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Search of human proteins with 239751605
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 434 e-122
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 434 e-122
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens] 430 e-121
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 48 5e-06
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 48 5e-06
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 48 5e-06
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 47 9e-06
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 47 9e-06
gi|169207534 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|169162343 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|113411617 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 46 2e-05
gi|169214023 PREDICTED: hypothetical protein [Homo sapiens] 45 3e-05
gi|169214468 PREDICTED: hypothetical protein [Homo sapiens] 45 3e-05
gi|50511941 EMI domain containing 1 [Homo sapiens] 45 3e-05
gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo ... 45 4e-05
gi|226498192 atonal homolog 8 [Homo sapiens] 45 6e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 45 6e-05
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 44 7e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 44 1e-04
gi|188536004 zinc finger protein 469 [Homo sapiens] 44 1e-04
gi|56549117 dynamin 1 isoform 2 [Homo sapiens] 44 1e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 44 1e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 44 1e-04
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 44 1e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 43 2e-04
gi|239745038 PREDICTED: hypothetical protein XP_002343338 [Homo ... 43 2e-04
gi|18079216 CASK interacting protein 1 [Homo sapiens] 42 3e-04
gi|7710129 LIM domain only 6 [Homo sapiens] 42 3e-04
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 42 3e-04
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 434 bits (1116), Expect = e-122
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MYQGLGESPHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIR 60
MYQGLGESPHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIR
Sbjct: 1 MYQGLGESPHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIR 60
Query: 61 AHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR 120
AHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR
Sbjct: 61 AHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR 120
Query: 121 RPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVS 180
RPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVS
Sbjct: 121 RPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVS 180
Query: 181 AWSRGARRERSSRGGIFARPRWGKDYNC 208
AWSRGARRERSSRGGIFARPRWGKDYNC
Sbjct: 181 AWSRGARRERSSRGGIFARPRWGKDYNC 208
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 434 bits (1116), Expect = e-122
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MYQGLGESPHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIR 60
MYQGLGESPHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIR
Sbjct: 1 MYQGLGESPHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIR 60
Query: 61 AHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR 120
AHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR
Sbjct: 61 AHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR 120
Query: 121 RPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVS 180
RPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVS
Sbjct: 121 RPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVS 180
Query: 181 AWSRGARRERSSRGGIFARPRWGKDYNC 208
AWSRGARRERSSRGGIFARPRWGKDYNC
Sbjct: 181 AWSRGARRERSSRGGIFARPRWGKDYNC 208
>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 430 bits (1106), Expect = e-121
Identities = 206/208 (99%), Positives = 207/208 (99%)
Query: 1 MYQGLGESPHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIR 60
MYQGLGESPHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIR
Sbjct: 1 MYQGLGESPHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIR 60
Query: 61 AHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR 120
AHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR
Sbjct: 61 AHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR 120
Query: 121 RPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVS 180
RPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALR+VLATGPAQPTSPRLV
Sbjct: 121 RPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRKVLATGPAQPTSPRLVF 180
Query: 181 AWSRGARRERSSRGGIFARPRWGKDYNC 208
AWSRGARRERSSRGGIFARPRWGKDYNC
Sbjct: 181 AWSRGARRERSSRGGIFARPRWGKDYNC 208
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 48.1 bits (113), Expect = 5e-06
Identities = 44/147 (29%), Positives = 56/147 (38%), Gaps = 21/147 (14%)
Query: 49 LEDTGSPAP--TIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRA 106
L SPAP T A A P A P + + + P S + PPET A
Sbjct: 154 LAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTA 213
Query: 107 RLAWAPRFLPTNGRRPSPPRPPMSAPTP------PLGKSEPGEPETSG----PRAYLRDP 156
P P +PP + PTP PL S P PET+ P A DP
Sbjct: 214 APPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAP--PETTAVPPTPSATTLDP 271
Query: 157 GASAALRQVL-------ATGPAQPTSP 176
+++A + AT PA P+SP
Sbjct: 272 SSASAPPETTAAPPTPSATTPAPPSSP 298
Score = 29.3 bits (64), Expect = 2.5
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 75 PEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTP 134
P+ + + R + S +P P + A P T PS PP + P
Sbjct: 133 PQNATTISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAP 192
Query: 135 PLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTS 175
P + T P + P +AA AT PA P+S
Sbjct: 193 PTPSA-----TTQAPPSSSAPPETTAAPPTPPATTPAPPSS 228
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 19/96 (19%)
Query: 52 TGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWA 111
+ +P T A A P A P + + P+S + PPET A
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTA----- 282
Query: 112 PRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETS 147
+PP P + P PP S P ET+
Sbjct: 283 -----------APPTPSATTPAPP---SSPAPQETT 304
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 48.1 bits (113), Expect = 5e-06
Identities = 44/147 (29%), Positives = 56/147 (38%), Gaps = 21/147 (14%)
Query: 49 LEDTGSPAP--TIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRA 106
L SPAP T A A P A P + + + P S + PPET A
Sbjct: 154 LAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTA 213
Query: 107 RLAWAPRFLPTNGRRPSPPRPPMSAPTP------PLGKSEPGEPETSG----PRAYLRDP 156
P P +PP + PTP PL S P PET+ P A DP
Sbjct: 214 APPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAP--PETTAVPPTPSATTLDP 271
Query: 157 GASAALRQVL-------ATGPAQPTSP 176
+++A + AT PA P+SP
Sbjct: 272 SSASAPPETTAAPPTPSATTPAPPSSP 298
Score = 29.3 bits (64), Expect = 2.5
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 75 PEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTP 134
