Guide to the Human Genome
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Name: LRRC52 Sequence: fasta or formatted (313aa) NCBI GI: 194018474
Description:

leucine rich repeat containing 52

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         15           2
 C cysteine            3.5         11           1
 D aspartate           4.8         15           2
 E glutamate           4.2         13           2
 F phenylalanine       6.1         19           1
 G glycine             5.4         17           1
 H histidine           2.6          8           1
 I isoleucine          5.4         17           1
 K lysine              2.2          7           1
 L leucine            15.3         48           3
 M methionine          1.9          6           1
 N asparagine          6.4         20           2
 P proline             4.5         14           1
 Q glutamine           3.5         11           1
 R arginine            4.2         13           2
 S serine              7.7         24           2
 T threonine           8.3         26           2
 V valine              5.1         16           1
 W tryptophan          1.3          4           1
 Y tyrosine            2.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 52 
LRRC55                0.190   leucine rich repeat containing 55 
LRRC38                0.154   PREDICTED: leucine rich repeat containing 38, parti...
LRRC38                0.149   PREDICTED: leucine rich repeat containing 38 
LRRC38                0.149   PREDICTED: leucine rich repeat containing 38 
LRRC26                0.115   leucine rich repeat containing 26 
SLIT1                 0.109   slit homolog 1 
LRTM1                 0.109   leucine-rich repeats and transmembrane domains 1 [Ho...
LRTM2                 0.104   leucine-rich repeats and transmembrane domains 2 [Ho...
SLIT3                 0.101   slit homolog 3 
SLIT2                 0.099   slit homolog 2 
LRRC70                0.099   synleurin 
LRRC24                0.096   leucine rich repeat containing 24 
PXDNL                 0.094   peroxidasin homolog-like 
LRRC4B                0.093   leucine rich repeat containing 4B 
IGSF10                0.089   immunoglobulin superfamily, member 10 
LINGO3                0.086   leucine rich repeat and Ig domain containing 3 [Hom...
LRRC4C                0.086   netrin-G1 ligand 
VASN                  0.083   slit-like 2 
MXRA5                 0.081   adlican 
LRRC15                0.081   leucine rich repeat containing 15 isoform a 
LRRC15                0.081   leucine rich repeat containing 15 isoform b 
IGFALS                0.081   insulin-like growth factor binding protein, acid la...
IGFALS                0.081   insulin-like growth factor binding protein, acid labi...
LINGO4                0.080   leucine rich repeat and Ig domain containing 4 [Homo...
ISLR2                 0.080   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.080   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.080   immunoglobulin superfamily containing leucine-rich r...
ISLR2                 0.080   immunoglobulin superfamily containing leucine-rich ...
LRFN5                 0.078   leucine rich repeat and fibronectin type III domain ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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