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Search of human proteins with 239750970
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
(513 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens] 1050 0.0
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ... 1050 0.0
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ... 1050 0.0
gi|48762934 alpha 2 type I collagen [Homo sapiens] 56 7e-08
gi|110832843 TBP-associated factor 4 [Homo sapiens] 50 6e-06
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 49 8e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 46 7e-05
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 45 1e-04
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 45 1e-04
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 45 1e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 45 2e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 45 2e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 44 5e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 44 5e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 44 5e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 44 5e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 44 5e-04
gi|13540521 basic helix-loop-helix domain containing, class B, 3... 44 5e-04
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 43 6e-04
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 43 6e-04
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 43 6e-04
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 43 6e-04
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens] 43 8e-04
gi|113430659 PREDICTED: hypothetical protein [Homo sapiens] 43 8e-04
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 43 8e-04
gi|113430175 PREDICTED: hypothetical protein [Homo sapiens] 43 8e-04
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens] 42 0.001
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 42 0.002
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 42 0.002
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 42 0.002
>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 1050 bits (2714), Expect = 0.0
Identities = 513/513 (100%), Positives = 513/513 (100%)
Query: 1 MVFRPQVAPRRMSVSRRSPTMTVRSGLMPYSWDTQSKMKRLGFPMMSAWRWAAISTARTR 60
MVFRPQVAPRRMSVSRRSPTMTVRSGLMPYSWDTQSKMKRLGFPMMSAWRWAAISTARTR
Sbjct: 1 MVFRPQVAPRRMSVSRRSPTMTVRSGLMPYSWDTQSKMKRLGFPMMSAWRWAAISTARTR 60
Query: 61 HPGARTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQR 120
HPGARTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQR
Sbjct: 61 HPGARTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQR 120
Query: 121 RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRA 180
RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRA
Sbjct: 121 RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRA 180
Query: 181 EDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAP 240
EDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAP
Sbjct: 181 EDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAP 240
Query: 241 QHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGAL 300
QHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGAL
Sbjct: 241 QHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGAL 300
Query: 301 PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL 360
PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL
Sbjct: 301 PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL 360
Query: 361 AGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAV 420
AGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAV
Sbjct: 361 AGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAV 420
Query: 421 HWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFP 480
HWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFP
Sbjct: 421 HWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFP 480
Query: 481 GRREYAPQSFAKTRSRFLGGNTNQPLPGWGIRV 513
GRREYAPQSFAKTRSRFLGGNTNQPLPGWGIRV
Sbjct: 481 GRREYAPQSFAKTRSRFLGGNTNQPLPGWGIRV 513
>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
Length = 513
Score = 1050 bits (2714), Expect = 0.0
Identities = 513/513 (100%), Positives = 513/513 (100%)
Query: 1 MVFRPQVAPRRMSVSRRSPTMTVRSGLMPYSWDTQSKMKRLGFPMMSAWRWAAISTARTR 60
MVFRPQVAPRRMSVSRRSPTMTVRSGLMPYSWDTQSKMKRLGFPMMSAWRWAAISTARTR
Sbjct: 1 MVFRPQVAPRRMSVSRRSPTMTVRSGLMPYSWDTQSKMKRLGFPMMSAWRWAAISTARTR 60
Query: 61 HPGARTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQR 120
HPGARTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQR
Sbjct: 61 HPGARTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQR 120
Query: 121 RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRA 180
RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRA
Sbjct: 121 RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRA 180
Query: 181 EDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAP 240
EDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAP
Sbjct: 181 EDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAP 240
Query: 241 QHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGAL 300
QHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGAL
Sbjct: 241 QHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGAL 300
Query: 301 PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL 360
PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL
Sbjct: 301 PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL 360
Query: 361 AGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAV 420
AGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAV
Sbjct: 361 AGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAV 420
Query: 421 HWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFP 480
HWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFP
Sbjct: 421 HWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFP 480
Query: 481 GRREYAPQSFAKTRSRFLGGNTNQPLPGWGIRV 513
GRREYAPQSFAKTRSRFLGGNTNQPLPGWGIRV
Sbjct: 481 GRREYAPQSFAKTRSRFLGGNTNQPLPGWGIRV 513
>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
sapiens]
Length = 513
Score = 1050 bits (2714), Expect = 0.0
Identities = 513/513 (100%), Positives = 513/513 (100%)
Query: 1 MVFRPQVAPRRMSVSRRSPTMTVRSGLMPYSWDTQSKMKRLGFPMMSAWRWAAISTARTR 60
MVFRPQVAPRRMSVSRRSPTMTVRSGLMPYSWDTQSKMKRLGFPMMSAWRWAAISTARTR
Sbjct: 1 MVFRPQVAPRRMSVSRRSPTMTVRSGLMPYSWDTQSKMKRLGFPMMSAWRWAAISTARTR 60
Query: 61 HPGARTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQR 120
HPGARTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQR
Sbjct: 61 HPGARTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQR 120
Query: 121 RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRA 180
RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRA
Sbjct: 121 RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRA 180
Query: 181 EDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAP 240
EDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAP
Sbjct: 181 EDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAP 240
Query: 241 QHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGAL 300
QHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGAL
Sbjct: 241 QHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGAL 300
Query: 301 PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL 360
PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL
Sbjct: 301 PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL 360
Query: 361 AGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAV 420
AGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAV
Sbjct: 361 AGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAV 420
Query: 421 HWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFP 480
HWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFP
Sbjct: 421 HWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFP 480
Query: 481 GRREYAPQSFAKTRSRFLGGNTNQPLPGWGIRV 513
GRREYAPQSFAKTRSRFLGGNTNQPLPGWGIRV
Sbjct: 481 GRREYAPQSFAKTRSRFLGGNTNQPLPGWGIRV 513
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 56.2 bits (134), Expect = 7e-08
Identities = 100/363 (27%), Positives = 122/363 (33%), Gaps = 47/363 (12%)
Query: 135 GPHAHAGDAHGLQLRGQGWAAQHVGLG--RGGAGQALAQVERGAVG-RAEDLQAGA-GPR 190
GP + G+ + G + GL RG AG + E+G G R E G G R
Sbjct: 616 GPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGAR 675
Query: 191 GAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQG----------LGRARHGGLPAP 240
GA A VG+ G A GD +A AAG P G +G A G P
Sbjct: 676 GAPGA-------VGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGP 728
Query: 241 QHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGAL 300
A + G + G V PP A R G
Sbjct: 729 AGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSR------GDGGP 782
Query: 301 PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL 360
P G A R P + PP PP G E RG RGD +GR G+
Sbjct: 783 PGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGK-----EGLRGPRGDQ--GPVGRTGEVG 835
Query: 361 AGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAV 420
A P F + K GE+ P PG +G L + G G+ AV
Sbjct: 836 AVGPPGFAGE----KGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAV 891
Query: 421 HWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFP 480
P P G +AG P GA P AV P G + G R G P R P
Sbjct: 892 GEP-GPLG----IAGPP--GARGPPGAVGSPGVNGAPGEAG--RDGNPGNDGPPGRDGQP 942
Query: 481 GRR 483
G +
Sbjct: 943 GHK 945
Score = 48.5 bits (114), Expect = 1e-05
Identities = 89/324 (27%), Positives = 105/324 (32%), Gaps = 40/324 (12%)
Query: 135 GPHAHAGDAHGLQLRGQGWAAQHVGLG--RGGAGQALAQVERGAVG-RAEDLQAG-AGPR 190
GP AG RG+ A G G AGQ A+ ERGA G + E+ G GP
Sbjct: 700 GPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPV 759
Query: 191 GAAEAQAPQ-----LLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAPQHAVA 245
GAA P G G + G A G P G+ G P P
Sbjct: 760 GAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGIS-----GPPGPPGPAG 814
Query: 246 VEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGA 305
E R G Q P+G V G A P +G L APG
Sbjct: 815 KEGLRGPRGDQG--PVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGI 872
Query: 306 LIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLP-ALGRPGDWLAGLQ 364
L P R R L P G P+G A G G P A+G PG + G
Sbjct: 873 LGLPGSRGERGL-------PGVAGAVGEPGPLGIA--GPPGARGPPGAVGSPG--VNGAP 921
Query: 365 PAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPV 424
G R G R PG +G + + +G P H PV
Sbjct: 922 GEAG-----RDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVG-------AAGAPGPHGPV 969
Query: 425 SPAGMGGALAGAPREGAGAPSSAV 448
PAG G G P+ AV
Sbjct: 970 GPAGKHGNRGETGPSGPVGPAGAV 993
Score = 37.4 bits (85), Expect = 0.033
Identities = 81/322 (25%), Positives = 102/322 (31%), Gaps = 58/322 (18%)
Query: 163 GGAGQALAQVERGAVGR-----AEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQ 217
G G A A RG VG ++ G G+A Q P G +G G +
Sbjct: 331 GPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPP----GPSGEEGKRGPNGE 386
Query: 218 ALAAGSQRPQGL-GRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLR 276
A +AG P GL G GLP V + P G++ + G
Sbjct: 387 AGSAGPPGPPGLRGSPGSRGLPGADGRAGV-----------MGPPGSRGASGPAGVRGPN 435
Query: 277 RRHRRPPAAAARRP---------LLAAARRGALPAPG-----ALIGPAPRARRPLACTFA 322
RP P + A + G + PG IGPA P F
Sbjct: 436 GDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFP 495
Query: 323 NPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPG-DWLAGLQPAFGVKRSLRKCARGES 381
P P G + G A G G A G PG D G Q G + + +GE
Sbjct: 496 GPKGPTGDPGKNGDKGHA--GLAG-----ARGAPGPDGNNGAQGPPGPQGV--QGGKGEQ 546
Query: 382 SAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGA 441
P F G GP V G+ LHG PAG G GA
Sbjct: 547 GPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGL-------PGPAGPRGERGPPGESGA 599
Query: 442 GAPSSAVPVPLCRGRARDTGPP 463
P+ + G +GPP
Sbjct: 600 AGPTGPI------GSRGPSGPP 615
