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Search of human proteins with 239750612
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750612 PREDICTED: hypothetical protein [Homo sapiens]
(174 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756083 PREDICTED: hypothetical protein [Homo sapiens] 363 e-101
gi|239750612 PREDICTED: hypothetical protein [Homo sapiens] 363 e-101
gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo ... 363 e-101
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 49 2e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 49 2e-06
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 47 6e-06
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 47 1e-05
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 46 2e-05
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 46 2e-05
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 45 2e-05
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 45 2e-05
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 45 2e-05
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 45 3e-05
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 45 3e-05
gi|50345997 E1A binding protein p300 [Homo sapiens] 45 4e-05
gi|119220552 sidekick 1 [Homo sapiens] 44 5e-05
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 44 9e-05
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 44 9e-05
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 44 9e-05
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 44 9e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 43 1e-04
gi|147903292 nuclear localized factor 1 [Homo sapiens] 43 1e-04
gi|153792074 proline rich 12 [Homo sapiens] 43 2e-04
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 42 3e-04
gi|4507917 WEE1 tyrosine kinase isoform 1 [Homo sapiens] 42 3e-04
gi|153251245 hypothetical protein LOC55150 [Homo sapiens] 42 3e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 42 3e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 42 4e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 42 4e-04
>gi|239756083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 363 bits (933), Expect = e-101
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MIPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL 60
MIPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL
Sbjct: 1 MIPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL 60
Query: 61 ARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP 120
ARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP
Sbjct: 61 ARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP 120
Query: 121 RAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAGRSPC 174
RAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAGRSPC
Sbjct: 121 RAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAGRSPC 174
>gi|239750612 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 363 bits (933), Expect = e-101
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MIPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL 60
MIPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL
Sbjct: 1 MIPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL 60
Query: 61 ARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP 120
ARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP
Sbjct: 61 ARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP 120
Query: 121 RAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAGRSPC 174
RAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAGRSPC
Sbjct: 121 RAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAGRSPC 174
>gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo
sapiens]
Length = 174
Score = 363 bits (933), Expect = e-101
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MIPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL 60
MIPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL
Sbjct: 1 MIPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL 60
Query: 61 ARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP 120
ARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP
Sbjct: 61 ARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTP 120
Query: 121 RAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAGRSPC 174
RAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAGRSPC
Sbjct: 121 RAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAGRSPC 174
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 48.9 bits (115), Expect = 2e-06
Identities = 59/203 (29%), Positives = 76/203 (37%), Gaps = 36/203 (17%)
Query: 3 PVGSSPPWPLAPASGPGRP--PERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL 60
P + PP P+ PA GPG P P K P A+ P +G R G A
Sbjct: 350 PGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTG--ARGPEGAQGPRGEPGTPGSPGPAGAS 407
Query: 61 ARPGT-GRPRRSPRSRSQSVVRVAPPVSPRAPP------LPLRPRLEL------------ 101
