Guide to the Human Genome
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Name: LOC100290560 Sequence: fasta or formatted (150aa) NCBI GI: 239752577
Description:

PREDICTED: hypothetical protein XP_002348294

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          7           1
 C cysteine            3.3          5           1
 D aspartate           5.3          8           1
 E glutamate          11.3         17           4
 F phenylalanine       2.0          3           1
 G glycine             4.0          6           2
 H histidine           1.3          2           1
 I isoleucine          6.0          9           1
 K lysine              8.0         12           1
 L leucine            10.7         16           2
 M methionine          3.3          5           1
 N asparagine          4.0          6           1
 P proline             7.3         11           2
 Q glutamine           4.7          7           1
 R arginine            9.3         14           2
 S serine              3.3          5           1
 T threonine           4.7          7           1
 V valine              3.3          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348294 
LOC100292459          1.000   PREDICTED: similar to protein-L-isoaspartate (D-asp...
LOC100287647          1.000   PREDICTED: hypothetical protein XP_002343514 
LOC100291082          0.682   PREDICTED: hypothetical protein XP_002348296 
LOC100291612          0.668   PREDICTED: similar to protein-L-isoaspartate (D-asp...
LOC100290997          0.668   PREDICTED: hypothetical protein XP_002346467 
PCMTD1                0.668   protein-L-isoaspartate (D-aspartate) O-methyltransf...
LOC100291960          0.661   PREDICTED: similar to protein-L-isoaspartate (D-asp...
PCMTD2                0.198   protein-L-isoaspartate (D-aspartate) O-methyltransf...
PCMTD2                0.198   protein-L-isoaspartate (D-aspartate) O-methyltransf...
SHROOM4               0.053   shroom family member 4 
CHIC1                 0.053   cysteine-rich hydrophobic domain 1 
RYR1                  0.049   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.049   skeletal muscle ryanodine receptor isoform 1 
PRKCSH                0.046   protein kinase C substrate 80K-H isoform 1 
APLP2                 0.042   amyloid beta (A4) precursor-like protein 2 isoform ...
APLP2                 0.042   amyloid beta (A4) precursor-like protein 2 isoform ...
APLP2                 0.042   amyloid beta (A4) precursor-like protein 2 isoform 1 ...
YTHDC1                0.042   splicing factor YT521-B isoform 2 
YTHDC1                0.042   splicing factor YT521-B isoform 1 
SLC24A1               0.035   solute carrier family 24 (sodium/potassium/calcium ex...
MYST4                 0.035   MYST histone acetyltransferase (monocytic leukemia)...
LOC100294088          0.035   PREDICTED: hypothetical protein, partial 
DCAF8L2               0.032   DDB1 and CUL4 associated factor 8-like 2 
DAXX                  0.032   death-domain associated protein isoform a 
DAXX                  0.032   death-domain associated protein isoform a 
DAXX                  0.032   death-domain associated protein isoform b 
PRKCSH                0.032   protein kinase C substrate 80K-H isoform 2 
RANGAP1               0.032   Ran GTPase activating protein 1 
CCDC136               0.032   coiled-coil domain containing 136 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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