Score = 36.2 bits (82), Expect = 0.073
Identities = 89/336 (26%), Positives = 108/336 (32%), Gaps = 87/336 (25%)
Query: 173 ERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQG---- 228
ERG VG GP GA + VG G A +G G+ P+G
Sbjct: 221 ERGRVG-------APGPAGARGSDG----SVGPVGPAGPIGSAGPPGFPGAPGPKGEIGA 269
Query: 229 LGRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAAR 288
+G A G P+ V + VG P G P A G+ TG + AA
Sbjct: 270 VGNAGPAGPAGPRGEVGLPGLSGPVG-----PPG-NPGANGL--TGAK--------GAAG 313
Query: 289 RPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDH 348
P +A A LP P + GP A A P P G S GE G G
Sbjct: 314 LPGVAGAP--GLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEP--GSAGPQ 369
Query: 349 WLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDE 408
G PG +G + G GE+ + P PG RG S G
Sbjct: 370 -----GPPGP--SGEEGKRG--------PNGEAGSAGPPGPPGLRG---------SPGSR 405
Query: 409 ALHGV-----TRARPAVHWPVSPAGMGGALAGAPREG----------AGAPSSAVP---- 449
L G P PAG+ G A R G G+P + P
Sbjct: 406 GLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKE 465
Query: 450 ----VPLCRGRARDTGPPRGSLTGQSREPARGSFPG 481
+P GR GP G EP FPG
Sbjct: 466 GPVGLPGIDGRPGPIGP-----AGARGEPGNIGFPG 496
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 49.7 bits (117), Expect = 6e-06
Identities = 84/303 (27%), Positives = 103/303 (33%), Gaps = 41/303 (13%)
Query: 175 GAVGRAEDLQAGAGPRGAAE-AQAPQLLGVGSAGLAAVVGD-----EAQALAAGSQRPQG 228
G+ G + A A E A A G A LAA G G +P G
Sbjct: 132 GSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAG 191
Query: 229 LGRAR----HGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPP- 283
G A+ L HA A V+ G L PL +P A G V + PP
Sbjct: 192 PGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPL-PKPAAPGTVI-------QTPPF 243
Query: 284 AAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRG 343
AA P AA A PAP A AP P T A PP PAG ++AP
Sbjct: 244 VGAAAPPAPAAPSPPAAPAPAAPAA-APPPPPPAPATLARPPGHPAGPPTAAPAVPP--- 299
Query: 344 ERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVV 403
PA + G AG PA G+ GA P KRVV
Sbjct: 300 -------PAAAQNGG-SAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVV 351
Query: 404 SLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPP 463
A + + PA + + G +GA +AVP P TG P
Sbjct: 352 QAAPPAAQTLAASGPA-------STAASMVIGPTMQGALPSPAAVPPP---APGTPTGLP 401
Query: 464 RGS 466
+G+
Sbjct: 402 KGA 404
Score = 38.1 bits (87), Expect = 0.019
Identities = 66/268 (24%), Positives = 84/268 (31%), Gaps = 31/268 (11%)
Query: 260 PLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALI---GPAPRARRP 316
P GA A G PP A RP +R P+P + GPAP A +
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKL 126
Query: 317 LACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPA----LGRPGDWLAGLQPAFGVKRS 372
PPP GS AP+ A G PA P A P G
Sbjct: 127 R-------PPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP- 178
Query: 373 LRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRAR--PAVHWPV-SPAGM 429
G +P PG L +++ A V+ PA P+ PA
Sbjct: 179 ----GPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAP 234
Query: 430 GGALAGAPREGAGAPSS-------AVPVPLCRGRARDTGPPRGSLTGQSREPARGSFPGR 482
G + P GA AP + A P P A PP + +R P + P
Sbjct: 235 GTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL--ARPPGHPAGPPT 292
Query: 483 REYAPQSFAKTRSRFLGGNTNQPLPGWG 510
A A ++ G P P G
Sbjct: 293 AAPAVPPPAAAQNGGSAGAAPAPAPAAG 320
Score = 30.4 bits (67), Expect = 4.0
Identities = 19/37 (51%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 425 SPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTG 461
SPAG GA AP EGA A P P GRAR G
Sbjct: 66 SPAGAAGAGPAAPAEGA---PGAAPEPPPAGRARPGG 99
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 49.3 bits (116), Expect = 8e-06
Identities = 96/364 (26%), Positives = 132/364 (36%), Gaps = 63/364 (17%)
Query: 117 GLQRRVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQHVGLGR--GGAGQALAQVER 174
GLQ V P G + ++ GP G++ GLQ G+ A VG GG G+ + E
Sbjct: 996 GLQGDVGP-PGEMGME--GPPGTEGES-GLQ--GEPGAKGDVGTAGSVGGTGEPGLRGEP 1049
Query: 175 GAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARH 234
GA G E LQ G +G G GL G++ + G P LGR+
Sbjct: 1050 GAPGE-EGLQGKDGLKGVP----------GGRGLPGEDGEKGEMGLPGIIGP--LGRSGQ 1096
Query: 235 GGLPAPQHAVAVEQQRVHVGQQ----RLCPLG--AQPHAAGVVATGLRRRHRRPPAAAAR 288
GLP P+ V + QR G++ ++ P G G + + R A
Sbjct: 1097 TGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIGKSGPKGARGTRGAVGH 1156
Query: 289 RPLLAAARRGALPA-------PGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIG-EA 340
L+ +P PG P P+ + + PP G P+G +
Sbjct: 1157 LGLMGPDGEPGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTVLGPPGPRGEPGPVGDQG 1216
Query: 341 RRGE------RGDHWLPAL----------GRPGDWLAGLQPAFGVKRSL-RKCARGESSA 383
RGE +G +P L G PGD G Q G + S K +G
Sbjct: 1217 ERGEPGAEGYKGHVGVPGLRGATGQQGPPGEPGD--QGEQGLKGERGSEGNKGKKGAPGP 1274
Query: 384 GARPLFPGCRGPLTHWKRVVSLGDEALHGV--TRARPAVHWPVSPAGMGGALAGAPREG- 440
+P PG +G L G + HG P P G+ G G R G
Sbjct: 1275 SGKPGIPGLQGLLG------PKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGL 1328
Query: 441 AGAP 444
AGAP
Sbjct: 1329 AGAP 1332
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 46.2 bits (108), Expect = 7e-05
Identities = 99/410 (24%), Positives = 129/410 (31%), Gaps = 57/410 (13%)
Query: 112 HRAHVGLQR------------RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQ-GWAAQHV 158
HR H GL+ P A+ LGP G+ L +G G H
Sbjct: 301 HRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHG 360
Query: 159 GLGRGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLG--------VGSAGLAA 210
G+ G L ++ AGP GA + PQ VGS GL
Sbjct: 361 MPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPG 420
Query: 211 VVGDEAQALAAGSQRPQGL----GRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPH 266
+G + A G G G A G P PQ + + R G + +
Sbjct: 421 AIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAG 480
Query: 267 AAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANP-- 324
G + PP +R G PG + P P R P
Sbjct: 481 PKGEPGPHGIQGPIGPPGEEGKR--------GPRGDPGTVGPPGPVGERGAPGNRGFPGS 532
Query: 325 ---PPPPAGCGSSAPIGEAR-RGERGDHWLPALGRPG-DWLAGLQPAFGVKRSLRKC--- 376
P P G P+G + +G +GD P G PG GL GV+ K
Sbjct: 533 DGLPGPKGAQGERGPVGSSGPKGSQGDPGRP--GEPGLPGARGLTGNPGVQGPEGKLGPL 590
Query: 377 -ARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAG 435
A GE P G RG + S+G G + P AG+ G
Sbjct: 591 GAPGEDGRPGPPGSIGIRG------QPGSMGLPGPKG-SSGDPGKPGEAGNAGVPGQRGA 643
Query: 436 APREGAGAPSSAVPVPLCRGRARDTGPPRGS----LTGQSREPARGSFPG 481
++G PS V P G + GPP + L G P G PG
Sbjct: 644 PGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPG 693
Score = 39.3 bits (90), Expect = 0.009
Identities = 103/416 (24%), Positives = 134/416 (32%), Gaps = 110/416 (26%)
Query: 149 RGQGWAAQHVGLG--RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSA 206
RG+ VG +G GQ + E G G+ D GP+G A + P G
Sbjct: 836 RGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDA-GSPGPQGLAGSPGPH----GPN 890
Query: 207 GLAAVVGDEAQALAAGSQRPQGL----GRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLG 262
G+ + G G+Q P G G A G P P A G++ L
Sbjct: 891 GVPGLKGGR------GTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLR 944
Query: 263 AQPHAAGVVATGLRRRHRRPPAAAARR----------------PLLAAARRGALPAPG-- 304
P + G V R PP + P +RG + PG
Sbjct: 945 GDPGSHGRVGD---RGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQR 1001
Query: 305 ------ALIGPA--PRARRPLACTFANPPPPPAGC-GSSAPIGE---------------- 339
L GPA P P T PP P G GS+ P+GE
Sbjct: 1002 GERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRD 1061
Query: 340 ---ARRGERGDHW---LPA----------LGRPGDWLAGLQPAFGVKRSLRKCARGESSA 383
RG+RGD LP +G PGD AG + G + + R A
Sbjct: 1062 GAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGD--AGQRGDPGSRGPIGPPGR----A 1115
Query: 384 GARPLFPGCRGPL----THWKRVVSLGDEALHGVT--------------RARPAVHWPVS 425
G R L PG +GP H R G + G T + + P
Sbjct: 1116 GKRGL-PGPQGPRGDKGDHGDRG-DRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFG 1173
Query: 426 PAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFPG 481
P G G + + +EG P + P RG + GP G EP PG
Sbjct: 1174 PRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGP-----EGPPGEPGPPGPPG 1224
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 45.4 bits (106), Expect = 1e-04
Identities = 67/257 (26%), Positives = 90/257 (35%), Gaps = 43/257 (16%)
Query: 93 VAQGLGELHVAEVRVK------AHHHRAHVGLQRRVQPVAGTLALQWLGPHAHAGDAHGL 146
+A+GLG A RV H RAH+ + + G A Q
Sbjct: 350 LAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQ-------------- 395
Query: 147 QLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQ-APQLLGVGS 205
+R +GW A+ GRG G+ G +D P AA A+ A Q G
Sbjct: 396 -MRREGWGARAKLGGRGVCGKC-------GPGPWDDPARRRNPGAAARAKLAGQRAGRAR 447
Query: 206 AGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQP 265
A + VG + G+ R GR G+ P+ G + P ++
Sbjct: 448 ARTGSQVGSRGRGWGPGAGRVPSGGRR---GVGNPERW----------GGEAAAPRPSRV 494
Query: 266 HAAGVVATGLRRRHRRPPAAAARRPLLAA-ARRGALPAPGALIGPAPRARRPLACTFANP 324
+ A R RR P AAA+R L +G P AL GP PR P
Sbjct: 495 LLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGP 554
Query: 325 PPPPAGCGSSAPIGEAR 341
P PP A + AR
Sbjct: 555 PTPPPARALPAAVASAR 571
Score = 42.4 bits (98), Expect = 0.001
Identities = 106/427 (24%), Positives = 142/427 (33%), Gaps = 64/427 (14%)
Query: 65 RTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQRRVQP 124
R + A V + + ++ G AG L+ A + VAEV HR VGL+
Sbjct: 171 RHGEPARVAEGQDLLEAGGRH-GAGQLEGALAVAAEQVAEVEAAGGQHRP-VGLEGLALD 228
Query: 125 VAGTLALQ-------WLGPHA--HAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERG 175
G +A++ H GD LR G AA +G RG A L +
Sbjct: 229 HDGHIAVEAQQALLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLGSQRGAALAGLIYLPSA 288
Query: 176 AV--GRAEDLQ-AGAGPRGAAEAQAPQLL---------GVGSAGLAAVVGDEAQALAAGS 223
A GR L+ AG PR A + G G+ + DE+
Sbjct: 289 AAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQ 348
Query: 224 QRPQGLGRARHGGLPAPQHAVAVE-QQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRP 282
+GLG + G + AV +R H+ ++ G G A +RR
Sbjct: 349 SLAEGLGVSPQAGARVGEAREAVTTHERAHLDRE-----GEARARLGQAAAQMRREGWGA 403
Query: 283 PAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARR 342
A R + G P P AR LA A G ++
Sbjct: 404 RAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTG---------SQV 454
Query: 343 GERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCAR-GESSAGARPLFPGCRGPLTHWKR 401
G RG W P GR G +R + R G +A RP R
Sbjct: 455 GSRGRGWGPGAGRVPS---------GGRRGVGNPERWGGEAAAPRP------------SR 493
Query: 402 VVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTG 461
V+ L V AR P A L G +G GAP SA+P P R + G
Sbjct: 494 VLL---PELPAVDPARDTRREP-DAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPG 549
Query: 462 PPRGSLT 468
P G T
Sbjct: 550 EPPGPPT 556
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 45.4 bits (106), Expect = 1e-04
Identities = 67/257 (26%), Positives = 90/257 (35%), Gaps = 43/257 (16%)
Query: 93 VAQGLGELHVAEVRVK------AHHHRAHVGLQRRVQPVAGTLALQWLGPHAHAGDAHGL 146
+A+GLG A RV H RAH+ + + G A Q
Sbjct: 350 LAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQ-------------- 395
Query: 147 QLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQ-APQLLGVGS 205
+R +GW A+ GRG G+ G +D P AA A+ A Q G
Sbjct: 396 -MRREGWGARAKLGGRGVCGKC-------GPGPWDDPARRRNPGAAARAKLAGQRAGRAR 447
Query: 206 AGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQP 265
A + VG + G+ R GR G+ P+ G + P ++
Sbjct: 448 ARTGSQVGSRGRGWGPGAGRVPSGGRR---GVGNPERW----------GGEAAAPRPSRV 494
Query: 266 HAAGVVATGLRRRHRRPPAAAARRPLLAA-ARRGALPAPGALIGPAPRARRPLACTFANP 324
+ A R RR P AAA+R L +G P AL GP PR P
Sbjct: 495 LLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGP 554
Query: 325 PPPPAGCGSSAPIGEAR 341
P PP A + AR
Sbjct: 555 PTPPPARALPAAVASAR 571
Score = 42.4 bits (98), Expect = 0.001