P+ + + R + S +P P + A P T PS PP + P
Sbjct: 133 PQNATTISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAP 192
Query: 135 PLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTS 175
P + T P + P +AA AT PA P+S
Sbjct: 193 PTPSA-----TTQAPPSSSAPPETTAAPPTPPATTPAPPSS 228
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 19/96 (19%)
Query: 52 TGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWA 111
+ +P T A A P A P + + P+S + PPET A
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTA----- 282
Query: 112 PRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETS 147
+PP P + P PP S P ET+
Sbjct: 283 -----------APPTPSATTPAPP---SSPAPQETT 304
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 48.1 bits (113), Expect = 5e-06
Identities = 44/147 (29%), Positives = 56/147 (38%), Gaps = 21/147 (14%)
Query: 49 LEDTGSPAP--TIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRA 106
L SPAP T A A P A P + + + P S + PPET A
Sbjct: 154 LAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTA 213
Query: 107 RLAWAPRFLPTNGRRPSPPRPPMSAPTP------PLGKSEPGEPETSG----PRAYLRDP 156
P P +PP + PTP PL S P PET+ P A DP
Sbjct: 214 APPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAP--PETTAVPPTPSATTLDP 271
Query: 157 GASAALRQVL-------ATGPAQPTSP 176
+++A + AT PA P+SP
Sbjct: 272 SSASAPPETTAAPPTPSATTPAPPSSP 298
Score = 29.3 bits (64), Expect = 2.5
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 75 PEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTP 134
P+ + + R + S +P P + A P T PS PP + P
Sbjct: 133 PQNATTISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAP 192
Query: 135 PLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTS 175
P + T P + P +AA AT PA P+S
Sbjct: 193 PTPSA-----TTQAPPSSSAPPETTAAPPTPPATTPAPPSS 228
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 19/96 (19%)
Query: 52 TGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWA 111
+ +P T A A P A P + + P+S + PPET A
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTA----- 282
Query: 112 PRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETS 147
+PP P + P PP S P ET+
Sbjct: 283 -----------APPTPSATTPAPP---SSPAPQETT 304
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 47.4 bits (111), Expect = 9e-06
Identities = 45/151 (29%), Positives = 59/151 (39%), Gaps = 16/151 (10%)
Query: 47 KQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPA--PRARAHAHSRRLPASPTGPPET 104
K L+ P T ALGP P A+P P+ P A + LP+ P PP
Sbjct: 266 KGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQ 325
Query: 105 RARLAWAPRFLPTNGRRPSPPRPPMSAP---------TPPLGKSEPGEPETSGPRAYLRD 155
+P T+ PSPP P++ P PPL P P S P + L
Sbjct: 326 ATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPL--QAPPSPPASPPLSPLAT 383
Query: 156 PGASA--ALRQVLATGP-AQPTSPRLVSAWS 183
P A AL L P + P SP + + +S
Sbjct: 384 PSPQAPNALAVHLLQAPFSPPPSPPVQAPFS 414
Score = 35.4 bits (80), Expect = 0.035
Identities = 49/194 (25%), Positives = 63/194 (32%), Gaps = 33/194 (17%)
Query: 18 RKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPG------ 71
R A R+++ GT + + R + G P P A R GP
Sbjct: 144 RSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSA 203
Query: 72 ------ERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPP 125
E P A RP+ + R +S P + AR + R P PS P
Sbjct: 204 SEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQP 263
Query: 126 --------RPPMSAP--------TPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATG 169
RPP P PL S P S P + P A +L Q L +
Sbjct: 264 KPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPS----PSAPPSL-QTLPSP 318
Query: 170 PAQPTSPRLVSAWS 183
PA P S S S
Sbjct: 319 PATPPSQATTSLGS 332
Score = 33.9 bits (76), Expect = 0.10
Identities = 38/120 (31%), Positives = 46/120 (38%), Gaps = 21/120 (17%)
Query: 75 PEASPRP-APRARAHAHSRRLPASPTGPPETRARLA------WAPRFLPTNGRRPS---- 123
P A+P P AP A A H + P SP P +A + +P P + PS
Sbjct: 380 PLATPSPQAPNALA-VHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAP 438
Query: 124 ----PPRPPMSAPTPPLGKSEP-GEPETSGPRAYLRDPGASAALRQVLATGPAQ--PTSP 176
PP PP S P P P P + P L P A LAT P Q P+ P
Sbjct: 439 PLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAP--PALATPPLQALPSPP 496
Score = 31.2 bits (69), Expect = 0.65
Identities = 39/147 (26%), Positives = 49/147 (33%), Gaps = 28/147 (19%)
Query: 75 PEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR-------------R 121
P A+P P A ++P SP P +A PR PT G
Sbjct: 515 PLATPPPQAPPVLAAPLLQVPPSPPASPTLQA-----PRRPPTPGPDTSVSGPRLTLALA 569
Query: 122 PSPPRPPMSAPTPPL------GKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTS 175
P PP PP +P+ L G S R Y P AA + P +
Sbjct: 570 PGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAA----ASPPPDAELA 625
Query: 176 PRLVSAWSRGARRERSSRGGIFARPRW 202
+AWSRG + RG A W
Sbjct: 626 ACHPAAWSRGPAPPLAFRGAPGAPLPW 652
Score = 28.5 bits (62), Expect = 4.2
Identities = 29/103 (28%), Positives = 33/103 (32%), Gaps = 27/103 (26%)
Query: 79 PRPAPRARAHAHSRRLPASPTG------PPETRARLAWAPRFLPTNGRRPSPPRPPMSAP 132
P P + S LP SP PP A L P P + +P RPP P
Sbjct: 496 PASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGP 555
Query: 133 TPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTS 175
+ SGPR L LA GP P S
Sbjct: 556 ----------DTSVSGPR-----------LTLALAPGPPPPPS 577
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 47.4 bits (111), Expect = 9e-06
Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 20/127 (15%)
Query: 52 TGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPT-GPPETRARLAW 110
T P P + + +++ G R P +SP P RA A +R P GPP + L
Sbjct: 752 TPMPPPVDDSWLQVQSVPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPGPPPAGSALGG 811
Query: 111 APRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGP 170
AP G P P PP P+ P ++ PG P SG P
Sbjct: 812 APPVPSRPGASPDPFGPPPQVPSRP-NRAPPGVPSRSG------------------QASP 852
Query: 171 AQPTSPR 177
++P SPR
Sbjct: 853 SRPESPR 859
Score = 40.0 bits (92), Expect = 0.001
Identities = 34/89 (38%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 52 TGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHS--RRLPASPTG---PPETRA 106
T SP P RA A PG RGP P PA A A R ASP PP+ +
Sbjct: 776 TSSPTPQRRAPAVPPAR-PGSRGPAPGPPPAGSALGGAPPVPSRPGASPDPFGPPPQVPS 834
Query: 107 RLAWAPRFLPTNGRRPSPPRPPMSAPTPP 135
R AP +P+ + SP RP +P PP
Sbjct: 835 RPNRAPPGVPSRSGQASPSRP--ESPRPP 861
>gi|169207534 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 46.2 bits (108), Expect = 2e-05
Identities = 44/146 (30%), Positives = 55/146 (37%), Gaps = 24/146 (16%)
Query: 60 RAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPT--------GPPETRARLAWA 111
R+H R ++ G +A P PR A + R+P +PT GPP TR +
Sbjct: 3 RSHPRIRSFGAAWPEEKADLSPRPRFLA---TPRVPGTPTSQLPPRIPGPPTTR-QPPRV 58
Query: 112 PRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETS------------GPRAYLRDPGAS 159
P L + R SP RP S P + P P S GP + P S
Sbjct: 59 PDHLHLSCPRASPDRPRPSCPLASPDRRRPAIPRASPDRPRPISPAPPGPPTSRQPPRIS 118
Query: 160 AALRQVLATGPAQPTSPRLVSAWSRG 185
A VL P PT R V RG
