Guide to the Human Genome
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Name: RYR1 Sequence: fasta or formatted (5038aa) NCBI GI: 113204615
Description:

skeletal muscle ryanodine receptor isoform 1

Referenced in:

Protein Composition and Structure
Gene Structure
Muscle

Other entries for this name:
alt prot [5033aa] skeletal muscle ryanodine receptor isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6        384           3
 C cysteine            2.0        100           2
 D aspartate           5.0        253           3
 E glutamate           9.4        476           6
 F phenylalanine       4.1        207           4
 G glycine             7.2        363           3
 H histidine           2.6        133           2
 I isoleucine          4.0        203           3
 K lysine              4.5        228           3
 L leucine            11.1        558           3
 M methionine          2.9        145           3
 N asparagine          3.4        170           2
 P proline             5.4        271           3
 Q glutamine           4.1        205           2
 R arginine            5.8        294           3
 S serine              5.9        296           3
 T threonine           4.6        231           3
 V valine              6.3        317           3
 W tryptophan          1.3         63           2
 Y tyrosine            2.8        141           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   skeletal muscle ryanodine receptor isoform 1 
RYR1                  0.999   skeletal muscle ryanodine receptor isoform 2 
RYR2                  0.650   cardiac muscle ryanodine receptor 
RYR3                  0.467   ryanodine receptor 3 
ITPR2                 0.014   inositol 1,4,5-triphosphate receptor, type 2 
ITPR1                 0.014   inositol 1,4,5-triphosphate receptor, type 1 isofor...
ITPR1                 0.014   inositol 1,4,5-triphosphate receptor, type 1 isofor...
ITPR3                 0.013   inositol 1,4,5-triphosphate receptor, type 3 
MYT1                  0.005   myelin transcription factor 1 
RNF123                0.005   ring finger protein 123 
RSPRY1                0.004   ring finger and SPRY domain containing 1 
PELP1                 0.004   proline, glutamic acid and leucine rich protein 1 [...
TTBK1                 0.004   tau tubulin kinase 1 
LOC728792             0.004   PREDICTED: hypothetical protein 
RANGAP1               0.004   Ran GTPase activating protein 1 
NEXN                  0.004   nexilin (F actin binding protein) 
ZEB1                  0.003   zinc finger E-box binding homeobox 1 isoform a [Hom...
ZEB1                  0.003   zinc finger E-box binding homeobox 1 isoform b [Hom...
C12orf12              0.003   hypothetical protein LOC196477 
WDR87                 0.003   NYD-SP11 protein 
TRIM26                0.003   tripartite motif-containing 26 
CLSPN                 0.003   claspin 
TCHH                  0.003   trichohyalin 
MYST4                 0.003   MYST histone acetyltransferase (monocytic leukemia)...
YTHDC1                0.003   splicing factor YT521-B isoform 2 
YTHDC1                0.003   splicing factor YT521-B isoform 1 
MYT1L                 0.003   myelin transcription factor 1-like 
CENPB                 0.003   centromere protein B 
LOC283685             0.003   PREDICTED: golgi autoantigen, golgin subfamily a-li...
RPGR                  0.003   retinitis pigmentosa GTPase regulator isoform C [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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