Identities = 106/427 (24%), Positives = 142/427 (33%), Gaps = 64/427 (14%)
Query: 65 RTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQRRVQP 124
R + A V + + ++ G AG L+ A + VAEV HR VGL+
Sbjct: 171 RHGEPARVAEGQDLLEAGGRH-GAGQLEGALAVAAEQVAEVEAAGGQHRP-VGLEGLALD 228
Query: 125 VAGTLALQ-------WLGPHA--HAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERG 175
G +A++ H GD LR G AA +G RG A L +
Sbjct: 229 HDGHIAVEAQQALLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLGSQRGAALAGLIYLPSA 288
Query: 176 AV--GRAEDLQ-AGAGPRGAAEAQAPQLL---------GVGSAGLAAVVGDEAQALAAGS 223
A GR L+ AG PR A + G G+ + DE+
Sbjct: 289 AAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQ 348
Query: 224 QRPQGLGRARHGGLPAPQHAVAVE-QQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRP 282
+GLG + G + AV +R H+ ++ G G A +RR
Sbjct: 349 SLAEGLGVSPQAGARVGEAREAVTTHERAHLDRE-----GEARARLGQAAAQMRREGWGA 403
Query: 283 PAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARR 342
A R + G P P AR LA A G ++
Sbjct: 404 RAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTG---------SQV 454
Query: 343 GERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCAR-GESSAGARPLFPGCRGPLTHWKR 401
G RG W P GR G +R + R G +A RP R
Sbjct: 455 GSRGRGWGPGAGRVPS---------GGRRGVGNPERWGGEAAAPRP------------SR 493
Query: 402 VVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTG 461
V+ L V AR P A L G +G GAP SA+P P R + G
Sbjct: 494 VLL---PELPAVDPARDTRREP-DAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPG 549
Query: 462 PPRGSLT 468
P G T
Sbjct: 550 EPPGPPT 556
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 45.4 bits (106), Expect = 1e-04
Identities = 65/232 (28%), Positives = 88/232 (37%), Gaps = 33/232 (14%)
Query: 235 GGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRR--HRRPPAA----AAR 288
G P P+ E +R + +G +P A + + RP AA AA
Sbjct: 455 GPAPEPEREAETEPERGAGTEPER--IGTEPSTAPAPSPPAPKSCLKHRPAAASEGPAAS 512
Query: 289 RPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDH 348
PL AA P PG+L A RP A PPAG +AP R+ ERG
Sbjct: 513 PPLAAAESPPVEPGPGSLDAEAAAPERPKA---ERAEAPPAGAERAAP---ERKAERGGA 566
Query: 349 WLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGD- 407
L + +P GV R L E ++G PL GP+ W+ +L D
Sbjct: 567 ELRGAKKFSVSSCRARPRPGVSRPL------ERASGRLPL--ARSGPV--WRSEAALDDL 616
Query: 408 EALHGVTRARP-----AVHWPVSPAGMGGALAG---APREGAGAPSSAVPVP 451
+ L A+P A P + AG +P+E A AP + P P
Sbjct: 617 QGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCP 668
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 44.7 bits (104), Expect = 2e-04
Identities = 97/373 (26%), Positives = 116/373 (31%), Gaps = 68/373 (18%)
Query: 150 GQGWAAQHVGLGRGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLG-----VG 204
G +AAQ G AG A V +G +G GP G A A PQ G
Sbjct: 176 GGNFAAQMAGGFDEKAGGAQLGVMQGPMGP----MGPRGPPGPAGAPGPQGFQGNPGEPG 231
Query: 205 SAGLAAVVGDEAQALAAGSQRPQGL----GRARHGGLPAPQHA------VAVEQQRVHVG 254
G++ +G G G G+A G P PQ A + + H G
Sbjct: 232 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 291
Query: 255 QQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARR----------PLLAAARRG--ALPA 302
L + A GV P R P AA RG P
Sbjct: 292 YPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 351
Query: 303 PGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIG----EARRGERGDHWLPALGRPGD 358
P GP A P P P G + P G E +G RG+ P G PG
Sbjct: 352 PAGPPGPVGPAGGP------GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP--GSPGP 403
Query: 359 WLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVT---- 414
A P + A AGA P FPG RGP LG + G
Sbjct: 404 AGASGNPGTDGIPGAKGSAGAPGIAGA-PGFPGPRGPPGPQGATGPLGPKGQTGEPGIAG 462
Query: 415 -RARPAVHWPVSPAGMGGALAGAPREG----AGAPSSAVPVPLCRGRARDTGPPRGSLTG 469
+ PAG GA A EG G P P+ GPP G
Sbjct: 463 FKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI----------GPP-----G 507
Query: 470 QSREPARGSFPGR 482
+ P FPG+
Sbjct: 508 ERGAPGNRGFPGQ 520
Score = 44.7 bits (104), Expect = 2e-04
Identities = 92/326 (28%), Positives = 109/326 (33%), Gaps = 83/326 (25%)
Query: 163 GGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQ-APQLLGV----GSAGLAAVVGDEAQ 217
G G A A E+G VG GP G+A A+ AP G G AG A G + Q
Sbjct: 792 GPPGPAGANGEKGEVGPP-------GPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQ 844
Query: 218 ALAAGSQRPQGLGRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRR 277
A G Q G + G P PQ P GA TG
Sbjct: 845 PGAKGEQGEAG--QKGDAGAPGPQG-----------------PSGAPGPQGPTGVTG--- 882
Query: 278 RHRRPPAAAARRPLLAAARRGALPAPGA--LIGPAPRARRPLACTFANPPPPPAGCGSSA 335
P A RGA PGA G A R P + PP PP G
Sbjct: 883 -----PKGA----------RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG 927
Query: 336 PIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGP 395
P +G RGD P GR G+ GLQ G K G+ PG +G
Sbjct: 928 P-----KGARGDSGPP--GRAGE--PGLQGPAGPPG--EKGEPGDDGPSGAEGPPGPQG- 975
Query: 396 LTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRG 455
G + G+ R +P G+ G ++GA S RG
Sbjct: 976 --------LAGQRGIVGLPGQRGERGFP----GLPGPSGEPGKQGAPGASGD------RG 1017
Query: 456 RARDTGPPRGSLTGQSREPARGSFPG 481
GPP LTG + EP R PG
Sbjct: 1018 PPGPVGPP--GLTGPAGEPGREGSPG 1041
Score = 36.6 bits (83), Expect = 0.056
Identities = 92/353 (26%), Positives = 111/353 (31%), Gaps = 58/353 (16%)
Query: 163 GGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGV----GSAGLAAVVGDEAQA 218
G AG A ERG G A A P E P G+ G AG VG
Sbjct: 522 GLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAP 581
Query: 219 LAAGSQRPQGLGRARHG----GLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATG 274
G P G AR G P P+ A + G++ L P A G+ G
Sbjct: 582 GEDGRPGPPGPQGARGQPGVMGFPGPKGA---NGEPGKAGEKGL------PGAPGL--RG 630
Query: 275 LRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSS 334
L + AA P A RG APG P + L PP PP G
Sbjct: 631 LPGKDGETGAAGPPGPAGPAGERGEQGAPG------PSGFQGLP----GPPGPPGEGGKP 680
Query: 335 APIGEARR-------GERGDHWLPA-LGRPGDWLAGLQPAFGVKRSLRKCARGESSAGAR 386
G G RG+ P G PG GLQ G+ + +S A
Sbjct: 681 GDQGVPGEAGAPGLVGPRGERGFPGERGSPG--AQGLQGPRGLPGTPGTDGPKGASGPAG 738
Query: 387 PL----------FPGCRG------PLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMG 430
P PG RG P V G E G R + P+ P G
Sbjct: 739 PPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGR-GLTGPIGPPGPA 797
Query: 431 GALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFPGRR 483
GA G P+ + G +TGPP G + P PG +
Sbjct: 798 GANGEKGEVGPPGPAGSAGARGAPGERGETGPP--GPAGFAGPPGADGQPGAK 848
Score = 34.7 bits (78), Expect = 0.21
Identities = 80/300 (26%), Positives = 107/300 (35%), Gaps = 53/300 (17%)
Query: 188 GPRGA-------AEAQAPQLLG-VGSAGLAAVVGDEAQALAAGSQRPQGL-GRARHGGLP 238
GP+GA A P L G G G GD+ + A G PQGL G+ GLP
Sbjct: 927 GPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLP 986
Query: 239 APQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLA-AARR 297
QR G L +P G R PP L A
Sbjct: 987 G---------QRGERGFPGLPGPSGEPGKQGAPGAS---GDRGPPGPVGPPGLTGPAGEP 1034
Query: 298 GALPAPGALIGPAPR---------ARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDH 348
G +PGA GP R A P PP G + P G ++G+RG+
Sbjct: 1035 GREGSPGA-DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTG--KQGDRGE- 1090
Query: 349 WLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGP--LTHWKRVVS-- 404
A G G +G A G++ + RG+ P G +G T + +
Sbjct: 1091 -AGAQGPMGP--SGPAGARGIQGP--QGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPP 1145
Query: 405 --LGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGP 462
GD+ G PA P P G G + + ++GA + P RGR+ +TGP
Sbjct: 1146 GPSGDQGASG-----PA--GPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGP 1198
Score = 33.1 bits (74), Expect = 0.62
Identities = 84/343 (24%), Positives = 109/343 (31%), Gaps = 59/343 (17%)
Query: 174 RGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGL-GRA 232
+G G D++ GP+G Q P G G GD+ + A G + G G
Sbjct: 103 KGQKGEPGDIKDIVGPKGPPGPQGP----AGEQGPRGDRGDKGEKGAPGPRGRDGEPGTP 158
Query: 233 RHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLL 292
+ G P P P G + A +A G + + P+
Sbjct: 159 GNPGPPGPPGPPG--------------PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMG 204
Query: 293 AAARRGALPAPGALIGPA-----------PRARRPLACTFANPPPPPAGCGSSAPIGE-A 340
RG P P GP P P+ PP PP G G+
Sbjct: 205 PMGPRGP-PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR--GPPGPPGKPGDDGEAGKPG 261
Query: 341 RRGERGDHW------------LPAL----GRPG-DWLAGLQPAFGVKRSLRKCARGESSA 383
+ GERG LP + G PG D G A GVK S
Sbjct: 262 KAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG 321
Query: 384 GARPL-FPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAP-REGA 441
P PG RG + G++ G A P PV PAG G GAP +G
Sbjct: 322 PMGPRGLPGERGRTGPAGAAGARGNDGQPGP--AGPP--GPVGPAG-GPGFPGAPGAKGE 376
Query: 442 GAPSSAVPVPLCRGRARDTGPPRG-SLTGQSREPARGSFPGRR 483
P+ A +G + G P G S P PG +
Sbjct: 377 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 419
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 44.7 bits (104), Expect = 2e-04
Identities = 97/373 (26%), Positives = 116/373 (31%), Gaps = 68/373 (18%)
Query: 150 GQGWAAQHVGLGRGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLG-----VG 204
G +AAQ G AG A V +G +G GP G A A PQ G
Sbjct: 107 GGNFAAQMAGGFDEKAGGAQLGVMQGPMGP----MGPRGPPGPAGAPGPQGFQGNPGEPG 162
Query: 205 SAGLAAVVGDEAQALAAGSQRPQGL----GRARHGGLPAPQHA------VAVEQQRVHVG 254
G++ +G G G G+A G P PQ A + + H G
Sbjct: 163 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 222
Query: 255 QQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARR----------PLLAAARRG--ALPA 302
L + A GV P R P AA RG P
Sbjct: 223 YPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 282
Query: 303 PGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIG----EARRGERGDHWLPALGRPGD 358
P GP A P P P G + P G E +G RG+ P G PG
Sbjct: 283 PAGPPGPVGPAGGP------GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP--GSPGP 334
Query: 359 WLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVT---- 414
A P + A AGA P FPG RGP LG + G
Sbjct: 335 AGASGNPGTDGIPGAKGSAGAPGIAGA-PGFPGPRGPPGPQGATGPLGPKGQTGEPGIAG 393
Query: 415 -RARPAVHWPVSPAGMGGALAGAPREG----AGAPSSAVPVPLCRGRARDTGPPRGSLTG 469
+ PAG GA A EG G P P+ GPP G
Sbjct: 394 FKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI----------GPP-----G 438
Query: 470 QSREPARGSFPGR 482
+ P FPG+
Sbjct: 439 ERGAPGNRGFPGQ 451
Score = 44.7 bits (104), Expect = 2e-04
Identities = 92/326 (28%), Positives = 109/326 (33%), Gaps = 83/326 (25%)
Query: 163 GGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQ-APQLLGV----GSAGLAAVVGDEAQ 217
G G A A E+G VG GP G+A A+ AP G G AG A G + Q
Sbjct: 723 GPPGPAGANGEKGEVGPP-------GPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQ 775
Query: 218 ALAAGSQRPQGLGRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRR 277
A G Q G + G P PQ P GA TG
Sbjct: 776 PGAKGEQGEAG--QKGDAGAPGPQG-----------------PSGAPGPQGPTGVTG--- 813
Query: 278 RHRRPPAAAARRPLLAAARRGALPAPGA--LIGPAPRARRPLACTFANPPPPPAGCGSSA 335
P A RGA PGA G A R P + PP PP G
Sbjct: 814 -----PKGA----------RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG 858
Query: 336 PIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGP 395
P +G RGD P GR G+ GLQ G K G+ PG +G
Sbjct: 859 P-----KGARGDSGPP--GRAGE--PGLQGPAGPPG--EKGEPGDDGPSGAEGPPGPQG- 906
Query: 396 LTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRG 455
G + G+ R +P G+ G ++GA S RG
Sbjct: 907 --------LAGQRGIVGLPGQRGERGFP----GLPGPSGEPGKQGAPGASGD------RG 948
Query: 456 RARDTGPPRGSLTGQSREPARGSFPG 481
GPP LTG + EP R PG
Sbjct: 949 PPGPVGPP--GLTGPAGEPGREGSPG 972
Score = 36.6 bits (83), Expect = 0.056
Identities = 92/353 (26%), Positives = 111/353 (31%), Gaps = 58/353 (16%)
Query: 163 GGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGV----GSAGLAAVVGDEAQA 218
G AG A ERG G A A P E P G+ G AG VG
Sbjct: 453 GLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAP 512