Sbjct: 119 VAAAPVLPAPPRPPTQRRCVPVAQRG 144
>gi|169162343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 46.2 bits (108), Expect = 2e-05
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 60 RAHTRRKALGPGER--GPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPT 117
R +R+ G GE GP +S RPA R A + R PA+ P + + A R +
Sbjct: 13 RGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSGRASRRRAV-- 70
Query: 118 NGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSP- 176
RR S P+S P PL S PG P+++ R + + VLA A P++P
Sbjct: 71 --RRVSGRWLPLSRPLLPL-LSHPGWPDSASSRTLSAESTPPHPHKLVLAPFAASPSAPW 127
Query: 177 --RLVSAWSRGARRERSSRG 194
V + RGA RE+++ G
Sbjct: 128 SLGSVRSLERGAAREQAACG 147
>gi|113411617 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 46.2 bits (108), Expect = 2e-05
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 60 RAHTRRKALGPGER--GPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPT 117
R +R+ G GE GP +S RPA R A + R PA+ P + + A R +
Sbjct: 13 RGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSGRASRRRAV-- 70
Query: 118 NGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSP- 176
RR S P+S P PL S PG P+++ R + + VLA A P++P
Sbjct: 71 --RRVSGRWLPLSRPLLPL-LSHPGWPDSASSRTLSAESTPPHPHKLVLAPFAASPSAPW 127
Query: 177 --RLVSAWSRGARRERSSRG 194
V + RGA RE+++ G
Sbjct: 128 SLGSVRSLERGAAREQAACG 147
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 46.2 bits (108), Expect = 2e-05
Identities = 39/150 (26%), Positives = 52/150 (34%), Gaps = 13/150 (8%)
Query: 10 HKGESELGRKDAKATE-TRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKAL 68
H + GR + + +RE Q D R+ E + P P++R
Sbjct: 149 HGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWR 208
Query: 69 GPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPP 128
G RGP+ P + H H R P+GPP+ F P G P PP
Sbjct: 209 DGGGRGPDELEGPDSKLH-HGHDPRGGLQPSGPPQ----------FPPYRGMMPPFMYPP 257
Query: 129 MSAPTPPLGKSEPGE-PETSGPRAYLRDPG 157
PP G P P GP + R G
Sbjct: 258 YLPFPPPYGPQGPYRYPTPDGPSRFPRVAG 287
Score = 43.5 bits (101), Expect = 1e-04
Identities = 33/88 (37%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 89 AHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPR-PPMSAPTPPLGKSEPGEPETS 147
A +RL A P PP + A P +P P+PP PP SAPTP ++EP EP +
Sbjct: 499 APDKRLKAEPAAPPAAPSTPA-PPPAVPK--ELPAPPAPPPASAPTP---ETEPEEPAQA 552
Query: 148 GPRAYLRDPGASAALRQVLATGPAQPTS 175
P PG +AA V G TS
Sbjct: 553 PPAQSTPTPGVAAAPTLVSGGGSTSSTS 580
Score = 33.1 bits (74), Expect = 0.17
Identities = 45/150 (30%), Positives = 54/150 (36%), Gaps = 22/150 (14%)
Query: 29 SAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIRA---HTRRK-ALGPGERGPEASPRPAPR 84
SAV R H G ++ L S ++ A H R K L +GP SPRP R
Sbjct: 1460 SAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGLPQAPQGP--SPRPPTR 1517
Query: 85 ARAHAHSRRLPASP---------TGPPETRARLAWAPRFLPTNGRRPSPPRPPM-----S 130
+ L + P G T A F P RR PPR P S
Sbjct: 1518 YEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAGVSPFPPK--RRERPPRKPELLQEES 1575
Query: 131 APTPPLGKSEPGEPETSGPRAYLRDPGASA 160
P P +PE GP+A RD G A
Sbjct: 1576 LPPPHSSGFLGSKPEGPGPQAESRDTGTEA 1605
Score = 31.6 bits (70), Expect = 0.50
Identities = 42/168 (25%), Positives = 61/168 (36%), Gaps = 44/168 (26%)
Query: 23 ATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPA 82
A+ETR +G+ ++ K R++ +TGS T L P ++ P
Sbjct: 1084 ASETRS-----EGSEYEEIPKRRRQRGSETGS-------ETHESDLAPSDK-----EAPT 1126
Query: 83 PRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPR-------------PPM 129
P+ L P PP A + AP G R PR PP
Sbjct: 1127 PKEGT------LTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPPQ 1180
Query: 130 SAP--TPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTS 175
P +PP P +P T GP ++P L++ L GP P +
Sbjct: 1181 VCPGWSPPAKSLAPKKPPT-GPLPPSKEP-----LKEKLIPGPLSPVA 1222
Score = 28.9 bits (63), Expect = 3.2
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 98 PTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPG 157
P+G P + L LP PP PP P PP P P P +R P
Sbjct: 1971 PSGAPAQQMLLPMVDSQLPVVNFGSLPPAPP---PAPPPLSLLPVGPALQPPSLAVRPPP 2027
Query: 158 ASAALRQVLATGPAQP 173
A A +VL + PA+P
Sbjct: 2028 APAT--RVLPS-PARP 2040
Score = 28.1 bits (61), Expect = 5.5
Identities = 28/96 (29%), Positives = 33/96 (34%), Gaps = 17/96 (17%)
Query: 97 SPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDP 156
SP P T + AWA P P PP AP PPL G GP D
Sbjct: 380 SPNSEPPT-PKTAWAETSRPPE-TEPGPP-----APKPPLPPPHRGPAGNWGPPGDYPDR 432
Query: 157 GASAALRQVLATGPAQPTSPRLVSAWSRGARRERSS 192
G P +P +P R R++ SS
Sbjct: 433 GGP----------PCKPPAPEDEDEAWRQRRKQSSS 458
>gi|169214023 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 45.4 bits (106), Expect = 3e-05
Identities = 43/133 (32%), Positives = 51/133 (38%), Gaps = 12/133 (9%)
Query: 80 RPAPRARAHAHSRRLPASPT---GPPETRARLAWAPRFLPTNGRRP--SPPRPPMS-APT 133
RP+P A+ H HS L G + + + P P RP P PP S AP
Sbjct: 11 RPSPSAK-HLHSSLLQGQQRLLRGEEGSFSHELFRPAHRPGPALRPRPQPKAPPSSAAPP 69
Query: 134 PPLGKSEPGEPETSGPRAY---LRDPGASAALRQVLATGPAQPTS--PRLVSAWSRGARR 188
P P P GPR + P Q+LA GPA + P L S A R
Sbjct: 70 TPHSSIPPRPPSPWGPRVWGAPTHRPALKGTEAQLLAPGPAAGSGCWPELAGTESASAER 129
Query: 189 ERSSRGGIFARPR 201
ER G RPR
Sbjct: 130 EREGGGPRSIRPR 142
>gi|169214468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 45.4 bits (106), Expect = 3e-05
Identities = 43/133 (32%), Positives = 51/133 (38%), Gaps = 12/133 (9%)
Query: 80 RPAPRARAHAHSRRLPASPT---GPPETRARLAWAPRFLPTNGRRP--SPPRPPMS-APT 133
RP+P A+ H HS L G + + + P P RP P PP S AP
Sbjct: 11 RPSPSAK-HLHSSLLQGQQRLLRGEEGSFSHELFRPAHRPGPALRPRPQPKAPPSSAAPP 69
Query: 134 PPLGKSEPGEPETSGPRAY---LRDPGASAALRQVLATGPAQPTS--PRLVSAWSRGARR 188
P P P GPR + P Q+LA GPA + P L S A R
Sbjct: 70 TPHSSIPPRPPSPWGPRVWGAPTHRPALKGTEAQLLAPGPAAGSGCWPELAGTESASAER 129
Query: 189 ERSSRGGIFARPR 201
ER G RPR
Sbjct: 130 EREGGGPRSIRPR 142
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 45.4 bits (106), Expect = 3e-05
Identities = 53/183 (28%), Positives = 62/183 (33%), Gaps = 25/183 (13%)
Query: 35 GTAGHDLRKGHRKQLEDTGSPAPTIRAHT--RRKALG-PGERGPEASPRPAPRARAHAHS 91
G G G R + G P P + R A+G PGERGP P P
Sbjct: 205 GPTGPKGDAGSRGPMGMRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPG----- 259
Query: 92 RRLPASPTGPPETRARLAWAP----RFLPTNGRRPS----PPRPP--MSAPTPPLGKSEP 141
P +P GPP R P F TN P PP PP M P PP P
Sbjct: 260 ---PPAPVGPPHARISQHGDPLLSNTFTETNNHWPQGPTGPPGPPGPMGPPGPPGPTGVP 316
Query: 142 GEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVSAWSRGARRERSSRGGIFARPR 201
G P GP G S + G P+ S G R E +G +
Sbjct: 317 GSPGHIGPPGPTGPKGISGHPGEKGERGLRGEPGPQ----GSAGQRGEPGPKGDPGEKSH 372
Query: 202 WGK 204
WG+
Sbjct: 373 WGE 375
>gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo
sapiens]
Length = 201
Score = 45.1 bits (105), Expect = 4e-05
Identities = 51/166 (30%), Positives = 60/166 (36%), Gaps = 22/166 (13%)
Query: 45 HRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPA-------- 96
HR LE P+ R + G R A R P A A ++R P
Sbjct: 34 HRNPLETPPGPSKAAR-----RGRGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLPAA 88
