0.199   leucine rich repeat containing 52 
CPN2                  0.167   carboxypeptidase N, polypeptide 2, 83kD 
RTN4RL2               0.167   reticulon 4 receptor-like 2 
SLIT2                 0.155   slit homolog 2 
SLIT1                 0.155   slit homolog 1 
LRTM1                 0.151   leucine-rich repeats and transmembrane domains 1 [Ho...
ISLR                  0.149   immunoglobulin superfamily containing leucine-rich r...
ISLR                  0.149   immunoglobulin superfamily containing leucine-rich re...
LRTM2                 0.146   leucine-rich repeats and transmembrane domains 2 [Ho...
RTN4R                 0.146   reticulon 4 receptor precursor 
SLIT3                 0.144   slit homolog 3 
LRRC24                0.136   leucine rich repeat containing 24 
LRRC70                0.130   synleurin 
IGSF10                0.130   immunoglobulin superfamily, member 10 
SLITRK6               0.130   slit and trk like 6 
ISLR2                 0.128   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.128   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.128   immunoglobulin superfamily containing leucine-rich r...
ISLR2                 0.128   immunoglobulin superfamily containing leucine-rich ...
ELFN2                 0.128   leucine rich repeat containing 62 
RTN4RL1               0.119   reticulon 4 receptor-like 1 
IGFALS                0.117   insulin-like growth factor binding protein, acid la...
IGFALS                0.117   insulin-like growth factor binding protein, acid labi...
LRRC15                0.115   leucine rich repeat containing 15 isoform a 
LRRC15                0.115   leucine rich repeat containing 15 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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