Query: 219 LAAGSQRPQGLGRARHG----GLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATG 274
G P G AR G P P+ A + G++ L P A G+ G
Sbjct: 513 GEDGRPGPPGPQGARGQPGVMGFPGPKGA---NGEPGKAGEKGL------PGAPGL--RG 561
Query: 275 LRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSS 334
L + AA P A RG APG P + L PP PP G
Sbjct: 562 LPGKDGETGAAGPPGPAGPAGERGEQGAPG------PSGFQGLP----GPPGPPGEGGKP 611
Query: 335 APIGEARR-------GERGDHWLPA-LGRPGDWLAGLQPAFGVKRSLRKCARGESSAGAR 386
G G RG+ P G PG GLQ G+ + +S A
Sbjct: 612 GDQGVPGEAGAPGLVGPRGERGFPGERGSPG--AQGLQGPRGLPGTPGTDGPKGASGPAG 669
Query: 387 PL----------FPGCRG------PLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMG 430
P PG RG P V G E G R + P+ P G
Sbjct: 670 PPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGR-GLTGPIGPPGPA 728
Query: 431 GALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFPGRR 483
GA G P+ + G +TGPP G + P PG +
Sbjct: 729 GANGEKGEVGPPGPAGSAGARGAPGERGETGPP--GPAGFAGPPGADGQPGAK 779
Score = 34.7 bits (78), Expect = 0.21
Identities = 80/300 (26%), Positives = 107/300 (35%), Gaps = 53/300 (17%)
Query: 188 GPRGA-------AEAQAPQLLG-VGSAGLAAVVGDEAQALAAGSQRPQGL-GRARHGGLP 238
GP+GA A P L G G G GD+ + A G PQGL G+ GLP
Sbjct: 858 GPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLP 917
Query: 239 APQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLA-AARR 297
QR G L +P G R PP L A
Sbjct: 918 G---------QRGERGFPGLPGPSGEPGKQGAPGAS---GDRGPPGPVGPPGLTGPAGEP 965
Query: 298 GALPAPGALIGPAPR---------ARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDH 348
G +PGA GP R A P PP G + P G ++G+RG+
Sbjct: 966 GREGSPGA-DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTG--KQGDRGE- 1021
Query: 349 WLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGP--LTHWKRVVS-- 404
A G G +G A G++ + RG+ P G +G T + +
Sbjct: 1022 -AGAQGPMGP--SGPAGARGIQGP--QGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPP 1076
Query: 405 --LGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGP 462
GD+ G PA P P G G + + ++GA + P RGR+ +TGP
Sbjct: 1077 GPSGDQGASG-----PA--GPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGP 1129
Score = 33.1 bits (74), Expect = 0.62
Identities = 84/343 (24%), Positives = 109/343 (31%), Gaps = 59/343 (17%)
Query: 174 RGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGL-GRA 232
+G G D++ GP+G Q P G G GD+ + A G + G G
Sbjct: 34 KGQKGEPGDIKDIVGPKGPPGPQGP----AGEQGPRGDRGDKGEKGAPGPRGRDGEPGTP 89
Query: 233 RHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLL 292
+ G P P P G + A +A G + + P+
Sbjct: 90 GNPGPPGPPGPPG--------------PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMG 135
Query: 293 AAARRGALPAPGALIGPA-----------PRARRPLACTFANPPPPPAGCGSSAPIGE-A 340
RG P P GP P P+ PP PP G G+
Sbjct: 136 PMGPRGP-PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR--GPPGPPGKPGDDGEAGKPG 192
Query: 341 RRGERGDHW------------LPAL----GRPG-DWLAGLQPAFGVKRSLRKCARGESSA 383
+ GERG LP + G PG D G A GVK S
Sbjct: 193 KAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG 252
Query: 384 GARPL-FPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAP-REGA 441
P PG RG + G++ G A P PV PAG G GAP +G
Sbjct: 253 PMGPRGLPGERGRTGPAGAAGARGNDGQPGP--AGPP--GPVGPAG-GPGFPGAPGAKGE 307
Query: 442 GAPSSAVPVPLCRGRARDTGPPRG-SLTGQSREPARGSFPGRR 483
P+ A +G + G P G S P PG +
Sbjct: 308 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 350
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 43.5 bits (101), Expect = 5e-04
Identities = 93/334 (27%), Positives = 115/334 (34%), Gaps = 59/334 (17%)
Query: 135 GPHAHAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRAEDLQAGAGPRGAAE 194
GP AG G RG+ A G G G E+G+ G GP GA
Sbjct: 896 GPPGPAGKEGGKGPRGETGPAGRPG-EVGPPGPPGPAGEKGSPG-------ADGPAGAPG 947
Query: 195 AQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGL-GRARHGGLPAPQHAVAVEQQRVHV 253
PQ G AG VVG Q G + GL G + G P A +
Sbjct: 948 TPGPQ----GIAGQRGVVGLPGQR---GERGFPGLPGPSGEPGKQGPSGASGERGPPGPM 1000
Query: 254 GQQRLC-PLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGAL--IGPA 310
G L P G A G R P A R A GA APGA +GPA
Sbjct: 1001 GPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPA 1060
Query: 311 PRARRPLACTFANPPPPPAGCGSSAPIG-EARRGERGDHWLPALGRPGDWLAGLQPAFGV 369
++ A P P G+ P G + RG++G+ G GD G+
Sbjct: 1061 GKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGE-----TGEQGDR--------GI 1107
Query: 370 KRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGM 429
K RG S P PG S G++ G + P P G
Sbjct: 1108 KGH-----RGFSGLQGPPGPPG------------SPGEQGPSGASG-------PAGPRGP 1143
Query: 430 GGALAGAP-REGAGAPSSAVPVPLCRGRARDTGP 462
G+ AGAP ++G + P RGR D GP
Sbjct: 1144 PGS-AGAPGKDGLNGLPGPIGPPGPRGRTGDAGP 1176
Score = 42.7 bits (99), Expect = 8e-04
Identities = 87/335 (25%), Positives = 114/335 (34%), Gaps = 57/335 (17%)
Query: 173 ERGAVGRA--EDLQAGAGPRGAAEAQAPQ----LLG-VGSAGLAAVVGDEAQALAAGSQR 225
ERGA G + + AGP+GA + L G +G G A GD+ ++ +G
Sbjct: 732 ERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAG 791
Query: 226 PQGL-GRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLGA--QPHAAGVVATGLRRRHRRP 282
P G G G P P P GA QP A G + P
Sbjct: 792 PTGARGAPGDRGEPGPPGPAGFAG-----------PPGADGQPGAKGEPGDAGAKGDAGP 840
Query: 283 PAAAARR----PLL------AAARRGALPAPGA--LIGPAPRARRPLACTFANPPPPPAG 330
P A P+ A RG+ PGA G A R P A PP PP
Sbjct: 841 PGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGP 900
Query: 331 CGSSAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFP 390
G G+ RGE G PA GRPG+ + P + K + G P P
Sbjct: 901 AGKEG--GKGPRGETG----PA-GRPGE----VGPPGPPGPAGEKGSPGADGPAGAPGTP 949
Query: 391 GCRGPLTHWKRVVSLGDEALHGVTRARPAVHWP--VSPAGMGGALAGAPREGAGAPSSAV 448
G +G G + G+ R +P P+G G + G P +
Sbjct: 950 GPQG---------IAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPM 1000
Query: 449 PVPLCRGRARDTGPPRGSLTGQSREPARGSFPGRR 483
P G ++G R G P R PG +
Sbjct: 1001 GPPGLAGPPGESG--REGAPGAEGSPGRDGSPGAK 1033
Score = 40.4 bits (93), Expect = 0.004
Identities = 85/343 (24%), Positives = 111/343 (32%), Gaps = 57/343 (16%)
Query: 162 RGGAGQALAQVERGAVGRAEDLQAGAGPRGA-AEAQAPQLLGV-GSAGLAAVVGDEAQAL 219
+G G+A E G G A+ L G G + P G G G G QA
Sbjct: 520 KGSPGEAGRPGEAGLPG-AKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAG 578
Query: 220 AAGSQRPQGL----GRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGL 275
G P+G G+A G+P P AV + G Q P AG
Sbjct: 579 VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQ------GPPGPAGPAG--- 629
Query: 276 RRRHRRPPAAAA--------RRPLLAAARRGALPAPGALIGPAPRARR-----PLACTFA 322
R + PA + P A + G PG L P P R P
Sbjct: 630 -ERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ 688
Query: 323 NPPPPPAGCGSS-APIGEARRGERGDHWLP-ALGRPGDWLAGLQPAFGVKRSLRKCARGE 380
PP P G++ AP + +G+ G P + G PG L G+ GE
Sbjct: 689 GPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPG--LQGMP--------------GE 732
Query: 381 SSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREG 440
A P G RG S G + + G+T P+ P G GA G
Sbjct: 733 RGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTG-------PIGPPGPAGAPGDKGESG 785
Query: 441 AGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFPGRR 483
P+ G + GPP G + P PG +
Sbjct: 786 PSGPAGPTGARGAPGDRGEPGPP--GPAGFAGPPGADGQPGAK 826
Score = 38.9 bits (89), Expect = 0.011
Identities = 54/178 (30%), Positives = 59/178 (33%), Gaps = 22/178 (12%)
Query: 301 PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEA----RRGERGDHW-LPALGR 355
P P GP P A P PP G + GEA R GERG A G
Sbjct: 196 PGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGL 255
Query: 356 PGDWLAGLQPAFGVKRSLRKCARGESSAG-----ARPLFPGCRGPLTHWKRVVSLGDEAL 410
PG AGL P R + AG P PG G +G L
Sbjct: 256 PG--TAGL-PGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENG------APGQMGPRGL 306
Query: 411 HGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGP--PRGS 466
G R RP P G GA A G P+ P G + GP PRGS
Sbjct: 307 PG-ERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGS 363
Score = 34.7 bits (78), Expect = 0.21
Identities = 100/361 (27%), Positives = 116/361 (32%), Gaps = 74/361 (20%)
Query: 135 GPHAHAGDAHGLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRA-EDLQAGA------ 187
GP G A + G AA G AG+ GAVG A +D +AGA
Sbjct: 569 GPPGARGQAGVMGFPGPKGAAGEPGK----AGERGVPGPPGAVGPAGKDGEAGAQGPPGP 624
Query: 188 -GPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAPQHAVAV 246
GP G Q P GS G + G AG QG+ G L AP + A
Sbjct: 625 AGPAGERGEQGP----AGSPGFQGLPGPAGPPGEAGKPGEQGVP----GDLGAPGPSGA- 675
Query: 247 EQQRVHVGQQRLC-------PLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGA 299
+R G++ + P GA A G P + A RGA
Sbjct: 676 RGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGA 735
Query: 300 LPAPGAL-----IGP-----APRARRPLACTFANPPPPPAGC----GSSAPIGEA----R 341
PG GP +P T PP PAG G S P G A
Sbjct: 736 AGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGA 795
Query: 342 RGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKR 401
RG GD P G PG AG G A G+ A P G +G
Sbjct: 796 RGAPGDRGEP--GPPGP--AGFAGPPG--------ADGQPGAKGEPGDAGAKG------- 836
Query: 402 VVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTG 461
D G A PA P P G GA G+ P A P GR G
Sbjct: 837 -----DAGPPGP--AGPA--GPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPG 887
Query: 462 P 462
P
Sbjct: 888 P 888
Score = 31.6 bits (70), Expect = 1.8
Identities = 52/185 (28%), Positives = 61/185 (32%), Gaps = 29/185 (15%)
Query: 163 GGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQ-APQLLG----------VGSAGLAAV 211
G G A+ +RG G A GP GA A AP +G G AG A
Sbjct: 1025 GRDGSPGAKGDRGETGPA-------GPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGP 1077
Query: 212 VGDEAQALAAGSQRPQGLGRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVV 271
VG AG Q P+G G Q ++ R G Q P G
Sbjct: 1078 VGPVGARGPAGPQGPRG-----DKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPS 1132
Query: 272 ATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGC 331
R PP +A A + G PG + P PR R A PP PP
Sbjct: 1133 GASGPAGPRGPPGSAG-----APGKDGLNGLPGPIGPPGPRGRTGDAGP-VGPPGPPGPP 1186
Query: 332 GSSAP 336
G P
Sbjct: 1187 GPPGP 1191
Score = 31.2 bits (69), Expect = 2.4
Identities = 62/235 (26%), Positives = 74/235 (31%), Gaps = 60/235 (25%)
Query: 294 AARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIG-------EARRGERG 346
A RG A GA P P A PP P G+ G E +G RG
Sbjct: 319 AGARGNDGATGAAGPPGPTGP-------AGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRG 371
Query: 347 DHWLP----ALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRV 402
+ P A G G+ A QP K A G P FPG RGP
Sbjct: 372 EPGPPGPAGAAGPAGNPGADGQPG-------AKGANGAPGIAGAPGFPGARGPSGPQGPG 424
Query: 403 VSLGDEALHGV-----------TRARP---AVHWPVSPAGMGG-----------ALAGAP 437
G + G + P V P PAG G L G P
Sbjct: 425 GPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPP 484
Query: 438 REGAGAPSSAVP----VPLCRGRARDTGP-----PRGSLTGQSREPARGSFPGRR 483
E G S P V +G A + G P+GS G++ P PG +
Sbjct: 485 GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS-PGEAGRPGEAGLPGAK 538
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 43.5 bits (101), Expect = 5e-04
Identities = 61/230 (26%), Positives = 82/230 (35%), Gaps = 30/230 (13%)
Query: 293 AAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAG---CGSSAPIGEARRGERGDHW 349
AAAR A APG L P + RP PP PA G++ +G ER
Sbjct: 12 AAARTPAARAPGLLTPRPPGSPRP------PPPVTPAALRVLGAAGAVGRKPLAER---- 61
Query: 350 LPALGRPGDWLAGLQPAFGVKRSLRKCA--RGESSAGARPLFPG---CRGPLTHWKRVVS 404
A G G + P G R+ R A RGE + A+ PG G + R
Sbjct: 62 --AGGIGGATIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGP 119
Query: 405 LGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRAR----DT 460
LG + L ++ + A AL+ R P+ P P R+R +
Sbjct: 120 LGQKGLR-ISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEV 178
Query: 461 GPPRGSLTGQSREPARG-----SFPGRREYAPQSFAKTRSRFLGGNTNQP 505
G PR + + + R P G S S A R GG +P
Sbjct: 179 GLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRP 228