Query: 97 -SPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAP-TPPLGKSEPGEPETSGPRAYLR 154
SP GP R +W R +P G P + A PPLG+ G A
Sbjct: 89 RSPRGPQPLSPRSSWV-RGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGRGGAPASLASSA 147
Query: 155 DPGASAALRQVLATGPAQ-----PTSPRLVSAW-SRGARRERSSRG 194
P A+ AL PA P SP L S W R ARR RS G
Sbjct: 148 RPCAAPALPYRERARPAALHWRTPASPSLGSGWFRRRARRPRSCCG 193
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 44.7 bits (104), Expect = 6e-05
Identities = 38/105 (36%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 50 EDTGSPAPTIRAHTRR----KALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETR 105
E GS AP + +R A+GPG P P PAP+++A A P P R
Sbjct: 95 ERGGSRAPEVSDARKRCFALGAVGPGLPTPPPPPPPAPQSQAPGGPE---AQPFREPGLR 151
Query: 106 AR-LAWAPRFLPTNGRRPSPPRPPMSA--PTPPLGKSEPGEPETS 147
R L AP P P+PP PP S P PP + PGE S
Sbjct: 152 PRILLCAPPARPAPSAPPAPPAPPESTVRPAPP---TRPGESSYS 193
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 44.7 bits (104), Expect = 6e-05
Identities = 53/199 (26%), Positives = 75/199 (37%), Gaps = 16/199 (8%)
Query: 8 SPHKGESELGRKDAKA-TETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRK 66
SP + D+KA T T R G++ K +P ++ R
Sbjct: 1552 SPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPR-- 1609
Query: 67 ALGPGERGPEASPRP---APRA-----RAHAHSRRLPASPTGPPETRARLAWAPRFLPTN 118
A + G ++SP P APRA R+ + S+ SP G T + P+
Sbjct: 1610 AAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTAR 1669
Query: 119 GRRPSPPRPPMSAPTPPLGKSEPGEPE-TSGPRAYLRDPGASAALRQVLATGPAQPTSPR 177
S P P + TPP +S PE T R R AS++ T P SP
Sbjct: 1670 RGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPS 1729
Query: 178 LVS----AWSRGARRERSS 192
+ S SR +RR RS+
Sbjct: 1730 VSSPEPAEKSRSSRRRRSA 1748
Score = 33.9 bits (76), Expect = 0.10
Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 13/128 (10%)
Query: 28 ESAVQRQGTAGHDLRKGHRKQLEDT----GSPAPTIRAHTRRKALGPGERGPEASPRPAP 83
ES+ R+ +K HR + E SP P + ++ K +R S PAP
Sbjct: 201 ESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDK-----KRKRSRSTTPAP 255
Query: 84 RA-RAHAHSRRLPASPTGPPETRARLAWAPRFLPT-NGRRPSPPRPPMSAPTPPLGKSEP 141
++ RAH + AS + +R+R A A GR PSP P SEP
Sbjct: 256 KSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPF--SEP 313
Query: 142 GEPETSGP 149
G T P
Sbjct: 314 GTTSTQRP 321
Score = 33.5 bits (75), Expect = 0.13
Identities = 57/254 (22%), Positives = 83/254 (32%), Gaps = 58/254 (22%)
Query: 3 QGLGESPHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIRAH 62
+G G++P SE G + + E+A ++ + D K +++ SP+P
Sbjct: 303 RGEGDAPF---SEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSP----- 354
Query: 63 TRRKALGPGERGPE--------ASPRPA------------PRARAHAHSRRLPASPTGPP 102
R + GP P SP+P P + R P SP P
Sbjct: 355 -ERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLP 413
Query: 103 ETRARLAWAPRFLPTNGRR--PSPPRPPMSAPTPPLGK---SEPGEPETSGPRA------ 151
++ + + P PT R S P P AP P + S P S RA
Sbjct: 414 QSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSH 473
Query: 152 ---------YLRDPGASAALRQVLAT----GPAQPTSP-----RLVSAWSRGARRERSSR 193
R P + R T G ++ SP R W R +R R
Sbjct: 474 SHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGR 533
Query: 194 GGIFARPRWGKDYN 207
RP W + N
Sbjct: 534 SRSPQRPGWSRSRN 547
Score = 30.0 bits (66), Expect = 1.5
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 70 PGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPP 128
P + GP+A P+PA + RR SP P ++ R + + + P RRPSP P
Sbjct: 2651 PAKPGPQALPKPASPKKPPPGERR-SRSPRKPIDS-LRDSRSLSYSPVERRRPSPQPSP 2707
Score = 29.6 bits (65), Expect = 1.9
Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 10/186 (5%)
Query: 6 GESPHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIRAHTRR 65
G SP L R +++ + +R+ +G R+Q + S TRR
Sbjct: 1760 GRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRV------TRR 1813
Query: 66 KALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPP 125
+ G G + + + R + R PT +R+R + AP + R SP
Sbjct: 1814 RRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAP--WKRSRSRASPA 1871
Query: 126 RPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVSAWSRG 185
S PL TS P + R ++ R+ + A P S R + +
Sbjct: 1872 THRRSRSRTPLISRRRSRSRTS-PVSRRRSRSRTSVTRR-RSRSRASPVSRRRSRSRTPP 1929
Query: 186 ARRERS 191
R RS
Sbjct: 1930 VTRRRS 1935
Score = 29.3 bits (64), Expect = 2.5
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 50 EDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLA 109
E + S +PT + ++K G R +SPR R R + ++ S + E++ R
Sbjct: 176 ESSSSRSPTPKQKKKKKKKDRGRRSESSSPR---RERKKSSKKKKHRSES---ESKKRKH 229
Query: 110 WAPRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGAS 159
+P P + R+ + S T P KS TS A D S
Sbjct: 230 RSP--TPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRS 277
Score = 28.9 bits (63), Expect = 3.2
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 24/144 (16%)
Query: 46 RKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAP----------RARA-----HAH 90
R+ + SP P ++A + P +R S P+P R+R+ +
Sbjct: 906 RQSPSRSSSPQPKVKA-----IISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVE 960
Query: 91 SRRLPA---SPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPPL-GKSEPGEPET 146
SR LP S + P+T+ + PR + P P + P P L G P E
Sbjct: 961 SRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQTPPGPSLSGSKSPCPQEK 1020
Query: 147 SGPRAYLRDPGASAALRQVLATGP 170
S PG+ + V ++ P
Sbjct: 1021 SKDSLVQSCPGSLSLCAGVKSSTP 1044
Score = 27.3 bits (59), Expect = 9.4
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 54 SPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPR 113
SP P ++ T + G P+A R P RR +S + PP+ +++
Sbjct: 783 SPCPKQKSQTPPRRSRSGSSQPKAKSRTPP--------RRSRSSSSPPPKQKSKTP---- 830
Query: 114 FLPTNGRRPSPPRPPMSAPTPP 135
S P P + + TPP
Sbjct: 831 --SRQSHSSSSPHPKVKSGTPP 850
Score = 27.3 bits (59), Expect = 9.4
Identities = 30/119 (25%), Positives = 41/119 (34%), Gaps = 4/119 (3%)
Query: 63 TRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRP 122
TR E P+A + + S L A P P R+ A +P R P
Sbjct: 1376 TRSSGHSSSELSPDAVEKAGMSSNQSISSPVLDAVPRTPSRERSSSASSPEMKDGLPRTP 1435
Query: 123 SPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRD-PGASAALRQVLATGP---AQPTSPR 177
S S+P G P SG ++D P + R + P A P +PR
Sbjct: 1436 SRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTPR 1494
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 44.3 bits (103), Expect = 7e-05
Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 29/126 (23%)
Query: 48 QLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRAR 107
QL T PA ++ + K GP +GP +P T P E A
Sbjct: 1216 QLMKTQEPAGSLEENNSDKNSGP--QGPRRTP-------------------TMPQEEAA- 1253
Query: 108 LAWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLA 167
A P LP R P PP PP P PPL + + +S P+ +P +AAL Q+L+
Sbjct: 1254 -ACPPHILPPEKRPPEPPGPPPPPPPPPLVEGD----LSSAPQEL--NPAVTAALLQLLS 1306
Query: 168 TGPAQP 173
A+P
Sbjct: 1307 QPEAEP 1312
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 43.9 bits (102), Expect = 1e-04
