Guide to the Human Genome
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Name: LOC100290997 Sequence: fasta or formatted (132aa) NCBI GI: 239747889
Description:

PREDICTED: hypothetical protein XP_002346467

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1          8           1
 C cysteine            0.0          0           0
 D aspartate           5.3          7           1
 E glutamate          12.9         17           4
 F phenylalanine       2.3          3           1
 G glycine             2.3          3           1
 H histidine           1.5          2           1
 I isoleucine          5.3          7           1
 K lysine              9.8         13           1
 L leucine             9.8         13           2
 M methionine          3.8          5           1
 N asparagine          3.8          5           1
 P proline             9.8         13           2
 Q glutamine           5.3          7           1
 R arginine            9.8         13           2
 S serine              3.0          4           1
 T threonine           3.8          5           2
 V valine              2.3          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346467 
LOC100291612          1.000   PREDICTED: similar to protein-L-isoaspartate (D-asp...
PCMTD1                0.880   protein-L-isoaspartate (D-aspartate) O-methyltransf...
LOC100291082          0.860   PREDICTED: hypothetical protein XP_002348296 
LOC100291960          0.806   PREDICTED: similar to protein-L-isoaspartate (D-asp...
LOC100292459          0.781   PREDICTED: similar to protein-L-isoaspartate (D-asp...
LOC100290560          0.781   PREDICTED: hypothetical protein XP_002348294 
LOC100287647          0.781   PREDICTED: hypothetical protein XP_002343514 
PCMTD2                0.298   protein-L-isoaspartate (D-aspartate) O-methyltransf...
PCMTD2                0.298   protein-L-isoaspartate (D-aspartate) O-methyltransf...
RYR1                  0.062   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.062   skeletal muscle ryanodine receptor isoform 1 
CHIC1                 0.062   cysteine-rich hydrophobic domain 1 
PRKCSH                0.054   protein kinase C substrate 80K-H isoform 1 
MYST4                 0.050   MYST histone acetyltransferase (monocytic leukemia)...
SHROOM4               0.050   shroom family member 4 
YTHDC1                0.050   splicing factor YT521-B isoform 2 
YTHDC1                0.050   splicing factor YT521-B isoform 1 
LOC100294088          0.045   PREDICTED: hypothetical protein, partial 
SLC24A1               0.045   solute carrier family 24 (sodium/potassium/calcium ex...
CCDC136               0.041   coiled-coil domain containing 136 
NCOR1                 0.041   nuclear receptor co-repressor 1 
PRKCSH                0.041   protein kinase C substrate 80K-H isoform 2 
TULP1                 0.041   tubby like protein 1 
DAXX                  0.037   death-domain associated protein isoform a 
DAXX                  0.037   death-domain associated protein isoform a 
DAXX                  0.037   death-domain associated protein isoform b 
TTBK1                 0.037   tau tubulin kinase 1 
ZNF462                0.037   zinc finger protein 462 
MICAL3                0.037   microtubule associated monoxygenase, calponin and L...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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