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 43.5 bits (101), Expect = 5e-04
Identities = 93/362 (25%), Positives = 122/362 (33%), Gaps = 48/362 (13%)
Query: 135 GPHAHAGDAHGLQLRGQGWAAQHVGL-GRGGA-GQALAQVERGAVGRAEDLQAGAGPRGA 192
GP G A RG + +G GR G G A E+G G + GP G
Sbjct: 920 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPI----GPTGR 975
Query: 193 AEAQAPQLLG--VGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAPQHAVAVEQQR 250
Q P L G G+A GD+ + G + +G + HG P V Q
Sbjct: 976 DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKG-NKGEHGPPGPPGPIGPVGQPG 1034
Query: 251 VHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPA 310
G Q H G R + P + + +G G + P
Sbjct: 1035 AAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPG 1094
Query: 311 PRARR-PLACTFANPPP-PPAGCGSSAPIGEARRGERGDHWLPAL-GRPGDWLAGLQPAF 367
P R P A+ P PP G G+ P GE +GE G+ P + G PG + G +
Sbjct: 1095 PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE--KGEPGESGSPGIQGEPG--VKGPRGER 1150
Query: 368 GVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVT-----RARPAVHW 422
G K GES P PG +GP GD+ G P
Sbjct: 1151 GEK--------GESGQPGEPGPPGPKGP---------TGDDGPKGNPGPVGFPGDPGPPG 1193
Query: 423 PVSPAGMGGALAGAPREG-AGAPSSAVPVPLCRGRARDTGP-----PRGSLTGQSREPAR 476
P G GA +G G P S P G GP P GS + R+ +
Sbjct: 1194 EGGPRGQDGAKGDRGEDGEPGQPGSPGPT----GENGPPGPLGKRGPAGSPGSEGRQGGK 1249
Query: 477 GS 478
G+
Sbjct: 1250 GA 1251
Score = 33.5 bits (75), Expect = 0.48
Identities = 89/349 (25%), Positives = 111/349 (31%), Gaps = 71/349 (20%)
Query: 162 RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAA 221
RG +G++ + ERG G + GPRGA + G++G G +
Sbjct: 742 RGLSGKSGPRGERGPTGP----RGQRGPRGATGKSGAK----GTSGGDGPHGPPGERGLP 793
Query: 222 GSQRPQGL-GRARHGGLPAPQHAVAVEQQRVHVG-QQRLCPLG-----AQPHAAGVVATG 274
G Q P G G G P QR VG Q + P G AAG
Sbjct: 794 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPM 853
Query: 275 LRRRHRRPPAAAARRPLLAAARR-------GALPAPGALIGPAPR----ARRPLACTFAN 323
R H PP + L A + G APG GPA R L T
Sbjct: 854 GERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK-DGPAGLRGFPGERGLPGTAGG 912
Query: 324 P----------PPPPAG-------CGSSAPIGEARR-------GERGDHWLPA----LGR 355
P PP PAG GS PIG R G G+ +P +G
Sbjct: 913 PGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 972
Query: 356 PGDWLAGLQPAFGVKRSLRKCA-RGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVT 414
G G+Q G+ GE PG +G + G++ HG
Sbjct: 973 TGR--DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKG---------TKGNKGEHGP- 1020
Query: 415 RARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPP 463
P P+ P G GA GA P G GPP
Sbjct: 1021 ---PGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1066
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 43.5 bits (101), Expect = 5e-04
Identities = 93/362 (25%), Positives = 122/362 (33%), Gaps = 48/362 (13%)
Query: 135 GPHAHAGDAHGLQLRGQGWAAQHVGL-GRGGA-GQALAQVERGAVGRAEDLQAGAGPRGA 192
GP G A RG + +G GR G G A E+G G + GP G
Sbjct: 899 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPI----GPTGR 954
Query: 193 AEAQAPQLLG--VGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAPQHAVAVEQQR 250
Q P L G G+A GD+ + G + +G + HG P V Q
Sbjct: 955 DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKG-NKGEHGPPGPPGPIGPVGQPG 1013
Query: 251 VHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPA 310
G Q H G R + P + + +G G + P
Sbjct: 1014 AAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPG 1073
Query: 311 PRARR-PLACTFANPPP-PPAGCGSSAPIGEARRGERGDHWLPAL-GRPGDWLAGLQPAF 367
P R P A+ P PP G G+ P GE +GE G+ P + G PG + G +
Sbjct: 1074 PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE--KGEPGESGSPGIQGEPG--VKGPRGER 1129
Query: 368 GVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVT-----RARPAVHW 422
G K GES P PG +GP GD+ G P
Sbjct: 1130 GEK--------GESGQPGEPGPPGPKGP---------TGDDGPKGNPGPVGFPGDPGPPG 1172
Query: 423 PVSPAGMGGALAGAPREG-AGAPSSAVPVPLCRGRARDTGP-----PRGSLTGQSREPAR 476
P G GA +G G P S P G GP P GS + R+ +
Sbjct: 1173 EGGPRGQDGAKGDRGEDGEPGQPGSPGPT----GENGPPGPLGKRGPAGSPGSEGRQGGK 1228
Query: 477 GS 478
G+
Sbjct: 1229 GA 1230
Score = 33.5 bits (75), Expect = 0.48
Identities = 89/349 (25%), Positives = 111/349 (31%), Gaps = 71/349 (20%)
Query: 162 RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAA 221
RG +G++ + ERG G + GPRGA + G++G G +
Sbjct: 721 RGLSGKSGPRGERGPTGP----RGQRGPRGATGKSGAK----GTSGGDGPHGPPGERGLP 772
Query: 222 GSQRPQGL-GRARHGGLPAPQHAVAVEQQRVHVG-QQRLCPLG-----AQPHAAGVVATG 274
G Q P G G G P QR VG Q + P G AAG
Sbjct: 773 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPM 832
Query: 275 LRRRHRRPPAAAARRPLLAAARR-------GALPAPGALIGPAPR----ARRPLACTFAN 323
R H PP + L A + G APG GPA R L T
Sbjct: 833 GERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK-DGPAGLRGFPGERGLPGTAGG 891
Query: 324 P----------PPPPAG-------CGSSAPIGEARR-------GERGDHWLPA----LGR 355
P PP PAG GS PIG R G G+ +P +G
Sbjct: 892 PGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 951
Query: 356 PGDWLAGLQPAFGVKRSLRKCA-RGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVT 414
G G+Q G+ GE PG +G + G++ HG
Sbjct: 952 TGR--DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKG---------TKGNKGEHGP- 999
Query: 415 RARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPP 463
P P+ P G GA GA P G GPP
Sbjct: 1000 ---PGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1045
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 43.5 bits (101), Expect = 5e-04
Identities = 93/362 (25%), Positives = 122/362 (33%), Gaps = 48/362 (13%)
Query: 135 GPHAHAGDAHGLQLRGQGWAAQHVGL-GRGGA-GQALAQVERGAVGRAEDLQAGAGPRGA 192
GP G A RG + +G GR G G A E+G G + GP G
Sbjct: 1006 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPI----GPTGR 1061
Query: 193 AEAQAPQLLG--VGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAPQHAVAVEQQR 250
Q P L G G+A GD+ + G + +G + HG P V Q
Sbjct: 1062 DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKG-NKGEHGPPGPPGPIGPVGQPG 1120
Query: 251 VHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPA 310
G Q H G R + P + + +G G + P
Sbjct: 1121 AAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPG 1180
Query: 311 PRARR-PLACTFANPPP-PPAGCGSSAPIGEARRGERGDHWLPAL-GRPGDWLAGLQPAF 367
P R P A+ P PP G G+ P GE +GE G+ P + G PG + G +
Sbjct: 1181 PPGPRGPAGPNGADGPQGPPGGVGNLGPPGE--KGEPGESGSPGIQGEPG--VKGPRGER 1236
Query: 368 GVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVT-----RARPAVHW 422
G K GES P PG +GP GD+ G P
Sbjct: 1237 GEK--------GESGQPGEPGPPGPKGP---------TGDDGPKGNPGPVGFPGDPGPPG 1279
Query: 423 PVSPAGMGGALAGAPREG-AGAPSSAVPVPLCRGRARDTGP-----PRGSLTGQSREPAR 476
P G GA +G G P S P G GP P GS + R+ +
Sbjct: 1280 EGGPRGQDGAKGDRGEDGEPGQPGSPGPT----GENGPPGPLGKRGPAGSPGSEGRQGGK 1335
Query: 477 GS 478
G+
Sbjct: 1336 GA 1337
Score = 33.5 bits (75), Expect = 0.48
Identities = 89/349 (25%), Positives = 111/349 (31%), Gaps = 71/349 (20%)
Query: 162 RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAA 221
RG +G++ + ERG G + GPRGA + G++G G +
Sbjct: 828 RGLSGKSGPRGERGPTGP----RGQRGPRGATGKSGAK----GTSGGDGPHGPPGERGLP 879
Query: 222 GSQRPQGL-GRARHGGLPAPQHAVAVEQQRVHVG-QQRLCPLG-----AQPHAAGVVATG 274
G Q P G G G P QR VG Q + P G AAG
Sbjct: 880 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPM 939
Query: 275 LRRRHRRPPAAAARRPLLAAARR-------GALPAPGALIGPAPR----ARRPLACTFAN 323
R H PP + L A + G APG GPA R L T
Sbjct: 940 GERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK-DGPAGLRGFPGERGLPGTAGG 998
Query: 324 P----------PPPPAG-------CGSSAPIGEARR-------GERGDHWLPA----LGR 355
P PP PAG GS PIG R G G+ +P +G
Sbjct: 999 PGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 1058
Query: 356 PGDWLAGLQPAFGVKRSLRKCA-RGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVT 414
G G+Q G+ GE PG +G + G++ HG
Sbjct: 1059 TGR--DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKG---------TKGNKGEHGP- 1106
Query: 415 RARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPP 463
P P+ P G GA GA P G GPP
Sbjct: 1107 ---PGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1152
>gi|13540521 basic helix-loop-helix domain containing, class B, 3
[Homo sapiens]
Length = 482
Score = 43.5 bits (101), Expect = 5e-04
Identities = 49/166 (29%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
Query: 185 AGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAPQHAV 244
+G GP G A A A LLG A AA++ +A L++ G GG P PQ A
Sbjct: 289 SGGGPGGGAAAAAAALLGPDPAAAAALLRPDAALLSSLVAFGGG------GGAPFPQPAA 342
Query: 245 AVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPG 304
A + L P A + + ++ P AAAA PLL +PAP
Sbjct: 343 AAAP--FCLPFCFLSPSAAAAYVQPFLDKSGLEKYLYPAAAAAPFPLLYP----GIPAPA 396
Query: 305 ALIGPAPRARR-----PLACTFANPPPPPAGCGSS-------APIG 338
A A A P + +PPP AG ++ AP+G
Sbjct: 397 AAAAAAAAAAAAAAAFPCLSSVLSPPPEKAGAAAATLLPHEVAPLG 442
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 43.1 bits (100), Expect = 6e-04
Identities = 64/206 (31%), Positives = 81/206 (39%), Gaps = 36/206 (17%)
Query: 152 GWAAQHVGLGRGGAGQALAQVERGAVGR---------AEDLQAGAGPRGAAEAQAPQLLG 202
GW ++ G GGAGQ + Q RG GR QA A RGAA +A Q G
Sbjct: 491 GWHSEAGGRRDGGAGQ-VVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAG 549
Query: 203 VGSAGLAAVVGDEAQALA----AGSQRPQGLGRARHGGLPAPQHAVAVEQQRVHVGQQRL 258
S L VG + A +R +G G AR G VA Q HV ++++
Sbjct: 550 SASGLLGGAVGARGRRRAHKPVVVGERLRGRG-ARVGTWRRGGGRVAQRGQLAHVLRRQV 608
Query: 259 --CPLGAQPHAAGVVATGLRRRHR--RPPAAAARRPLLAAARRGAL----------PAPG 304
G PH V+ ++ RP AA P+LA G L P PG
Sbjct: 609 EGAAAGLTPHVPPVLGAAPQQPVALIRPDGHAA--PVLAGVLEGVLHQHLHHRRREPEPG 666
Query: 305 ALIGPAPRARRPLACTFANPPPPPAG 330
P+P P C+ A PPP G
Sbjct: 667 P---PSPARTAP--CSPALTPPPEKG 687
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 43.1 bits (100), Expect = 6e-04
Identities = 122/482 (25%), Positives = 153/482 (31%), Gaps = 89/482 (18%)
Query: 81 VGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQRRVQPVAGTLALQWLGPHAHA 140
+GA GL + +GL H+ H R AG WL
Sbjct: 292 LGAAVGVRGLAGLQEGLDSRHLLHEAQPLHARRR-----------AGHAGSFWL-----R 335
Query: 141 GDAHGLQLRGQGWAAQHVGLGR---GGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQA 197
G L+ RG G H+G+ G G+A ERG GR G RG +A
Sbjct: 336 GGRDRLR-RGGGHTKSHLGVVTIVPGRRGRAAGGQERGGRGRRRQ----QGRRGRRQA-G 389
Query: 198 PQLLGVGSAGLAAVVGDEAQALAA----GSQRPQGLGRARHGGLPAPQHAVAVEQQRVHV 253
P L V LA +G Q + Q QG R H Q A+ R H
Sbjct: 390 PGLAKVDVDVLAGALGLRWQWVLVHAGQAGQPLQGQARGPHRPAALAQEALRAAAARPHG 449
Query: 254 GQQ-RLCPL-GAQPHAAGVVA---TGLRRR----HRRPPAAAARRPLLAAARRGALPAPG 304
+ R+ L GA P AG +A GLR + P A L+A G G
Sbjct: 450 RRHYRVRGLRGAGPEGAGRLAGPWRGLRLQTLLLQDAPHGGAHEHVLVAVPATGV----G 505
Query: 305 ALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWLA--- 361
L+G A P GCG +G RG+R + G LA
Sbjct: 506 GLVGAGQGAVAAAGNAPERLPAGVQGCGEE--VGRGARGDRVAGGHVEVVPVGQQLAICM 563
Query: 362 -----GLQPAFGVKRSLRKCARGESSAGARPLFPGC----------RGPLTHWKRVVSLG 406
G P V L G + A P C R P G
Sbjct: 564 LHGQLGTAPHAHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGG 623
Query: 407 DEAL------------HGVTRARPAVHWPVSPAGMGG----ALAGAPREGAGAPSSA--- 447
L HG PA P + G G P+ AGAP A
Sbjct: 624 GPGLQDLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVVCPQVAAGAPVGADLD 683
Query: 448 VPVPLCRGRARDTGPPRGSLTGQSREPARGSFPGRREYAPQSFAKTRSRFLGGNTNQPLP 507
V V L G G RG+ ++ AR P + + R GG ++PLP
Sbjct: 684 VSVVLWVGVVGHLGRGRGAGRAEAARAAREGGPHQGVFI--------QRGRGGLGHRPLP 735
Query: 508 GW 509
GW
Sbjct: 736 GW 737
Score = 43.1 bits (100), Expect = 6e-04
Identities = 79/292 (27%), Positives = 100/292 (34%), Gaps = 56/292 (19%)
Query: 51 WAAISTARTRHPGARTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAH 110
W R R G T+ V+ P G +AAG Q G + +
Sbjct: 333 WLRGGRDRLRRGGGHTKSHLGVVTIVP----GRRGRAAG----GQERGGRGRRRQQGRRG 384
Query: 111 HHRAHVGLQR-RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQH-VGLGRGGAGQA 168