Identities = 55/194 (28%), Positives = 68/194 (35%), Gaps = 47/194 (24%)
Query: 35 GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERG-PEASPRPAPRARAHAHSRR 93
G AG + ++G R + TG P P + GPG RG P A P+ A
Sbjct: 461 GPAGEEGKRGARGEPGPTGLPGPP------GERGGPGSRGFPGADGVAGPKGPAGERGSP 514
Query: 94 LPASPTGPPETRAR-----------LAWAPRFLPTNGR-----------RPSPPRPP--- 128
PA P G P R L +P +G+ RP PP PP
Sbjct: 515 GPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGAR 574
Query: 129 -----MSAPTPPLGKSEPGEPETSGPRAYLRDPGA---SAALRQVLATGPAQPTSPRLVS 180
M P P K GEP +G R PGA + + A GP P P
Sbjct: 575 GQAGVMGFPGP---KGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP---- 627
Query: 181 AWSRGARRERSSRG 194
A RG + S G
Sbjct: 628 AGERGEQGPAGSPG 641
Score = 43.9 bits (102), Expect = 1e-04
Identities = 51/182 (28%), Positives = 61/182 (33%), Gaps = 26/182 (14%)
Query: 35 GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERG-------PEASPRPAPRARA 87
G AG G G+P P A R PG+RG P S P + +
Sbjct: 929 GPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPS 988
Query: 88 HAHSRRLPASPTGPPET-----RARLAWAPRFLPTNGRRPSP----------PRPPMSAP 132
A R P P GPP + AP + GR SP P P AP
Sbjct: 989 GASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 1048
Query: 133 TPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVSAWSRGARRERSS 192
P G SG R G + + V A GPA P PR +G E+
Sbjct: 1049 GAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPR----GDKGETGEQGD 1104
Query: 193 RG 194
RG
Sbjct: 1105 RG 1106
Score = 39.3 bits (90), Expect = 0.002
Identities = 55/205 (26%), Positives = 66/205 (32%), Gaps = 28/205 (13%)
Query: 6 GESPHKGES----ELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAP---- 57
GE GE+ ++G + R A G G+D G TG P
Sbjct: 287 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP 346
Query: 58 -TIRAHTRRKALGP-GERGPEA-SPRPAPRARAHAHSRRLPASPTGPPETRAR-----LA 109
+ A GP G GP+ P P A A G P + +A
Sbjct: 347 GAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIA 406
Query: 110 WAPRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATG 169
AP F R PS P+ P P P EPG P + G D GA V G
Sbjct: 407 GAPGF--PGARGPSGPQGPGGPPGPKGNSGEPGAPGSKG------DTGAKGEPGPVGVQG 458
Query: 170 PAQPTSPRLVSAWSRGARRERSSRG 194
P P RGAR E G
Sbjct: 459 PPGPAG----EEGKRGARGEPGPTG 479
Score = 37.7 bits (86), Expect = 0.007
Identities = 53/185 (28%), Positives = 69/185 (37%), Gaps = 41/185 (22%)
Query: 35 GTAGHDLRKGHRKQLEDTGSP-APTIRAHTRRKALGPGERGPEASPRP-------APRAR 86
G G+D KG D G+P AP + + + PGERG P P P+
Sbjct: 701 GAPGNDGAKG------DAGAPGAPGSQGAPGLQGM-PGERGAAGLPGPKGDRGDAGPKGA 753
Query: 87 AHAHSR---RLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGE 143
+ + R P GPP A AP +G PS P P A P + EPG
Sbjct: 754 DGSPGKDGVRGLTGPIGPPGP----AGAPGDKGESG--PSGPAGPTGARGAPGDRGEPGP 807
Query: 144 PETSGPRAYLRDPGA------------SAALRQVLATGPAQPTSP--RLVSAWSRGARRE 189
P GP + PGA + A GPA P P + + + GA+
Sbjct: 808 P---GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGA 864
Query: 190 RSSRG 194
R S G
Sbjct: 865 RGSAG 869
Score = 35.4 bits (80), Expect = 0.035
Identities = 38/115 (33%), Positives = 43/115 (37%), Gaps = 25/115 (21%)
Query: 43 KGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPA----PRARAHAHSRR----L 94
KGHR G P P PGE+GP + PA P A A + L
Sbjct: 1108 KGHRGFSGLQGPPGPPG---------SPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGL 1158
Query: 95 PASPTGPPETRARLAWA-PRFLPTNGRRPSPPRPPMSA------PTPPLGKSEPG 142
P P GPP R R A P P P PP PP + P PP K+ G
Sbjct: 1159 PG-PIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDG 1212
Score = 35.0 bits (79), Expect = 0.045
Identities = 42/179 (23%), Positives = 54/179 (30%), Gaps = 52/179 (29%)
Query: 27 RESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPA-PRA 85
RE A +G+ G D G + +TG P PG G +P P P
Sbjct: 1014 REGAPGAEGSPGRDGSPGAKGDRGETGPAGP------------PGAPGAPGAPGPVGPAG 1061
Query: 86 RAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPP----------------- 128
++ PA P GP P R P+ P+ P
Sbjct: 1062 KSGDRGETGPAGPAGPVG------------PVGARGPAGPQGPRGDKGETGEQGDRGIKG 1109
Query: 129 -------MSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLAT---GPAQPTSPR 177
P PP E G SGP PG++ A + GP P PR
Sbjct: 1110 HRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPR 1168
Score = 34.7 bits (78), Expect = 0.059
Identities = 42/165 (25%), Positives = 57/165 (34%), Gaps = 13/165 (7%)
Query: 35 GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPA-PRARAHAHSRR 93
G G + G + D G+P P+ R + PGERG + P PA PR A
Sbjct: 650 GPPGEAGKPGEQGVPGDLGAPGPS---GARGERGFPGERGVQGPPGPAGPRGANGAPGND 706
Query: 94 LPASPTGPPETRARLAWAPRFLPTNGRRPSP----PRPPMSAPTPPLGKSEPGEPETSGP 149
G P AP G R + P+ P PG+ G
Sbjct: 707 GAKGDAGAPGAPGSQG-APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGL 765
Query: 150 RAYLRDPGASAALRQVLATGPAQPTSPRLVSAWSRGARRERSSRG 194
+ PG + A +GP+ P P +RGA +R G
Sbjct: 766 TGPIGPPGPAGAPGDKGESGPSGPAGP----TGARGAPGDRGEPG 806
Score = 30.8 bits (68), Expect = 0.85
Identities = 38/142 (26%), Positives = 43/142 (30%), Gaps = 46/142 (32%)
Query: 53 GSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAP 112
GS +PT + T G GP+ P R P P GPP
Sbjct: 98 GSESPTDQETT-------GVEGPKGDTGP-----------RGPRGPAGPPGRDG------ 133
Query: 113 RFLPTNGRRPSPPRPPMSAPTPPLGK------------------SEPGEPETSGPRAYLR 154
+P P PP PP P LG S PG SGPR
Sbjct: 134 --IPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPG 191
Query: 155 DPGASAALRQVLATGPAQPTSP 176
PGA Q P +P P
Sbjct: 192 PPGAPGP--QGFQGPPGEPGEP 211
Score = 29.6 bits (65), Expect = 1.9
Identities = 38/148 (25%), Positives = 46/148 (31%), Gaps = 37/148 (25%)
Query: 35 GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRP-----APRARAHA 89
G G D + G + + D G+ + A PG GP P P AP A+ A
Sbjct: 815 GPPGADGQPGAKGEPGDAGA---------KGDAGPPGPAGPAGPPGPIGNVGAPGAKG-A 864
Query: 90 HSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPP--------------------M 129
P TG P R+ P N P PP P +
Sbjct: 865 RGSAGPPGATGFPGAAGRVG--PPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEV 922
Query: 130 SAPTPPLGKSEPGEPETSGPRAYLRDPG 157
P PP E G P GP PG
Sbjct: 923 GPPGPPGPAGEKGSPGADGPAGAPGTPG 950
Score = 28.1 bits (61), Expect = 5.5
Identities = 32/124 (25%), Positives = 42/124 (33%), Gaps = 14/124 (11%)
Query: 51 DTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAW 110
D G P+ A PG+RG P PA A + P + P + A+
Sbjct: 780 DKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQ-PGAKGEPGDAGAKGDA 838
Query: 111 APRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGP 170
P P P P + P P+G G P G R PGA+ GP
Sbjct: 839 GP---------PGPAGP--AGPPGPIGNV--GAPGAKGARGSAGPPGATGFPGAAGRVGP 885
Query: 171 AQPT 174
P+
Sbjct: 886 PGPS 889
Score = 27.7 bits (60), Expect = 7.2
Identities = 32/113 (28%), Positives = 42/113 (37%), Gaps = 23/113 (20%)
Query: 70 PGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPM 129
PGERGP P P+ +R LP + G P + ++ + + P P
Sbjct: 241 PGERGP-----PGPQG-----ARGLPGT-AGLPGMKGHRGFSGL---DGAKGDAGPAGPK 286
Query: 130 SAPTPPLGKSEPGEPETSGPRAYLRD------PGASAALRQVLATGPAQPTSP 176
