Guide to the Human Genome
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Name: CHIC1 Sequence: fasta or formatted (224aa) NCBI GI: 154759293
Description:

cysteine-rich hydrophobic domain 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         10           2
 C cysteine            4.5         10           4
 D aspartate           3.6          8           3
 E glutamate          18.8         42          21
 F phenylalanine       3.1          7           1
 G glycine             3.6          8           1
 H histidine           1.8          4           1
 I isoleucine          4.5         10           1
 K lysine              5.8         13           2
 L leucine             9.8         22           2
 M methionine          1.8          4           2
 N asparagine          3.6          8           2
 P proline             7.1         16           4
 Q glutamine           0.4          1           1
 R arginine            4.9         11           2
 S serine              8.5         19           5
 T threonine           4.5         10           1
 V valine              5.8         13           2
 W tryptophan          1.8          4           1
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cysteine-rich hydrophobic domain 1 
CHIC2                 0.592   cysteine-rich hydrophobic domain 2 
CDC2L2                0.098   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.098   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.098   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.098   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.098   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.098   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.098   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.098   cell division cycle 2-like 1 (PITSLRE proteins) isof...
MYT1                  0.087   myelin transcription factor 1 
SLC24A1               0.077   solute carrier family 24 (sodium/potassium/calcium ex...
PRKCSH                0.073   protein kinase C substrate 80K-H isoform 1 
TTBK1                 0.073   tau tubulin kinase 1 
MYST4                 0.073   MYST histone acetyltransferase (monocytic leukemia)...
RANGAP1               0.073   Ran GTPase activating protein 1 
SUPT5H                0.071   suppressor of Ty 5 homolog isoform b 
SUPT5H                0.071   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.071   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.071   suppressor of Ty 5 homolog isoform a 
SHROOM4               0.068   shroom family member 4 
DAXX                  0.066   death-domain associated protein isoform a 
DAXX                  0.066   death-domain associated protein isoform a 
DAXX                  0.066   death-domain associated protein isoform b 
ATRX                  0.066   transcriptional regulator ATRX isoform 2 
ATRX                  0.066   transcriptional regulator ATRX isoform 1 
MYT1L                 0.066   myelin transcription factor 1-like 
TNNT2                 0.066   troponin T type 2, cardiac isoform 3 
TNNT2                 0.066   troponin T type 2, cardiac isoform 2 
FAM9A                 0.066   family with sequence similarity 9, member A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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