+A GL + V +AG L L+W HAG A G L+GQ L + A
Sbjct: 385 RRQAGPGLAKVDVDVLAGALGLRWQWVLVHAGQA-GQPLQGQARGPHRPAALAQEALRAA 443
Query: 169 LAQVERGAVGRAEDLQAGAGPRGAAEAQAP----------------------QLLGVGSA 206
A+ R L+ GAGP GA P L+ V +
Sbjct: 444 AARPHGRRHYRVRGLR-GAGPEGAGRLAGPWRGLRLQTLLLQDAPHGGAHEHVLVAVPAT 502
Query: 207 GLAAVVGDEAQALAAGSQRPQGL-----------GRARHGGLPAPQHAVAVEQQRVHVGQ 255
G+ +VG A+AA P+ L GR G A H + V VGQ
Sbjct: 503 GVGGLVGAGQGAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGHV-----EVVPVGQ 557
Query: 256 Q-RLC----PLGAQPHA-AGVVATGLRRRHRRPPAAAARRPLLAAARRGALP 301
Q +C LG PHA V G AA ARR A R G P
Sbjct: 558 QLAICMLHGQLGTAPHAHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWP 609
Score = 38.5 bits (88), Expect = 0.015
Identities = 70/242 (28%), Positives = 85/242 (35%), Gaps = 42/242 (17%)
Query: 115 HVGLQRRVQPVAGTLALQWLGPHAHAGDAHGLQLRGQ----GWAAQHVGLGRGGAGQALA 170
H+G R A + GPH G G GW Q VG + Q L
Sbjct: 695 HLGRGRGAGRAEAARAAREGGPHQGVFIQRGRGGLGHRPLPGWRGQGVGPLAQPSVQVLG 754
Query: 171 QVERG-AVGRAEDLQA---GAGP---RGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGS 223
+V R AVG A Q G P AA L G +A+V + AQ AG+
Sbjct: 755 RVPRDPAVGAATVAQGPVHGHVPVELTAAAAVSGRGRLRDGLGRVASVAAEGAQVAWAGA 814
Query: 224 QRPQG-----LGRARHGGLPA--PQHAVAVE---QQRVHVGQQRL---CPLGAQPHAAGV 270
QG G AR GG A P V+ Q+RV G++R+ A AG
Sbjct: 815 VLVQGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGA 874
Query: 271 VATGLRRRHRR------------------PPAAAARRPLLAAARRGALPAPGALIGPAPR 312
G R RH PAAAA A +G PGA P+ R
Sbjct: 875 GGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHR 934
Query: 313 AR 314
R
Sbjct: 935 HR 936
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 43.1 bits (100), Expect = 6e-04
Identities = 122/482 (25%), Positives = 153/482 (31%), Gaps = 89/482 (18%)
Query: 81 VGAHEQAAGLLQVAQGLGELHVAEVRVKAHHHRAHVGLQRRVQPVAGTLALQWLGPHAHA 140
+GA GL + +GL H+ H R AG WL
Sbjct: 292 LGAAVGVRGLAGLQEGLDSRHLLHEAQPLHARRR-----------AGHAGSFWL-----R 335
Query: 141 GDAHGLQLRGQGWAAQHVGLGR---GGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQA 197
G L+ RG G H+G+ G G+A ERG GR G RG +A
Sbjct: 336 GGRDRLR-RGGGHTKSHLGVVTIVPGRRGRAAGGQERGGRGRRRQ----QGRRGRRQA-G 389
Query: 198 PQLLGVGSAGLAAVVGDEAQALAA----GSQRPQGLGRARHGGLPAPQHAVAVEQQRVHV 253
P L V LA +G Q + Q QG R H Q A+ R H
Sbjct: 390 PGLAKVDVDVLAGALGLRWQWVLVHAGQAGQPLQGQARGPHRPAALAQEALRAAAARPHG 449
Query: 254 GQQ-RLCPL-GAQPHAAGVVA---TGLRRR----HRRPPAAAARRPLLAAARRGALPAPG 304
+ R+ L GA P AG +A GLR + P A L+A G G
Sbjct: 450 RRHYRVRGLRGAGPEGAGRLAGPWRGLRLQTLLLQDAPHGGAHEHVLVAVPATGV----G 505
Query: 305 ALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWLA--- 361
L+G A P GCG +G RG+R + G LA
Sbjct: 506 GLVGAGQGAVAAAGNAPERLPAGVQGCGEE--VGRGARGDRVAGGHVEVVPVGQQLAICM 563
Query: 362 -----GLQPAFGVKRSLRKCARGESSAGARPLFPGC----------RGPLTHWKRVVSLG 406
G P V L G + A P C R P G
Sbjct: 564 LHGQLGTAPHAHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGG 623
Query: 407 DEAL------------HGVTRARPAVHWPVSPAGMGG----ALAGAPREGAGAPSSA--- 447
L HG PA P + G G P+ AGAP A
Sbjct: 624 GPGLQDLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVVCPQVAAGAPVGADLD 683
Query: 448 VPVPLCRGRARDTGPPRGSLTGQSREPARGSFPGRREYAPQSFAKTRSRFLGGNTNQPLP 507
V V L G G RG+ ++ AR P + + R GG ++PLP
Sbjct: 684 VSVVLWVGVVGHLGRGRGAGRAEAARAAREGGPHQGVFI--------QRGRGGLGHRPLP 735
Query: 508 GW 509
GW
Sbjct: 736 GW 737
Score = 43.1 bits (100), Expect = 6e-04
Identities = 79/292 (27%), Positives = 100/292 (34%), Gaps = 56/292 (19%)
Query: 51 WAAISTARTRHPGARTRDEAAVLKRKPVVHVGAHEQAAGLLQVAQGLGELHVAEVRVKAH 110
W R R G T+ V+ P G +AAG Q G + +
Sbjct: 333 WLRGGRDRLRRGGGHTKSHLGVVTIVP----GRRGRAAG----GQERGGRGRRRQQGRRG 384
Query: 111 HHRAHVGLQR-RVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQH-VGLGRGGAGQA 168
+A GL + V +AG L L+W HAG A G L+GQ L + A
Sbjct: 385 RRQAGPGLAKVDVDVLAGALGLRWQWVLVHAGQA-GQPLQGQARGPHRPAALAQEALRAA 443
Query: 169 LAQVERGAVGRAEDLQAGAGPRGAAEAQAP----------------------QLLGVGSA 206
A+ R L+ GAGP GA P L+ V +
Sbjct: 444 AARPHGRRHYRVRGLR-GAGPEGAGRLAGPWRGLRLQTLLLQDAPHGGAHEHVLVAVPAT 502
Query: 207 GLAAVVGDEAQALAAGSQRPQGL-----------GRARHGGLPAPQHAVAVEQQRVHVGQ 255
G+ +VG A+AA P+ L GR G A H + V VGQ
Sbjct: 503 GVGGLVGAGQGAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGHV-----EVVPVGQ 557
Query: 256 Q-RLC----PLGAQPHA-AGVVATGLRRRHRRPPAAAARRPLLAAARRGALP 301
Q +C LG PHA V G AA ARR A R G P
Sbjct: 558 QLAICMLHGQLGTAPHAHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWP 609
Score = 38.5 bits (88), Expect = 0.015
Identities = 70/242 (28%), Positives = 85/242 (35%), Gaps = 42/242 (17%)
Query: 115 HVGLQRRVQPVAGTLALQWLGPHAHAGDAHGLQLRGQ----GWAAQHVGLGRGGAGQALA 170
H+G R A + GPH G G GW Q VG + Q L
Sbjct: 695 HLGRGRGAGRAEAARAAREGGPHQGVFIQRGRGGLGHRPLPGWRGQGVGPLAQPSVQVLG 754
Query: 171 QVERG-AVGRAEDLQA---GAGP---RGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGS 223
+V R AVG A Q G P AA L G +A+V + AQ AG+
Sbjct: 755 RVPRDPAVGAATVAQGPVHGHVPVELTAAAAVSGRGRLRDGLGRVASVAAEGAQVAWAGA 814
Query: 224 QRPQG-----LGRARHGGLPA--PQHAVAVE---QQRVHVGQQRL---CPLGAQPHAAGV 270
QG G AR GG A P V+ Q+RV G++R+ A AG
Sbjct: 815 VLVQGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGA 874
Query: 271 VATGLRRRHRR------------------PPAAAARRPLLAAARRGALPAPGALIGPAPR 312
G R RH PAAAA A +G PGA P+ R
Sbjct: 875 GGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHR 934
Query: 313 AR 314
R
Sbjct: 935 HR 936
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 43.1 bits (100), Expect = 6e-04
Identities = 86/330 (26%), Positives = 105/330 (31%), Gaps = 80/330 (24%)
Query: 189 PRGAAEAQAPQLLGVGSAGLAAVVGDEAQA---------LAAGSQRPQGLG----RARHG 235
PRG ++ P+ LG S VVG A A GS P+ RAR G
Sbjct: 154 PRGIYASERPKSLGDASPSAPEVVGARAAVPRSFSAPYPTAGGSAGPEACSSAERRARAG 213
Query: 236 GL--PAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRP--- 290
P+P HAVA+ R P G P + P A A RP
Sbjct: 214 PFLTPSPLHAVAMRSPR---------PCGRPPTDS-------------PDAGGAGRPLDG 251
Query: 291 ----LLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERG 346
LL RR P G A R PP GS+ P E
Sbjct: 252 YISALLRRRRRRGAGQPRTSPGGADGGPRRQNSVRQRPPDASPSPGSARPARE------- 304
Query: 347 DHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLG 406
P+L R G P S + ES A P P S
Sbjct: 305 ----PSLERVGG-----HPTSPAALSRAWASSWESEAAPEPAAP---------PAAPSPP 346
Query: 407 DEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGS 466
D G R A + P G A G P G + P PL RGR+ + PPR
Sbjct: 347 DSPAEG--RLVKAQYIP----GAQAATRGLP----GRAARRKPPPLTRGRSVEQSPPRER 396
Query: 467 LTGQSREPARGSFPGRREYAPQSFAKTRSR 496
R GRR +P++ +RS+
Sbjct: 397 PRAAGRRGRMAEASGRRG-SPRARKASRSQ 425
>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 42.7 bits (99), Expect = 8e-04
Identities = 92/371 (24%), Positives = 133/371 (35%), Gaps = 71/371 (19%)
Query: 162 RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGL-AAVVGDEAQALA 220
R GA +A+A ++ P A +G+G A A+ D +QA
Sbjct: 765 RSGASRAIAPTPGTLCSERSRVRRAIAPTPCALCGKGSQVGMGVAPTPGALRRDRSQAGR 824
Query: 221 AGSQRPQGLGR--ARHG-GLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAG---VVATG 274
A + P L R +R G G+ P A+ ++ V ++ + P H G ATG
Sbjct: 825 AIAPTPSALFRVGSRVGTGIALPAGALHRDRSPV---RRAVAPTPGTLHCDGSRKCTATG 881
Query: 275 LRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSS 334
P A R + + PAPGAL RARR +A P P CG
Sbjct: 882 -----STPGALPGDR---SGVSKATAPAPGALCSERSRARRSIA------PTPCLLCGDR 927
Query: 335 APIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRG 394
+ +G + PG L G RKC + GA RG
Sbjct: 928 SWVG-----------MGIAPTPGALLGG---------KSRKCRAIAITPGA------LRG 961
Query: 395 PLTHWKRVVSLGDEALHG--------VTRARPAVHWPVSPAGMG-----GALAG-APREG 440
+ +RVV+ EALHG + A+H SPA GAL G P
Sbjct: 962 GRSQKRRVVAPTPEALHGDGSWTYMAIAPTPGALHGDSSPAHTSIIPSPGALHGDGPPAH 1021
Query: 441 AGAPSSAVPVPLCRGRAR-DTGPPRGSLTGQS------REPARGSFPGRREYAPQSFAKT 493
PS+ + A P G++ G S P+ G+ G R + ++ A T
Sbjct: 1022 MAFPSTPGTLHGDASHAHMAIAPTPGTMRGDSSTARTATAPSPGALRGDRSWKRKAIAST 1081
Query: 494 RSRFLGGNTNQ 504
G +++
Sbjct: 1082 PGALHGNRSDR 1092
Score = 33.9 bits (76), Expect = 0.36
Identities = 66/271 (24%), Positives = 83/271 (30%), Gaps = 70/271 (25%)
Query: 259 CPLGAQPHAAGV----VATGLRRRHRRPPAAAARRP-----LLAAARRGALPAPGALIGP 309
CPL G+ +A LRR A A P + AR P PG L G
Sbjct: 597 CPLCEIWSRVGIGIAPIADALRRDRSPVRRAIAPTPGTLSGYRSRARTAIAPTPGTLRGY 656
Query: 310 APRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGV 369
PR+RR +A T A RGE+ PG
Sbjct: 657 RPRSRRAIASTPA-----------------TLRGEKSRAHTSLAPAPG------------ 687
Query: 370 KRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPA-- 427
RG+ S R + P W RV + R RP V ++P
Sbjct: 688 ------ALRGDGSRARRAIVPTTCPLCEIWSRVGIGIAPIADALRRDRPPVRRAIAPTPG 741
Query: 428 --------------GMGGALAGAPREGAGAPSSAVPVPLC--RGRARDTGPP-------R 464
GAL + R GA + P LC R R R P +
Sbjct: 742 ALRCDRSRELTAIDPTPGALC-SDRSGASRAIAPTPGTLCSERSRVRRAIAPTPCALCGK 800
Query: 465 GSLTGQSREPARGSFPGRREYAPQSFAKTRS 495
GS G P G+ R A ++ A T S
Sbjct: 801 GSQVGMGVAPTPGALRRDRSQAGRAIAPTPS 831
Score = 33.5 bits (75), Expect = 0.48
Identities = 62/248 (25%), Positives = 83/248 (33%), Gaps = 37/248 (14%)
Query: 283 PAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFAN-PPPPPAGCGSSAPIGEAR 341
P A R +AAR +P PGAL RAR +A T + C + AP A
Sbjct: 414 PTPGALRGDRSAARTAFVPTPGALHRDRSRARSAIASTPGTLRGNTSSACKAIAPTPGAL 473
Query: 342 RGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLF---PGCRGPLTH 398
RG + PG W G + G + A G + + AR PG
Sbjct: 474 RGYKSWARRAIAPNPGAW-RGYRSTTGTAIAPNLGALGGNRSAARTDIAPTPGALRGYRS 532
Query: 399 WKRVVSLGDEALHGVTRARPAVHWPVSPAGMGG-------ALAGAP----REGAGAPSSA 447
W R R+R +PA + G +LA P +G+ A +
Sbjct: 533 WTRRAIAPTPGTLSSYRSRSRRTIASTPATLRGEKSRAHTSLAPTPGALRGDGSRARRAI 592
Query: 448 VPV--PLCR--------------GRARDTGPPRGSLTGQSREPARGSFPGRREYAPQSFA 491
VP PLC RD P R ++ P G+ G R A + A
Sbjct: 593 VPTTCPLCEIWSRVGIGIAPIADALRRDRSPVRRAIA-----PTPGTLSGYRSRARTAIA 647
Query: 492 KTRSRFLG 499
T G
Sbjct: 648 PTPGTLRG 655
Score = 33.1 bits (74), Expect = 0.62
Identities = 59/230 (25%), Positives = 78/230 (33%), Gaps = 35/230 (15%)
Query: 278 RHRRPPAAAARRPLLAAARRGA----LPAPGALIGPAPRARRPLACTFANPPPPPAGCGS 333
R + P A A L R GA P PGA++ RARR +
Sbjct: 171 RSQEPTAIAPTPGALPGDRSGAPRAIAPTPGAMLSGRSRARRAI---------------- 214
Query: 334 SAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCR 393
AP A RG R PG + A R G S R + P
Sbjct: 215 -APTPSALRGYRSWAHRAIAPTPGCLYSDRSRAHRAIAPARGTKHGGRSWACRSIAPK-P 272
Query: 394 GPLTHWKRVVSLGDEALHGVTR-ARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPL 452
G L + S + G R R H ++P G+L G GA + P L
Sbjct: 273 GSLCGDRSQASRAIDPTLGARRGGRSRAHRAIAPT--PGSLCGNRSRACGA-IALTPGVL 329
Query: 453 CRGRAR---DTGPPRGSLTG------QSREPARGSFPGRREYAPQSFAKT 493
C R+R D P G+L G ++ P G+ G R A + +T
Sbjct: 330 CGVRSRVPKDITPTPGALRGYKSWVCRAIAPTPGALRGDRSAARTAVVRT 379
Score = 32.0 bits (71), Expect = 1.4
Identities = 61/244 (25%), Positives = 85/244 (34%), Gaps = 29/244 (11%)
Query: 283 PAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFA-----------NPPPPPAG- 330
P ARR + A R P PG+L G RA +A T + P P
Sbjct: 288 PTLGARRGGRSRAHRAIAPTPGSLCGNRSRACGAIALTPGVLCGVRSRVPKDITPTPGAL 347
Query: 331 -------CGSSAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSA 383
C + AP A RG+R + PG A S +G S+
Sbjct: 348 RGYKSWVCRAIAPTPGALRGDRSAARTAVVRTPGALGRDRSRARSAIASTPGTLQGNRSS 407
Query: 384 GARPLFP---GCRGPLTHWKRVVSLGDEALH-GVTRARPAVHWPVSPAGMGGALAGAPRE 439
++ + P RG + + ALH +RAR A+ +P + G + A +
Sbjct: 408 VSKAIAPTPGALRGDRSAARTAFVPTPGALHRDRSRARSAI--ASTPGTLRGNTSSACKA 465
Query: 440 GAGAPSS--AVPVPLCRGRARDTGPPRG--SLTGQSREPARGSFPGRREYAPQSFAKTRS 495
A P + R A + G RG S TG + P G+ G R A A T
Sbjct: 466 IAPTPGALRGYKSWARRAIAPNPGAWRGYRSTTGTAIAPNLGALGGNRSAARTDIAPTPG 525
Query: 496 RFLG 499
G
Sbjct: 526 ALRG 529
Score = 29.6 bits (65), Expect = 6.9
Identities = 51/183 (27%), Positives = 68/183 (37%), Gaps = 28/183 (15%)