P P E G P GPR + PG + A ATG A P P
Sbjct: 287 GEPGSP---GENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGP 336
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 43.5 bits (101), Expect = 1e-04
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 23/133 (17%)
Query: 67 ALGPGERGPEASPR-----PAP-RARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR 120
+LGP E+G ++ R P P R+ + R P++P PP T + A R LPT +
Sbjct: 3776 SLGPKEKGESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPPRTPRKQATPSRVLPTKPK 3835
Query: 121 RPS--PPRPPMSAPTPPLGKSEPGEPETSG--------PRAYLRDPGASAALRQVLATGP 170
S PRPP S K+EPG + R LR P A V P
Sbjct: 3836 PNSQNKPRPPPSEQR----KAEPGHTQRKDRLGKAFPQGRPLLRPPKRGTA---VHGAEP 3888
Query: 171 AQPTSPRLVSAWS 183
A+P + R A S
Sbjct: 3889 AEPHTHRTAEAQS 3901
Score = 30.0 bits (66), Expect = 1.5
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 18/111 (16%)
Query: 53 GSPAPTIRA--HTRRKALGPGE--RGPEASPRPAPRARAHAHSRRLPASPTGPPETRARL 108
G+P PT+ R+ A PG + P PA R A A PE + R
Sbjct: 8 GAPPPTMTGDLQPRQVASSPGHPSQPPLEDNTPATRTTKGAREAGGQAQAMELPEAQPRQ 67
Query: 109 AWAPRFLP----------TNGRRPSPPRPP----MSAPTPPLGKSEPGEPE 145
A P T G+R SP PP + AP+ G++E P+
Sbjct: 68 ARDGELKPPSLRGQAPSSTPGKRGSPQTPPGRSPLQAPSRLAGRAEGSPPQ 118
Score = 30.0 bits (66), Expect = 1.5
Identities = 37/137 (27%), Positives = 46/137 (33%), Gaps = 20/137 (14%)
Query: 69 GPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPP 128
GPG P P A+ A PP + + P+ RP P PP
Sbjct: 155 GPGTGAPLRPGLPRTEAQPAAEELGFHRCFQEPPSSFTSTNYTS---PSATPRPPAPGPP 211
Query: 129 MSAPTPPLGKSEPGEPETSG-----PRAYLRDPGASAALRQVLATGPAQPTSPRLVSAWS 183
S T PL E + SG P A PGA+ PA+P
Sbjct: 212 QSRGTSPLQPGSYPEYQASGADSWPPAAENSFPGAN------FGVPPAEP------EPIP 259
Query: 184 RGARRERSSRGGIFARP 200
+G+R S RG F P
Sbjct: 260 KGSRPGGSPRGVSFQFP 276
Score = 29.6 bits (65), Expect = 1.9
Identities = 24/89 (26%), Positives = 30/89 (33%)
Query: 61 AHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGR 120
A T ++AL GE G + P L PTG AR W PR G
Sbjct: 2679 AETDQEALCAGETGAQKPPGDRMLCPGRMDGAALGEQPTGQKGASARGFWGPRETKALGV 2738
Query: 121 RPSPPRPPMSAPTPPLGKSEPGEPETSGP 149
P + +SE G E + P
Sbjct: 2739 CKESGSEPAEDSSRAHSRSEEGVWEENTP 2767
>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
Length = 851
Score = 43.5 bits (101), Expect = 1e-04
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 52 TGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPT-GPPETRARLAW 110
T P P + + +++ G R P +SP P RA A +R P GPP + L
Sbjct: 752 TPMPPPVDDSWLQVQSVPAGRRSPTSSPTPQRRAPAVPPARPGSRGPAPGPPPAGSALGG 811
Query: 111 APRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEP 144
AP G P P PP P+ P ++ PG P
Sbjct: 812 APPVPSRPGASPDPFGPPPQVPSRP-NRAPPGVP 844
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 43.5 bits (101), Expect = 1e-04
Identities = 39/142 (27%), Positives = 52/142 (36%), Gaps = 23/142 (16%)
Query: 44 GHRKQLEDTGSPA---PTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTG 100
G + + G PA P + + GP +GP RP P+ + H S G
Sbjct: 445 GRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQH-------LSGLG 497
Query: 101 PPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSE------PGEPETSGPRAY-- 152
PP P+ LP+ P P + PT G+ PG P + P A
Sbjct: 498 PPAGSP----LPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS 553
Query: 153 -LRDPGASAALRQVLATGPAQP 173
R G A RQ +GPA P
Sbjct: 554 PQRQAGPPQATRQTSVSGPAPP 575
Score = 37.0 bits (84), Expect = 0.012
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 18/128 (14%)
Query: 63 TRRKALGPGE---RGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNG 119
+R A GPG P ASP P +A +R+ S PP + + AP P
Sbjct: 533 SRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPP----KASGAP---PGGQ 585
Query: 120 RRPSPPRPP--MSAPTPPLGKSEP----GEPETSGPRAYLRDPGASAALRQVLATGPAQP 173
+R PP+ P + PT ++ P G P T PR PG + + LA P+Q
Sbjct: 586 QRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRP--SGPGPAGRPKPQLAQKPSQD 643
Query: 174 TSPRLVSA 181
P +A
Sbjct: 644 VPPPATAA 651
Score = 33.1 bits (74), Expect = 0.17
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 20/124 (16%)
Query: 54 SPAPTIRA---HTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAW 110
SP+P +A R+ G P+AS P P + + P P GP ++
Sbjct: 551 SPSPQRQAGPPQATRQTSVSGPAPPKASGAP-PGGQQRQGPPQKPPGPAGPTRQASQAGP 609
Query: 111 APRFLPTNGRRPSPPRP-PMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATG 169
PR P ++P P P P P P L + +P P P A+AA A G
Sbjct: 610 VPRTGPPTTQQPRPSGPGPAGRPKPQLAQ----KPSQDVP------PPATAA-----AGG 654
Query: 170 PAQP 173
P P
Sbjct: 655 PPHP 658
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 43.5 bits (101), Expect = 1e-04
Identities = 39/142 (27%), Positives = 52/142 (36%), Gaps = 23/142 (16%)
Query: 44 GHRKQLEDTGSPA---PTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTG 100
G + + G PA P + + GP +GP RP P+ + H S G
Sbjct: 445 GRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQH-------LSGLG 497
Query: 101 PPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSE------PGEPETSGPRAY-- 152
PP P+ LP+ P P + PT G+ PG P + P A
Sbjct: 498 PPAGSP----LPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS 553
Query: 153 -LRDPGASAALRQVLATGPAQP 173
R G A RQ +GPA P
Sbjct: 554 PQRQAGPPQATRQTSVSGPAPP 575
Score = 37.0 bits (84), Expect = 0.012
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 18/128 (14%)
Query: 63 TRRKALGPGE---RGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNG 119
+R A GPG P ASP P +A +R+ S PP + + AP P
Sbjct: 533 SRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPP----KASGAP---PGGQ 585
Query: 120 RRPSPPRPP--MSAPTPPLGKSEP----GEPETSGPRAYLRDPGASAALRQVLATGPAQP 173
+R PP+ P + PT ++ P G P T PR PG + + LA P+Q
Sbjct: 586 QRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRP--SGPGPAGRPKPQLAQKPSQD 643
Query: 174 TSPRLVSA 181
P +A
Sbjct: 644 VPPPATAA 651
Score = 33.1 bits (74), Expect = 0.17
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 20/124 (16%)
Query: 54 SPAPTIRA---HTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAW 110
SP+P +A R+ G P+AS P P + + P P GP ++
Sbjct: 551 SPSPQRQAGPPQATRQTSVSGPAPPKASGAP-PGGQQRQGPPQKPPGPAGPTRQASQAGP 609
Query: 111 APRFLPTNGRRPSPPRP-PMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATG 169
PR P ++P P P P P P L + +P P P A+AA A G
Sbjct: 610 VPRTGPPTTQQPRPSGPGPAGRPKPQLAQ----KPSQDVP------PPATAA-----AGG 654
Query: 170 PAQP 173
P P
Sbjct: 655 PPHP 658
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 43.5 bits (101), Expect = 1e-04
Identities = 50/174 (28%), Positives = 68/174 (39%), Gaps = 23/174 (13%)
Query: 30 AVQRQGTAGHDLRKGHRKQLEDTGSPAPTIR----AHTRRKALGPGERGPEASPRPAPRA 85
+V R AG +G R++ GSPAP R + ++K ER E R
Sbjct: 378 SVHRCAPAGE---RGERRKPNAGGSPAPVRRRPEASPVQKKEKKDKERENEKEKSALARE 434
Query: 86 RAHAHSRRLPASPTGPPETRARL--AWAPRFLPTNGRRPSPP-----RPPMSAPTPPLGK 138
R+ + LPASP RARL + A P + RPS P RP P+P G
Sbjct: 435 RSLKKRQSLPASP------RARLSASTASELSPKSKARPSSPSTSWHRPASPCPSPGPGH 488
