Guide to the Human Genome
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Name: LOC100291252 Sequence: fasta or formatted (513aa) NCBI GI: 239750970
Description:

PREDICTED: hypothetical protein XP_002347634

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.6         85           4
 C cysteine            1.2          6           1
 D aspartate           1.8          9           1
 E glutamate           3.1         16           1
 F phenylalanine       1.6          8           1
 G glycine            13.8         71           2
 H histidine           4.1         21           3
 I isoleucine          0.8          4           1
 K lysine              1.8          9           1
 L leucine             8.6         44           2
 M methionine          1.6          8           2
 N asparagine          0.6          3           1
 P proline             9.7         50           5
 Q glutamine           5.7         29           2
 R arginine           12.3         63           3
 S serine              4.7         24           2
 T threonine           2.9         15           1
 V valine              7.0         36           2
 W tryptophan          1.9         10           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347634 
LOC100293327          1.000   PREDICTED: hypothetical protein 
LOC100287254          1.000   PREDICTED: hypothetical protein XP_002343484 
COL1A2                0.030   alpha 2 type I collagen 
TAF4                  0.024   TBP-associated factor 4 
COL24A1               0.023   collagen, type XXIV, alpha 1 
COL5A2                0.020   alpha 2 type V collagen preproprotein 
LOC100290946          0.020   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.020   PREDICTED: hypothetical protein XP_002344246 
C2orf55               0.020   hypothetical protein LOC343990 
COL2A1                0.020   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.020   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A1                0.019   alpha 1 type I collagen preproprotein 
FLJ22184              0.019   PREDICTED: hypothetical protein LOC80164 
COL11A2               0.019   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.019   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.019   collagen, type XI, alpha 2 isoform 1 preproprotein ...
BHLHE41               0.019   basic helix-loop-helix domain containing, class B, 3...
LOC100291129          0.018   PREDICTED: hypothetical protein XP_002347815 
LOC728767             0.018   PREDICTED: hypothetical protein 
LOC728767             0.018   PREDICTED: hypothetical protein 
DACT3                 0.018   thymus expressed gene 3-like 
LOC728317             0.018   PREDICTED: hypothetical protein 
LOC728317             0.018   PREDICTED: hypothetical protein 
LOC728317             0.018   PREDICTED: hypothetical protein 
LOC728307             0.018   PREDICTED: hypothetical protein 
SOX1                  0.017   SRY (sex determining region Y)-box 1 
LOC100293375          0.017   PREDICTED: hypothetical protein 
LOC100291076          0.017   PREDICTED: hypothetical protein XP_002347846 
SAMD1                 0.017   sterile alpha motif domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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