Query: 276 RRRHRRPPAA--AARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCG- 332
R R RR A+ A R + A P PGAL G RARR + T + G
Sbjct: 549 RSRSRRTIASTPATLRGEKSRAHTSLAPTPGALRGDGSRARRAIVPTTCPLCEIWSRVGI 608
Query: 333 SSAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGC 392
API +A R +R PG L+G R + P
Sbjct: 609 GIAPIADALRRDRSPVRRAIAPTPGT-LSGY--------------RSRARTAIAPTPGTL 653
Query: 393 RGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPV-- 450
RG +R ++ L G + H ++PA GAL G +G+ A + VP
Sbjct: 654 RGYRPRSRRAIASTPATLRG---EKSRAHTSLAPA--PGALRG---DGSRARRAIVPTTC 705
Query: 451 PLC 453
PLC
Sbjct: 706 PLC 708
>gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 42.7 bits (99), Expect = 8e-04
Identities = 92/371 (24%), Positives = 133/371 (35%), Gaps = 71/371 (19%)
Query: 162 RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGL-AAVVGDEAQALA 220
R GA +A+A ++ P A +G+G A A+ D +QA
Sbjct: 765 RSGASRAIAPTPGTLCSERSRVRRAIAPTPCALCGKGSQVGMGVAPTPGALRRDRSQAGR 824
Query: 221 AGSQRPQGLGR--ARHG-GLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAG---VVATG 274
A + P L R +R G G+ P A+ ++ V ++ + P H G ATG
Sbjct: 825 AIAPTPSALFRVGSRVGTGIALPAGALHRDRSPV---RRAVAPTPGTLHCDGSRKCTATG 881
Query: 275 LRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSS 334
P A R + + PAPGAL RARR +A P P CG
Sbjct: 882 -----STPGALPGDR---SGVSKATAPAPGALCSERSRARRSIA------PTPCLLCGDR 927
Query: 335 APIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRG 394
+ +G + PG L G RKC + GA RG
Sbjct: 928 SWVG-----------MGIAPTPGALLGG---------KSRKCRAIAITPGA------LRG 961
Query: 395 PLTHWKRVVSLGDEALHG--------VTRARPAVHWPVSPAGMG-----GALAG-APREG 440
+ +RVV+ EALHG + A+H SPA GAL G P
Sbjct: 962 GRSQKRRVVAPTPEALHGDGSWTYMAIAPTPGALHGDSSPAHTSIIPSPGALHGDGPPAH 1021
Query: 441 AGAPSSAVPVPLCRGRAR-DTGPPRGSLTGQS------REPARGSFPGRREYAPQSFAKT 493
PS+ + A P G++ G S P+ G+ G R + ++ A T
Sbjct: 1022 MAFPSTPGTLHGDASHAHMAIAPTPGTMRGDSSTARTATAPSPGALRGDRSWKRKAIAST 1081
Query: 494 RSRFLGGNTNQ 504
G +++
Sbjct: 1082 PGALHGNRSDR 1092
Score = 35.0 bits (79), Expect = 0.16
Identities = 63/248 (25%), Positives = 84/248 (33%), Gaps = 37/248 (14%)
Query: 283 PAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFAN-PPPPPAGCGSSAPIGEAR 341
PA A R +AAR +P PGAL RAR +A T + C + AP A
Sbjct: 414 PAPGALRGDRSAARTAFVPTPGALHRDRSRARSAIASTPGTLRGNTSSACKAIAPTPGAL 473
Query: 342 RGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLF---PGCRGPLTH 398
RG + PG W G + G + A G + + AR PG
Sbjct: 474 RGYKSWARRAIAPNPGAW-RGYRSTTGTAIAPNLGALGGNRSAARTDIAPTPGALRGYRS 532
Query: 399 WKRVVSLGDEALHGVTRARPAVHWPVSPAGMGG-------ALAGAP----REGAGAPSSA 447
W R R+R +PA + G +LA P +G+ A +
Sbjct: 533 WTRRAIAPTPGTLSSYRSRSRRTIASTPATLRGEKSRAHTSLAPTPGALRGDGSRARRAI 592
Query: 448 VPV--PLCR--------------GRARDTGPPRGSLTGQSREPARGSFPGRREYAPQSFA 491
VP PLC RD P R ++ P G+ G R A + A
Sbjct: 593 VPTTCPLCEIWSRVGIGIAPIADALRRDRSPVRRAIA-----PTPGTLSGYRSRARTAIA 647
Query: 492 KTRSRFLG 499
T G
Sbjct: 648 PTPGTLRG 655
Score = 33.9 bits (76), Expect = 0.36
Identities = 66/271 (24%), Positives = 83/271 (30%), Gaps = 70/271 (25%)
Query: 259 CPLGAQPHAAGV----VATGLRRRHRRPPAAAARRP-----LLAAARRGALPAPGALIGP 309
CPL G+ +A LRR A A P + AR P PG L G
Sbjct: 597 CPLCEIWSRVGIGIAPIADALRRDRSPVRRAIAPTPGTLSGYRSRARTAIAPTPGTLRGY 656
Query: 310 APRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGV 369
PR+RR +A T A RGE+ PG
Sbjct: 657 RPRSRRAIASTPA-----------------TLRGEKSRAHTSLAPAPG------------ 687
Query: 370 KRSLRKCARGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPA-- 427
RG+ S R + P W RV + R RP V ++P
Sbjct: 688 ------ALRGDGSRARRAIVPTTCPLCEIWSRVGIGIAPIADALRRDRPPVRRAIAPTPG 741
Query: 428 --------------GMGGALAGAPREGAGAPSSAVPVPLC--RGRARDTGPP-------R 464
GAL + R GA + P LC R R R P +
Sbjct: 742 ALRCDRSRELTAIDPTPGALC-SDRSGASRAIAPTPGTLCSERSRVRRAIAPTPCALCGK 800
Query: 465 GSLTGQSREPARGSFPGRREYAPQSFAKTRS 495
GS G P G+ R A ++ A T S
Sbjct: 801 GSQVGMGVAPTPGALRRDRSQAGRAIAPTPS 831
Score = 33.5 bits (75), Expect = 0.48
Identities = 59/230 (25%), Positives = 78/230 (33%), Gaps = 35/230 (15%)
Query: 278 RHRRPPAAAARRPLLAAARRGA----LPAPGALIGPAPRARRPLACTFANPPPPPAGCGS 333
R + P A A L R GA P PGA++ RARR +
Sbjct: 171 RSQEPTAIAPTPGALPGDRSGAPRAIAPTPGAMLSGRSRARRAI---------------- 214
Query: 334 SAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCR 393
AP A RG R PG + A R G S R + P
Sbjct: 215 -APTPSALRGYRSWAHRAIAPTPGCLYSDRSRAHRAIAPARGTKHGGRSWACRSIAPK-P 272
Query: 394 GPLTHWKRVVSLGDEALHGVTR-ARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPL 452
G L + S + G R R H ++P G+L G GA + P L
Sbjct: 273 GSLCGDRSQASRAIDPTLGARRGGRSRAHRAIAPT--PGSLCGNRSRACGA-IALTPGVL 329
Query: 453 CRGRAR---DTGPPRGSLTG------QSREPARGSFPGRREYAPQSFAKT 493
C R+R D P G+L G ++ P G+ G R A + +T
Sbjct: 330 CGVRSRVPKDITPTPGALRGYKSWVCRAIAPTPGALRGDRSAARTAIVRT 379
Score = 31.6 bits (70), Expect = 1.8
Identities = 61/244 (25%), Positives = 85/244 (34%), Gaps = 29/244 (11%)
Query: 283 PAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFA-----------NPPPPPAG- 330
P ARR + A R P PG+L G RA +A T + P P
Sbjct: 288 PTLGARRGGRSRAHRAIAPTPGSLCGNRSRACGAIALTPGVLCGVRSRVPKDITPTPGAL 347
Query: 331 -------CGSSAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSA 383
C + AP A RG+R + PG A S +G S+
Sbjct: 348 RGYKSWVCRAIAPTPGALRGDRSAARTAIVRTPGALGRDRSRARSAIASTPGTLQGNRSS 407
Query: 384 GARPLFP---GCRGPLTHWKRVVSLGDEALH-GVTRARPAVHWPVSPAGMGGALAGAPRE 439
++ + P RG + + ALH +RAR A+ +P + G + A +
Sbjct: 408 VSKAIAPAPGALRGDRSAARTAFVPTPGALHRDRSRARSAI--ASTPGTLRGNTSSACKA 465
Query: 440 GAGAPSS--AVPVPLCRGRARDTGPPRG--SLTGQSREPARGSFPGRREYAPQSFAKTRS 495
A P + R A + G RG S TG + P G+ G R A A T
Sbjct: 466 IAPTPGALRGYKSWARRAIAPNPGAWRGYRSTTGTAIAPNLGALGGNRSAARTDIAPTPG 525
Query: 496 RFLG 499
G
Sbjct: 526 ALRG 529
Score = 29.6 bits (65), Expect = 6.9
Identities = 51/183 (27%), Positives = 68/183 (37%), Gaps = 28/183 (15%)
Query: 276 RRRHRRPPAA--AARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCG- 332
R R RR A+ A R + A P PGAL G RARR + T + G
Sbjct: 549 RSRSRRTIASTPATLRGEKSRAHTSLAPTPGALRGDGSRARRAIVPTTCPLCEIWSRVGI 608
Query: 333 SSAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGC 392
API +A R +R PG L+G R + P
Sbjct: 609 GIAPIADALRRDRSPVRRAIAPTPGT-LSGY--------------RSRARTAIAPTPGTL 653
Query: 393 RGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPV-- 450
RG +R ++ L G + H ++PA GAL G +G+ A + VP
Sbjct: 654 RGYRPRSRRAIASTPATLRG---EKSRAHTSLAPA--PGALRG---DGSRARRAIVPTTC 705
Query: 451 PLC 453
PLC
Sbjct: 706 PLC 708
Score = 29.6 bits (65), Expect = 6.9
Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 282 PPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEAR 341
P A R + R+ P PGA PR R AC P P G SS I
Sbjct: 1232 PGALLGNRSDRSRKRKAIAPTPGA-----PRIDRSPACRAIAPTPGALGDDSSTAIAPTP 1286
Query: 342 RGERGD 347
RGD
Sbjct: 1287 GTPRGD 1292
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 42.7 bits (99), Expect = 8e-04
Identities = 92/371 (24%), Positives = 133/371 (35%), Gaps = 71/371 (19%)
Query: 162 RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGL-AAVVGDEAQALA 220
R GA +A+A ++ P A +G+G A A+ D +QA
Sbjct: 733 RSGASRAIAPTPGTLCSERSRVRRAIAPTPCALCGKGSQVGMGVAPTPGALRRDRSQAGR 792
Query: 221 AGSQRPQGLGR--ARHG-GLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAG---VVATG 274
A + P L R +R G G+ P A+ ++ V ++ + P H G ATG
Sbjct: 793 AIAPTPSALFRVGSRVGTGIALPAGALHRDRSPV---RRAVAPTPGTLHCDGSRKCTATG 849
Query: 275 LRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSS 334
P A R + + PAPGAL RARR +A P P CG
Sbjct: 850 -----STPGALPGDR---SGVSKATAPAPGALCSERSRARRSIA------PTPCLLCGDR 895
Query: 335 APIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRG 394
+ +G + PG L G RKC + GA RG
Sbjct: 896 SWVG-----------MGIAPTPGALLGG---------KSRKCRAIAITPGA------LRG 929
Query: 395 PLTHWKRVVSLGDEALHG--------VTRARPAVHWPVSPAGMG-----GALAG-APREG 440
+ +RVV+ EALHG + A+H SPA GAL G P
Sbjct: 930 GRSQKRRVVAPTPEALHGDGSWTYMAIAPTPGALHGDSSPAHTSIIPSPGALHGDGPPAH 989
Query: 441 AGAPSSAVPVPLCRGRAR-DTGPPRGSLTGQS------REPARGSFPGRREYAPQSFAKT 493
PS+ + A P G++ G S P+ G+ G R + ++ A T
Sbjct: 990 MAFPSTPGTLHGDASHAHMAIAPTPGTMRGDSSTARTATAPSPGALRGDRSWKRKAIAST 1049
Query: 494 RSRFLGGNTNQ 504
G +++
Sbjct: 1050 PGALHGNRSDR 1060
Score = 38.9 bits (89), Expect = 0.011
Identities = 59/223 (26%), Positives = 78/223 (34%), Gaps = 19/223 (8%)
Query: 283 PAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFAN-PPPPPAGCGSSAPIGEAR 341
PA A R +AAR +P PGAL RAR +A T + C + AP A
Sbjct: 414 PAPGALRGDRSAARTAFVPTPGALHRDRSRARSAIASTPGTLRGNTSSACKAIAPTPGAL 473
Query: 342 RGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLF---PGCRGPLTH 398
RG + PG W G + G + A G + + AR PG
Sbjct: 474 RGYKSWARRAIAPNPGAW-RGYRSTTGTAIAPNLGALGGNRSAARTDIAPTPGALRGYRS 532
Query: 399 WKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVP--LCRGR 456
W R R+R +PA + G E + A +S P P L
Sbjct: 533 WTRRAIAPTPGTLSSYRSRSRRTIASTPATLRG-------EKSRAHTSLAPTPGALRDAL 585
Query: 457 ARDTGPPRGSLTGQSREPARGSFPGRREYAPQSFAKTRSRFLG 499
RD P R ++ P G+ G R A + A T G
Sbjct: 586 RRDRSPVRRAIA-----PTPGTLSGYRSRARTAIAPTPGTLRG 623
Score = 33.5 bits (75), Expect = 0.48
Identities = 59/230 (25%), Positives = 78/230 (33%), Gaps = 35/230 (15%)
Query: 278 RHRRPPAAAARRPLLAAARRGA----LPAPGALIGPAPRARRPLACTFANPPPPPAGCGS 333
R + P A A L R GA P PGA++ RARR +
Sbjct: 171 RSQEPTAIAPTPGALPGDRSGAPRAIAPTPGAMLSGRSRARRAI---------------- 214
Query: 334 SAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCR 393
AP A RG R PG + A R G S R + P
Sbjct: 215 -APTPSALRGYRSWAHRAIAPTPGCLYSDRSRAHRAIAPARGTKHGGRSWACRSIAPK-P 272
Query: 394 GPLTHWKRVVSLGDEALHGVTR-ARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPL 452
G L + S + G R R H ++P G+L G GA + P L
Sbjct: 273 GSLCGDRSQASRAIDPTLGARRGGRSRAHRAIAPT--PGSLCGNRSRACGA-IALTPGVL 329
Query: 453 CRGRAR---DTGPPRGSLTG------QSREPARGSFPGRREYAPQSFAKT 493
C R+R D P G+L G ++ P G+ G R A + +T
Sbjct: 330 CGVRSRVPKDITPTPGALRGYKSWVCRAIAPTPGALRGDRSAARTAIVRT 379
Score = 32.7 bits (73), Expect = 0.81
Identities = 63/252 (25%), Positives = 78/252 (30%), Gaps = 33/252 (13%)
Query: 276 RRRHRRPPAA--AARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGS 333
R R RR A+ A R + A P PGAL R R P+ A P +G S
Sbjct: 549 RSRSRRTIASTPATLRGEKSRAHTSLAPTPGALRDALRRDRSPVRRAIAPTPGTLSGYRS 608
Query: 334 S-----APIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPL 388
AP RG R P A RG+ S R +
Sbjct: 609 RARTAIAPTPGTLRGYRPRSRRAIASTPATLRGEKSRAHTSLAPAPGALRGDGSRARRAI 668
Query: 389 FPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPA----------------GMGGA 432
P W RV + R RP V ++P GA
Sbjct: 669 VPTTCPLCEIWSRVGIGIAPIADALRRDRPPVRRAIAPTPGALRCDRSRELTAIDPTPGA 728
Query: 433 LAGAPREGAGAPSSAVPVPLC--RGRARDTGPP-------RGSLTGQSREPARGSFPGRR 483
L + R GA + P LC R R R P +GS G P G+ R
Sbjct: 729 LC-SDRSGASRAIAPTPGTLCSERSRVRRAIAPTPCALCGKGSQVGMGVAPTPGALRRDR 787
Query: 484 EYAPQSFAKTRS 495
A ++ A T S
Sbjct: 788 SQAGRAIAPTPS 799
Score = 31.6 bits (70), Expect = 1.8
Identities = 61/244 (25%), Positives = 85/244 (34%), Gaps = 29/244 (11%)
Query: 283 PAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFA-----------NPPPPPAG- 330
P ARR + A R P PG+L G RA +A T + P P
Sbjct: 288 PTLGARRGGRSRAHRAIAPTPGSLCGNRSRACGAIALTPGVLCGVRSRVPKDITPTPGAL 347
Query: 331 -------CGSSAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSA 383
C + AP A RG+R + PG A S +G S+
Sbjct: 348 RGYKSWVCRAIAPTPGALRGDRSAARTAIVRTPGALGRDRSRARSAIASTPGTLQGNRSS 407
Query: 384 GARPLFP---GCRGPLTHWKRVVSLGDEALH-GVTRARPAVHWPVSPAGMGGALAGAPRE 439
++ + P RG + + ALH +RAR A+ +P + G + A +
Sbjct: 408 VSKAIAPAPGALRGDRSAARTAFVPTPGALHRDRSRARSAI--ASTPGTLRGNTSSACKA 465
Query: 440 GAGAPSS--AVPVPLCRGRARDTGPPRG--SLTGQSREPARGSFPGRREYAPQSFAKTRS 495
A P + R A + G RG S TG + P G+ G R A A T
Sbjct: 466 IAPTPGALRGYKSWARRAIAPNPGAWRGYRSTTGTAIAPNLGALGGNRSAARTDIAPTPG 525
Query: 496 RFLG 499
G
Sbjct: 526 ALRG 529