Query: 139 SEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVSAWSRGARRERSS 192
+ P P+ PR P ++ P+ P S R A E+ S
Sbjct: 489 TLP--PKPPSPRGTTASPKGRVRRKEEAKESPS-AAGPEDKSQSKRRASNEKES 539
Score = 35.0 bits (79), Expect = 0.045
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 70 PGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPM 129
P RG ASP+ R + A A P +++ R + PSP P
Sbjct: 495 PSPRGTTASPKGRVRRKEEAKESPSAAGPEDKSQSKRRASNEKESAAPASPAPSPA--PS 552
Query: 130 SAPTPPLGKSEPGEPETSGPRAYLRDPGASA---ALRQVLATGPAQPTSPRLVSAWSRGA 186
P PP + P E T A L P A A + +A + + RL++ R A
Sbjct: 553 PTPAPPQKEQPPAETPTDA--AVLTSPPAPAPPVTPSKPMAGTTDREEATRLLAEKRRQA 610
Query: 187 RRER 190
R +R
Sbjct: 611 REQR 614
Score = 32.3 bits (72), Expect = 0.29
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 101 PPETRARLAWAPRFLPTNGRRPSPPRPPMSA-------PTPPL------GKSEPGEPETS 147
PP AR PR P+ PSPP PPMSA TPP K P EPE+
Sbjct: 14 PPAVVARTPPEPR--PSPEGDPSPPPPPMSALVPDTPPDTPPAMKNATSSKQLPLEPESP 71
Query: 148 ----GPRAYLRDPGASAALRQVLATGPAQP 173
GPR P + + + GP P
Sbjct: 72 SGQVGPRP--APPQEESPSSEAKSRGPTPP 99
Score = 31.2 bits (69), Expect = 0.65
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 34 QGTAGHDLRKGHRKQ--LEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHS 91
+GT + RK+ E + P ++ ++R+A E ASP P+P
Sbjct: 498 RGTTASPKGRVRRKEEAKESPSAAGPEDKSQSKRRASNEKESAAPASPAPSP-------- 549
Query: 92 RRLPASPTGPPETRARLAWAPRFLPTNGR-RPSPPRPPMSAPTPPLGKSEP 141
P+ PP+ P PT+ SPP AP PP+ S+P
Sbjct: 550 --APSPTPAPPQKEQ----PPAETPTDAAVLTSPP-----APAPPVTPSKP 589
Score = 29.6 bits (65), Expect = 1.9
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 55 PAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRF 114
PA +++ L P + PRPAP S PT PP R A PR
Sbjct: 53 PAMKNATSSKQLPLEPESPSGQVGPRPAPPQEESPSSEAKSRGPT-PPAMGPRDARPPR- 110
Query: 115 LPTNGRRPSPPRPPMSAPTP 134
+PSP P S P
Sbjct: 111 ---RSSQPSPTAVPASDSPP 127
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 43.1 bits (100), Expect = 2e-04
Identities = 48/191 (25%), Positives = 66/191 (34%), Gaps = 16/191 (8%)
Query: 11 KGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIRAHT------R 64
+ S+ G + E + + + G G R + + SP+P R R
Sbjct: 491 QSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSR----SASPSPRKRQKETSPRGRR 546
Query: 65 RKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSP 124
R++ P SP PAP R P T P R R R+ P RR SP
Sbjct: 547 RRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSP 606
Query: 125 PRPP----MSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSPRLVS 180
PP S P PP ++ P P R P + P+ + R S
Sbjct: 607 SPPPKRRTASPPPPPKRRASPSPPPKR--RVSHSPPPKQRSSPVTKRRSPSLSSKHRKGS 664
Query: 181 AWSRGARRERS 191
+ SR R RS
Sbjct: 665 SPSRSTREARS 675
Score = 41.2 bits (95), Expect = 6e-04
Identities = 40/150 (26%), Positives = 58/150 (38%), Gaps = 16/150 (10%)
Query: 9 PHKGESELGRKDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKAL 68
P K E +D +VQ++ R+ +++ D+GS + + +R +
Sbjct: 457 PRKVELSESEEDKGGKMAAADSVQQR----RQYRRQNQQSSSDSGSSSSSEDERPKRSHV 512
Query: 69 GPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRR-PSPPRP 127
GE G P+ A R+ SP G R +P PT RR PSP P
Sbjct: 513 KNGEVGRRRRHSPSRSASPSPRKRQKETSPRG------RRRRSPSPPPTRRRRSPSPAPP 566
Query: 128 PMS--APTPPLGKSEPGEP---ETSGPRAY 152
P PTPP + P P + PR Y
Sbjct: 567 PRRRRTPTPPPRRRTPSPPPRRRSPSPRRY 596
Score = 35.0 bits (79), Expect = 0.045
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 26/146 (17%)
Query: 29 SAVQRQGTA-GHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPR----PAP 83
S+ R+G++ R+ Q SP+P RA + P RG +SP+ P+P
Sbjct: 657 SSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSP 716
Query: 84 RARAHAHSRRLP--------ASPTGPPETRA----RLAWAPRFLPTNGRRPSPPRPPMS- 130
R R P ASP+ R ++ +P P + P+PP P S
Sbjct: 717 STRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPE--PAAKKPPAPPSPVQSQ 774
Query: 131 ------APTPPLGKSEPGEPETSGPR 150
+P P+ K++ P S PR
Sbjct: 775 SPSTNWSPAVPVKKAKSPTPSPSPPR 800
Score = 32.7 bits (73), Expect = 0.22
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 7/142 (4%)
Query: 19 KDAKATETRESAVQRQGTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEAS 78
KD + E +ES+ +++ + R+ R S +P R R + P R S
Sbjct: 151 KDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRS-SPVRRERKRSHSRSPRHRTKSRS 209
Query: 79 PRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSP-PRPPMSAPTPPLG 137
P PAP + P+ P + + + + P P P P P+P
Sbjct: 210 PSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDIL-----KVPKPEPIPEPKEPSPEKN 264
Query: 138 KSEPGEPETSGPRAYLRDPGAS 159
+ E E + PR+ R S
Sbjct: 265 SKKEKEKEKTRPRSRSRSKSRS 286
Score = 32.3 bits (72), Expect = 0.29
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 19/164 (11%)
Query: 47 KQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRA 106
K+ ++ P R+ ++ ++ PR R+R+ ++S R SP P R
Sbjct: 266 KKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRR 325
Query: 107 RLAWAPRFL---PTNGRRPSPPR----------PPMSAPTPPLGKSEPGEP--ETSGPRA 151
R PR + P + R SP R S+ + +S P +P TS P
Sbjct: 326 RT--PPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPR 383
Query: 152 YLR--DPGASAALRQVLATGPAQPTSPRLVSAWSRGARRERSSR 193
R P AS R+ + PA P S + + R R SR
Sbjct: 384 KTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSR 427
Score = 30.8 bits (68), Expect = 0.85
Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 25/156 (16%)
Query: 54 SPAPTIRAHTRRKALGPGERGPEASPRPAPRAR-AHAHSRRLPASPT------------- 99
SP+P + RR A P ASP P P+ R +H+ + +SP
Sbjct: 605 SPSPPPK---RRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHR 661
Query: 100 --GPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPG 157
P R A +P+ + P P P S+ PP+ + P+ + P
Sbjct: 662 KGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRR------QSPS 715
Query: 158 ASAALRQVLATGPAQPTSPRLVSAWSRGARRERSSR 193
S + ++ P + S + RR SSR
Sbjct: 716 PSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSR 751
>gi|239745038 PREDICTED: hypothetical protein XP_002343338 [Homo
sapiens]
Length = 244
Score = 42.7 bits (99), Expect = 2e-04
Identities = 39/142 (27%), Positives = 51/142 (35%), Gaps = 16/142 (11%)
Query: 60 RAHTRRKALGPG--ERGPEASPRP-------APRARAHAHSRRLPASPTG--PPETRARL 108
R+H R ++ G E + SPRP P + R+P PT PP R L
Sbjct: 3 RSHPRIRSFGAAWPEEKADLSPRPRFLATPRVPGTPTYQLPPRIPGPPTTRQPPRVRDHL 62
Query: 109 AWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPET-----SGPRAYLRDPGASAALR 163
+ + RPS P P + ++ P P GP + P S A
Sbjct: 63 HLSCPRASQDRPRPSCPLASRDRRRPAIPRASPDRPRPISPAPPGPPTSRQSPRISVAAA 122
Query: 164 QVLATGPAQPTSPRLVSAWSRG 185
VL P PT R V RG
Sbjct: 123 PVLPAAPRPPTQRRCVPVAQRG 144
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 42.4 bits (98), Expect = 3e-04
Identities = 41/134 (30%), Positives = 49/134 (36%), Gaps = 27/134 (20%)
Query: 53 GSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPE-TRARLAWA 111
GSP PT +K PG PE AH P SP PP T + A
Sbjct: 1241 GSPTPT-----SKKVPLPGPGSPEVK---------RAHGTPPPVSPKPPPPPTAPKPVKA 1286
Query: 112 PRFLPTNGRRPSPPRPPMSAP---------TPPLGKSEPGEPETSGPRAY---LRDPGAS 159