Score = 30.4 bits (67), Expect = 4.0
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 274 GLRRRHRRPPAA--AARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGC 331
G R R RR A+ A R + A PAPGAL G RARR + T +
Sbjct: 623 GYRPRSRRAIASTPATLRGEKSRAHTSLAPAPGALRGDGSRARRAIVPTTCPLCEIWSRV 682
Query: 332 G-SSAPIGEARRGER 345
G API +A R +R
Sbjct: 683 GIGIAPIADALRRDR 697
Score = 29.6 bits (65), Expect = 6.9
Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 282 PPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEAR 341
P A R + R+ P PGA PR R AC P P G SS I
Sbjct: 1200 PGALLGNRSDRSRKRKAIAPTPGA-----PRIDRSPACRAIAPTPGALGDDSSTAIAPTP 1254
Query: 342 RGERGD 347
RGD
Sbjct: 1255 GTPRGD 1260
>gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1934
Score = 42.7 bits (99), Expect = 8e-04
Identities = 92/371 (24%), Positives = 133/371 (35%), Gaps = 71/371 (19%)
Query: 162 RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGL-AAVVGDEAQALA 220
R GA +A+A ++ P A +G+G A A+ D +QA
Sbjct: 639 RSGASRAIAPTPGTLCSERSRVRRAIAPTPCALCGKGSQVGMGVAPTPGALRRDRSQAGR 698
Query: 221 AGSQRPQGLGR--ARHG-GLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAG---VVATG 274
A + P L R +R G G+ P A+ ++ V ++ + P H G ATG
Sbjct: 699 AIAPTPSALFRVGSRVGTGIALPAGALHRDRSPV---RRAVAPTPGTLHCDGSRKCTATG 755
Query: 275 LRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSS 334
P A R + + PAPGAL RARR +A P P CG
Sbjct: 756 -----STPGALPGDR---SGVSKATAPAPGALCSERSRARRSIA------PTPCLLCGDR 801
Query: 335 APIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCRG 394
+ +G + PG L G RKC + GA RG
Sbjct: 802 SWVG-----------MGIAPTPGALLGG---------KSRKCRAIAITPGA------LRG 835
Query: 395 PLTHWKRVVSLGDEALHG--------VTRARPAVHWPVSPAGMG-----GALAG-APREG 440
+ +RVV+ EALHG + A+H SPA GAL G P
Sbjct: 836 GRSQKRRVVAPTPEALHGDGSWTYMAIAPTPGALHGDSSPAHTSIIPSPGALHGDGPPAH 895
Query: 441 AGAPSSAVPVPLCRGRAR-DTGPPRGSLTGQS------REPARGSFPGRREYAPQSFAKT 493
PS+ + A P G++ G S P+ G+ G R + ++ A T
Sbjct: 896 MAFPSTPGTLHGDASHAHMAIAPTPGTMRGDSSTARTATAPSPGALRGDRSWKRKAIAST 955
Query: 494 RSRFLGGNTNQ 504
G +++
Sbjct: 956 PGALHGNRSDR 966
Score = 40.0 bits (92), Expect = 0.005
Identities = 52/178 (29%), Positives = 71/178 (39%), Gaps = 16/178 (8%)
Query: 283 PAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFAN-PPPPPAGCGSSAPIGEAR 341
PA A R +AAR +P PGAL RAR +A T + C + AP A
Sbjct: 414 PAPGALRGDRSAARTAFVPTPGALHRDRSRARSAIASTPGTLRGNTSSACKAIAPTPGAL 473
Query: 342 RGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGAR----PLFPGCRGPLT 397
RG + PG W G + G + A G + + AR P RG
Sbjct: 474 RGYKSWARRAIAPNPGAW-RGYRSTTGTAIAPNLGALGGNRSAARTDIAPTPGALRGYRP 532
Query: 398 HWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPV--PLC 453
+R ++ L G + H ++PA GAL G +G+ A + VP PLC
Sbjct: 533 RSRRAIASTPATLRG---EKSRAHTSLAPA--PGALRG---DGSRARRAIVPTTCPLC 582
Score = 33.5 bits (75), Expect = 0.48
Identities = 59/230 (25%), Positives = 78/230 (33%), Gaps = 35/230 (15%)
Query: 278 RHRRPPAAAARRPLLAAARRGA----LPAPGALIGPAPRARRPLACTFANPPPPPAGCGS 333
R + P A A L R GA P PGA++ RARR +
Sbjct: 171 RSQEPTAIAPTPGALPGDRSGAPRAIAPTPGAMLSGRSRARRAI---------------- 214
Query: 334 SAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAGARPLFPGCR 393
AP A RG R PG + A R G S R + P
Sbjct: 215 -APTPSALRGYRSWAHRAIAPTPGCLYSDRSRAHRAIAPARGTKHGGRSWACRSIAPK-P 272
Query: 394 GPLTHWKRVVSLGDEALHGVTR-ARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVPVPL 452
G L + S + G R R H ++P G+L G GA + P L
Sbjct: 273 GSLCGDRSQASRAIDPTLGARRGGRSRAHRAIAPT--PGSLCGNRSRACGA-IALTPGVL 329
Query: 453 CRGRAR---DTGPPRGSLTG------QSREPARGSFPGRREYAPQSFAKT 493
C R+R D P G+L G ++ P G+ G R A + +T
Sbjct: 330 CGVRSRVPKDITPTPGALRGYKSWVCRAIAPTPGALRGDRSAARTAIVRT 379
Score = 31.6 bits (70), Expect = 1.8
Identities = 61/244 (25%), Positives = 85/244 (34%), Gaps = 29/244 (11%)
Query: 283 PAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFA-----------NPPPPPAG- 330
P ARR + A R P PG+L G RA +A T + P P
Sbjct: 288 PTLGARRGGRSRAHRAIAPTPGSLCGNRSRACGAIALTPGVLCGVRSRVPKDITPTPGAL 347
Query: 331 -------CGSSAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSA 383
C + AP A RG+R + PG A S +G S+
Sbjct: 348 RGYKSWVCRAIAPTPGALRGDRSAARTAIVRTPGALGRDRSRARSAIASTPGTLQGNRSS 407
Query: 384 GARPLFP---GCRGPLTHWKRVVSLGDEALH-GVTRARPAVHWPVSPAGMGGALAGAPRE 439
++ + P RG + + ALH +RAR A+ +P + G + A +
Sbjct: 408 VSKAIAPAPGALRGDRSAARTAFVPTPGALHRDRSRARSAI--ASTPGTLRGNTSSACKA 465
Query: 440 GAGAPSS--AVPVPLCRGRARDTGPPRG--SLTGQSREPARGSFPGRREYAPQSFAKTRS 495
A P + R A + G RG S TG + P G+ G R A A T
Sbjct: 466 IAPTPGALRGYKSWARRAIAPNPGAWRGYRSTTGTAIAPNLGALGGNRSAARTDIAPTPG 525
Query: 496 RFLG 499
G
Sbjct: 526 ALRG 529
Score = 30.4 bits (67), Expect = 4.0
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 274 GLRRRHRRPPAA--AARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGC 331
G R R RR A+ A R + A PAPGAL G RARR + T +
Sbjct: 529 GYRPRSRRAIASTPATLRGEKSRAHTSLAPAPGALRGDGSRARRAIVPTTCPLCEIWSRV 588
Query: 332 G-SSAPIGEARRGER 345
G API +A R +R
Sbjct: 589 GIGIAPIADALRRDR 603
Score = 29.6 bits (65), Expect = 6.9
Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 282 PPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEAR 341
P A R + R+ P PGA PR R AC P P G SS I
Sbjct: 1106 PGALLGNRSDRSRKRKAIAPTPGA-----PRIDRSPACRAIAPTPGALGDDSSTAIAPTP 1160
Query: 342 RGERGD 347
RGD
Sbjct: 1161 GTPRGD 1166
>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
Length = 391
Score = 42.0 bits (97), Expect = 0.001
Identities = 96/323 (29%), Positives = 120/323 (37%), Gaps = 68/323 (21%)
Query: 106 RVKAHHHRAHVGLQRRVQPVAGTLALQWLGPHAHAGDAHGLQLRGQGWAAQHVGLGRG-G 164
R++A H + H + R P T L ++ AG GL G G V +G G G
Sbjct: 106 RLRALHMKEHPDYKYR--PRRKTKTLLKKDKYSLAG---GLLAAGAGGGGAAVAMGVGVG 160
Query: 165 AGQALAQVERGAVGRAEDLQAGAGPRGAAE----AQAPQLLGVGSAGLAAVVGDEAQALA 220
G A AVG+ + GA G A A V +A AA + EAQ LA
Sbjct: 161 VGAA-------AVGQRLESPGGAAGGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQ-LA 212
Query: 221 AGSQRPQGLGRAR---HGGLPAPQHAVA-----VEQQRVHVGQQRLCPL----------- 261
G Q P G G A H P P H A R +G + P+
Sbjct: 213 YG-QHP-GAGGAHPHAHPAHPHPHHPHAHPHNPQPMHRYDMGALQYSPISNSQGYMSASP 270
Query: 262 ---GAQPH-AAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPL 317
G P+ AA A H+ AAA AAA GAL A G+L+ P
Sbjct: 271 SGYGGLPYGAAAAAAAAAGGAHQNSAVAAAAAA--AAASSGALGALGSLVKSEP------ 322
Query: 318 ACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCA 377
+ PP PA + P G+ R E +LPA G GD A A + L
Sbjct: 323 ----SGSPPAPAHSRAPCP-GDLR--EMISMYLPA-GEGGDPAAA--AAAAAQSRLHSLP 372
Query: 378 RGESSAGARPLFPGCRG--PLTH 398
+ AGA G G PLTH
Sbjct: 373 QHYQGAGA-----GVNGTVPLTH 390
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 41.6 bits (96), Expect = 0.002
Identities = 58/209 (27%), Positives = 73/209 (34%), Gaps = 24/209 (11%)
Query: 146 LQLRGQGWAAQHVGLGRGGA--GQALAQVERGAVGRAEDLQAGAGP-----RGAA---EA 195
LQ +G W Q LG GA G + V A +++ GP R AA A
Sbjct: 30 LQRKGLFWRYQKT-LGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPA 88
Query: 196 QAPQLLG--VGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGLPAPQHAVAVEQQRVHV 253
+A + G G AG +A A G R G+ A A
Sbjct: 89 RASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRS 148
Query: 254 GQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAP-- 311
R P P G R RRP +AA R ++ R A+P PGA AP
Sbjct: 149 VPARRLP----PPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGT 204
Query: 312 -----RARRPLACTFANPPPPPAGCGSSA 335
P A + PPPPA G+ A
Sbjct: 205 WPVGFAVAAPPAAAASVAPPPPAVAGAPA 233
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 41.6 bits (96), Expect = 0.002
Identities = 100/357 (28%), Positives = 123/357 (34%), Gaps = 40/357 (11%)
Query: 162 RGGAGQALAQVERGA-----VGRAEDLQAGAG-PRGAAEAQAPQLLGVGSAGLAAVVGDE 215
RGG G+A A++ RG VG GA P G E +A L V AG +
Sbjct: 489 RGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLP 548
Query: 216 AQALAAGSQRPQGLGRARHGGLP-APQHAVAVEQQRVHVGQQRLCPLGAQPHAAG---VV 271
A G + P G+ HG L A A A G QR L A VV
Sbjct: 549 ELAERLGGRCP---GQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVV 605
Query: 272 ATGLRRRHRRPPAAAARRPLLAAARRGALPAPG-ALIGPAPRARRPLACTFANPPPPPAG 330
+ LRR RR R +A AL G G A+ P + T P +
Sbjct: 606 SPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSE 665
Query: 331 CGSSAPIGEARRGERGDHWLPALGR-PGDWLAGLQPAFGVKRSLRKCARGESSAGARPLF 389
G +AP+ ERG PA R PG L G P G C RG L
Sbjct: 666 WGLAAPLSP----ERGSPGRPAFLRSPG--LCGPGPVPGGLSVPTPCGRGAGDFSEADLA 719
Query: 390 PGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAPREGAGAPSSAVP 449
+ G + G R R W + A GAPRE A +A P
Sbjct: 720 D---------RAFPVRGAGPIAGRRRRRG---WTFAAA----LRKGAPREQPPASPAASP 763
Query: 450 VPLCRGRARDTGPP--RGSLTGQSREPARGSFPGRREYAPQSFAKTRSRFLGGNTNQ 504
R ++T P RG T + P + PG RSR LG + Q
Sbjct: 764 CQAPRAPEKETEAPRLRGRATAVAPRPLPAA-PGFSGLCVLQPFPARSRGLGVPSQQ 819
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 41.6 bits (96), Expect = 0.002
Identities = 37/88 (42%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 260 PLGAQPHAAGVVATGLRRRHRRPPA-----AAARRPLLAAARRGALPAPGALIGPAPRAR 314
P GA P AA A PPA A AR P AAA A P+PG P PRA+
Sbjct: 115 PRGA-PAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPA-QPGPRAQ 172
Query: 315 RPLACTFANPPPPPAGCGSSAPIGEARR 342
R A A PPP PA + AP RR
Sbjct: 173 R--AAPLAAPPPAPAAPPAVAPPAGPRR 198
Score = 32.0 bits (71), Expect = 1.4
Identities = 57/232 (24%), Positives = 72/232 (31%), Gaps = 45/232 (19%)
Query: 281 RPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPI--- 337
+PP A P A RGA PA A P P PPPPPA ++AP
Sbjct: 100 QPPRRGATPPAPPRAPRGA-PAAAAAAAPPPTPA---------PPPPPAPVAAAAPARAP 149
Query: 338 -------------GEARRGERGDHWLPALGRPGDWLAGLQPAFGVKRSLRKCARGESSAG 384
G A+ G R P P PA R+ +A
Sbjct: 150 RAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPP--APAAPPAVAPPAGPRRAPPPAVAAR 207
Query: 385 ARPLFPGCRGPLTHWKR--------------VVSLGDEALHGVTRARPAVHWPVSPAGMG 430
PL P + P ++ V G A R V + G G
Sbjct: 208 EPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAA--RPVSLREVVRYLGGSGGAG 265
Query: 431 GALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPARGSFPGR 482
G L +G +A L R R PRG G++ PA + P R
Sbjct: 266 GRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDRPGRA-PPAASARPSR 316
Score = 30.8 bits (68), Expect = 3.1
Identities = 47/167 (28%), Positives = 54/167 (32%), Gaps = 41/167 (24%)
Query: 162 RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAA 221
RG A + RGA A A A P A P + AA +A AA
Sbjct: 104 RGATPPAPPRAPRGAPAAAA---AAAPPPTPAPPPPPAPVA------AAAPARAPRAAAA 154
Query: 222 GSQRPQGLGRARHGGLPAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRR 281
+ P G A+ P P+ QR PL A P A
Sbjct: 155 AATAPPSPGPAQ----PGPR-------------AQRAAPLAAPPPAPAA----------- 186
Query: 282 PPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANPPPPP 328
PPA A A RR PA A P P +P A PPPP
Sbjct: 187 PPAVAPP----AGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPP 229
Score = 30.4 bits (67), Expect = 4.0
Identities = 25/73 (34%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 264 QPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFAN 323
QP G R R PAAAA A A P P A + A AR P A A
Sbjct: 100 QPPRRGATPPAPPRAPRGAPAAAAAA---APPPTPAPPPPPAPVAAAAPARAPRAAAAAA 156
Query: 324 PPPPPAGCGSSAP 336
PP G P
Sbjct: 157 TAPPSPGPAQPGP 169
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,378,989
Number of Sequences: 37866
Number of extensions: 1504671
Number of successful extensions: 9543
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 700
Number of HSP's that attempted gapping in prelim test: 8046
Number of HSP's gapped (non-prelim): 1899
length of query: 513
length of database: 18,247,518
effective HSP length: 107
effective length of query: 406
effective length of database: 14,195,856
effective search space: 5763517536
effective search space used: 5763517536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.