LP+ PSP P P TPP + P +P + G A + P A+
Sbjct: 1287 VAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAA 1346
Query: 160 AALRQVLATGPAQP 173
AA A PA P
Sbjct: 1347 AAAAAAAAAPPAPP 1360
Score = 41.2 bits (95), Expect = 6e-04
Identities = 41/136 (30%), Positives = 52/136 (38%), Gaps = 25/136 (18%)
Query: 70 PGERGPEASPRPAPRARAHAHS----RRLPASP-TGPPETR----------ARLAWAPRF 114
P + EA P P P + + RR PAS GPPE LA P
Sbjct: 1152 PKAKEREAGPEPPPPLSVYHNGTGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAHLPPL 1211
Query: 115 LPTNGRRPSPPRPPMSAPTPPLGKSEP---GEPETSGPRAYLRDPGASAALR------QV 165
P G P +PP+S P P L + P G P + + L PG+ R V
Sbjct: 1212 PPPEGEARKPAKPPVS-PKPVLTQPVPKLQGSPTPTSKKVPLPGPGSPEVKRAHGTPPPV 1270
Query: 166 LATGPAQPTSPRLVSA 181
P PT+P+ V A
Sbjct: 1271 SPKPPPPPTAPKPVKA 1286
Score = 39.7 bits (91), Expect = 0.002
Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 8/126 (6%)
Query: 55 PAPTIRAHTRRKALGPGERGPEAS-PRPAPRARAHAHSRRLPASPTGPPETRARLAWAPR 113
P P R+ A P P + P P + S+++P G PE + P
Sbjct: 1210 PLPPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPTPTSKKVPLPGPGSPEVKRAHGTPPP 1269
Query: 114 FLPTNGRRPSPPRPPMSAPTPPLGKSEPG---EPETSGPRAYLRDPGASAALRQVLATGP 170
P P+ P+P + P G + P P P A + PG + L P
Sbjct: 1270 VSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPS----LGASP 1325
Query: 171 AQPTSP 176
A+P SP
Sbjct: 1326 AKPPSP 1331
Score = 33.5 bits (75), Expect = 0.13
Identities = 46/174 (26%), Positives = 63/174 (36%), Gaps = 39/174 (22%)
Query: 5 LGESPHKGESELGRKD--------AKATETRESAVQRQGTAGHDLRK-------GHRKQL 49
LG+ P S + R A T RE+ R G GH +++ G +Q+
Sbjct: 710 LGDGPPGPSSPMSRSQEYLLDEGPAPGTPPREA---RPGRHGHSIKRASVPPVPGKPRQV 766
Query: 50 EDTGSP------APTIRAHTRRKALGPGERGPE---ASPRPAPRARAHAHSRRLPASPTG 100
G+ PT +ALG G GP A +P P+ P S
Sbjct: 767 LPPGTSHFTPPQTPTKTRPGSPQALG-GPHGPAPATAKVKPTPQLLPPTERPMSPRSLPQ 825
Query: 101 PPETRARLAWAPRFLPTNGR------RPSPPRPPMSAPT---PPLGKSEPGEPE 145
P R P+ P G P+PP P + PT PP +EPG P+
Sbjct: 826 SPTHRGFAYVLPQ--PVEGEVGPAAPGPAPPPVPTAVPTLCLPPEADAEPGRPK 877
>gi|7710129 LIM domain only 6 [Homo sapiens]
Length = 615
Score = 42.4 bits (98), Expect = 3e-04
Identities = 41/128 (32%), Positives = 47/128 (36%), Gaps = 17/128 (13%)
Query: 67 ALGPGERGPEASPRPAPRARAHAHSRRLP--------------ASPTGPPETRARLAWAP 112
A GP R A P AP A + A + A TGP E L AP
Sbjct: 374 APGPSRRSWSAGPVTAPLAASTASFSAVKGASETTTKGTSTELAPATGPEEPSRFLRGAP 433
Query: 113 R--FLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGAS-AALRQVLATG 169
+P G R P PP S P L + S PR RDP S R+ L+
Sbjct: 434 HRHSMPELGLRSVPEPPPESPGQPNLRPDDSAFGRQSTPRVSFRDPLVSEGGPRRTLSAP 493
Query: 170 PAQPTSPR 177
PAQ PR
Sbjct: 494 PAQRRRPR 501
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 42.4 bits (98), Expect = 3e-04
Identities = 43/150 (28%), Positives = 58/150 (38%), Gaps = 27/150 (18%)
Query: 50 EDTGSPAPTIRAHTRRKALGPGERGPE-ASPRPAPRARAHAHSRRLP-------ASPTGP 101
E SPA + + T + PG P A P PAP + A H +LP + GP
Sbjct: 810 ELVSSPAASSSSATALQIQPPGSPDPPPAPPAPAPASSAPGHVAKLPQKEPVGCSKGGGP 869
Query: 102 PE---------------TRARLAWAPRFLPTNGRRPSPPRPPMSAPTPPLGKSEPGEPET 146
P R R AP PT PS P+ P+ G++ P +
Sbjct: 870 PREDVGAPLVTPSLLQMVRLRSVGAPGGAPTPALGPSAPQKPLRRALS--GRASPVPAPS 927
Query: 147 SGPRAYLRDPGASAALRQVLATGPAQPTSP 176
SG A +R S A + L++ AQP P
Sbjct: 928 SGLHAAVRLKACSLAASEGLSS--AQPNGP 955
Score = 36.2 bits (82), Expect = 0.020
Identities = 40/142 (28%), Positives = 49/142 (34%), Gaps = 32/142 (22%)
Query: 46 RKQLEDTGSPAPTIRAHTRRKALGPGERG----PEASPRPA-PRARAHAHSRRLPASPTG 100
RK P T H R A+ G G PE +P PR S A+P
Sbjct: 492 RKLKRPPPPPRRTHSLHQRGLAVPDGPLGLPPKPERKQQPQLPRPPTTGGSEGAGAAPCP 551
Query: 101 PPETRARLAWAPRFLPTNGRRP-------------------SPPRPPMSAPTPPL--GKS 139
P + W P P RRP +P PP PP GK+
Sbjct: 552 PNPANS---WVPGLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKA 608
Query: 140 EPGEPETSGPRAYLRDPGASAA 161
+P +PE LR PGAS +
Sbjct: 609 QPPKPERV---TSLRSPGASVS 627
Score = 36.2 bits (82), Expect = 0.020
Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 34/177 (19%)
Query: 53 GSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPAS-----------PTGP 101
G+P P + +K L G ASP PAP + HA R S P GP
Sbjct: 897 GAPTPALGPSAPQKPLRRALSG-RASPVPAPSSGLHAAVRLKACSLAASEGLSSAQPNGP 955
Query: 102 PETRARLAWAP----RFLPTNGRRPSPPRPPMSAPT-PPLGKSEPGE----PETSGPRAY 152
PE R +P F+ + G R P+S T L ++ E E P+A
Sbjct: 956 PEAEPRPPQSPASTASFIFSKGSRKLQLERPVSPETQADLQRNLVAELRSISEQRPPQAP 1015
Query: 153 LRDPGASAALRQVLATG---PAQPTSPR---LVSAWSRG-------ARRERSSRGGI 196
+ P A + + + G PA P+ PR L + + G +RE + GG+
Sbjct: 1016 KKSPKAPPPVARKPSVGVPPPASPSYPRAEPLTAPPTNGLPHTQDRTKRELAENGGV 1072
Score = 32.3 bits (72), Expect = 0.29
Identities = 31/110 (28%), Positives = 38/110 (34%), Gaps = 16/110 (14%)
Query: 75 PEASPR-PAPRARAHAHSRRLP-------ASPTGPPETRARLAWAPRFLPTNGRRPSPPR 126
P + PR P P A A A +P ASP PP + L + + PP
Sbjct: 673 PPSKPRSPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPLQESPVISKDQSPPPS 732
Query: 127 PPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSP 176
PP S PP P T P + P AS + L P P
Sbjct: 733 PPPSYHPPP--------PPTKKPEVVVEAPSASETAEEPLQDPNWPPPPP 774
Score = 32.0 bits (71), Expect = 0.38
Identities = 42/137 (30%), Positives = 48/137 (35%), Gaps = 15/137 (10%)
Query: 77 ASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAP---- 132
ASP PA + S L +SP + L P P P P P SAP
Sbjct: 798 ASPEPA----GPSGSPELVSSPAASSSSATALQIQPPGSPDPPPAPPAPAPASSAPGHVA 853
Query: 133 ----TPPLGKSEPGEPETSGPRAYLRDPG--ASAALRQVLATGPAQPTSPRLVSAWSRGA 186
P+G S+ G P A L P LR V A G A PT SA +
Sbjct: 854 KLPQKEPVGCSKGGGPPREDVGAPLVTPSLLQMVRLRSVGAPGGA-PTPALGPSAPQKPL 912
Query: 187 RRERSSRGGIFARPRWG 203
RR S R P G
Sbjct: 913 RRALSGRASPVPAPSSG 929
Score = 28.1 bits (61), Expect = 5.5
Identities = 28/92 (30%), Positives = 31/92 (33%), Gaps = 14/92 (15%)
Query: 70 PGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPM 129
P P P P A P SP P T L +P PSPP P
Sbjct: 685 PALAAPAVVPGPVSTTDAS------PQSPPTPQTTLTPLQESPVISKDQSPPPSPP-PSY 737
Query: 130 SAPTPPLGKSE-----PGEPETSGPRAYLRDP 156
P PP K E P ET+ L+DP
Sbjct: 738 HPPPPPTKKPEVVVEAPSASETA--EEPLQDP 767
Score = 27.7 bits (60), Expect = 7.2
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 18/125 (14%)
Query: 53 GSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAP 112
G PA +A + R P AS + + + S P+ +GP +
Sbjct: 600 GPPASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGP---QILTPLGD 656
Query: 113 RF-LPTNGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPA 171
RF +P + + P+P PP S P P P P + P A + ++T A
Sbjct: 657 RFVIPPHPKVPAPFSPPPSKPRSP----NPAAPALAAP----------AVVPGPVSTTDA 702
Query: 172 QPTSP 176
P SP
Sbjct: 703 SPQSP 707
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,946,312
Number of Sequences: 37866
Number of extensions: 858024
Number of successful extensions: 10942
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 1447
Number of HSP's that attempted gapping in prelim test: 5988
Number of HSP's gapped (non-prelim): 4623
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.