PGT G P + + + PR PP PL P+ +
Sbjct: 408 GNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ 467
Query: 102 --QGCPGPGDTSG-----GFPGSRTPRAAERTIG----PGRRGAPGRRTGPLRENSLPVL 150
+G PGP G G G R R +G PG RGAPG R P ++ L
Sbjct: 468 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP-GQDGLAGP 526
Query: 151 RPGVGQTGTAPLARGSRGAGRSP 173
+ G+ G + LA G +GA P
Sbjct: 527 KGAPGERGPSGLA-GPKGANGDP 548
Score = 34.3 bits (77), Expect = 0.056
Identities = 50/187 (26%), Positives = 59/187 (31%), Gaps = 34/187 (18%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR 62
P PP PA G+ +R + A P RG++ P G+
Sbjct: 1067 PGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQ---GPQGPRGDKGEAGE 1123
Query: 63 PGT-------------GRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRP--RLELQGCPGP 107
PG G P S Q A P PR PP P+ P + G PGP
Sbjct: 1124 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGP 1183
Query: 108 GDTSGGFPGSRTPRAAERTIG-PGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGS 166
G PG R G PG G PG P PG G +A G
Sbjct: 1184 ----IGPPGPRGRSGETGPAGPPGNPGPPG-----------PPGPPGPGIDMSAFAGLGP 1228
Query: 167 RGAGRSP 173
R G P
Sbjct: 1229 REKGPDP 1235
Score = 33.1 bits (74), Expect = 0.12
Identities = 55/205 (26%), Positives = 66/205 (32%), Gaps = 53/205 (25%)
Query: 9 PWPLAPASGP-------GRPPERKDLVAPPDPTA-------QSPRVLRGLRLLAHRCPPS 54
P LA ASG G P + KD+V P P Q PR RG + P
Sbjct: 90 PTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPR 149
Query: 55 GEAKLLARPGTGRPRRSP-----------------------RSRSQSVVRVAP--PVSPR 89
G PG P P +Q V P P+ PR
Sbjct: 150 GRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPR 209
Query: 90 APPLPLRPRLELQGCPGPGDTSGGFPGSRTPRAAERTIGP-GRRGAPGRRTGPLRENSLP 148
PP P G PGP GF G+ GP G RG PG P +
Sbjct: 210 GPPGP-------AGAPGP----QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG 258
Query: 149 VLRPGVGQTGTAPLARGSRGAGRSP 173
+PG P +G+RG +P
Sbjct: 259 --KPGKAGERGPPGPQGARGFPGTP 281
Score = 32.3 bits (72), Expect = 0.21
Identities = 53/204 (25%), Positives = 66/204 (32%), Gaps = 49/204 (24%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLR----------LLAHRCP 52
P S P P P PG+P + + P + P +G R + HR
Sbjct: 233 PGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGY 292
Query: 53 P-----------------SGEAKLLARPGTGRPRRSPRSRSQSVVRVAPPV-------SP 88
P SG PG PR P R ++ A P
Sbjct: 293 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP 352
Query: 89 RAPPLPLRPRLELQGCPGPGDTSG--GFPGSRTPRAAERTIG-PGRRGAPGRRTGPLREN 145
PP P+ P G PG G G G+R P A+ G PG G+PG
Sbjct: 353 AGPPGPVGP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG--------- 402
Query: 146 SLPVLRPGVGQTGTAPLARGSRGA 169
P G T P A+GS GA
Sbjct: 403 --PAGASGNPGTDGIPGAKGSAGA 424
Score = 32.3 bits (72), Expect = 0.21
Identities = 49/187 (26%), Positives = 61/187 (32%), Gaps = 44/187 (23%)
Query: 15 ASGPGRPPERKDLVAPPDPTAQS----PRVLRGLRLLAHRCPPSGEAKLLARPGTGRPRR 70
A+G PP PP P S P+ RG SG PG P
Sbjct: 901 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG---------DSGPPGRAGEPGLQGPAG 951
Query: 71 SPRSRSQSVVRVAPPVSPRAPPLPL--------------RPRLELQGCPGPGDTSG--GF 114
P + + P PP P R G PGP G G
Sbjct: 952 PPGEKGEP--GDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGA 1009
Query: 115 PGSRTPRAAERTIGP----------GRRGAPGRRTGPLRENSLPVLRPGVGQTGT--APL 162
PG+ R +GP GR G+PG P R+ + V + G+TG AP
Sbjct: 1010 PGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGV-KGDRGETGAVGAPG 1068
Query: 163 ARGSRGA 169
A G G+
Sbjct: 1069 APGPPGS 1075
Score = 28.5 bits (62), Expect = 3.1
Identities = 45/169 (26%), Positives = 53/169 (31%), Gaps = 20/169 (11%)
Query: 9 PWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGRP 68
P P P PG E A +P P G R G + G P
Sbjct: 473 PGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGER------GAPGNRGFPGQDGLAGP 526
Query: 69 RRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLE----LQGCPGPGDTSGGFPGSRTPRAAE 124
+ +P R S + P + P P P L L G PG G S P
Sbjct: 527 KGAPGERGPSGL-AGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDG 585
Query: 125 RTIGPGRRGAPGRR-----TGPLRENSLPVLRPGVGQTGTAPLARGSRG 168
R PG +GA G+ GP N PG P A G RG
Sbjct: 586 RPGPPGPQGARGQPGVMGFPGPKGANG----EPGKAGEKGLPGAPGLRG 630
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 48.9 bits (115), Expect = 2e-06
Identities = 59/203 (29%), Positives = 76/203 (37%), Gaps = 36/203 (17%)
Query: 3 PVGSSPPWPLAPASGPGRP--PERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL 60
P + PP P+ PA GPG P P K P A+ P +G R G A
Sbjct: 281 PGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTG--ARGPEGAQGPRGEPGTPGSPGPAGAS 338
Query: 61 ARPGT-GRPRRSPRSRSQSVVRVAPPVSPRAPP------LPLRPRLEL------------ 101
PGT G P + + + PR PP PL P+ +
Sbjct: 339 GNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ 398
Query: 102 --QGCPGPGDTSG-----GFPGSRTPRAAERTIG----PGRRGAPGRRTGPLRENSLPVL 150
+G PGP G G G R R +G PG RGAPG R P ++ L
Sbjct: 399 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP-GQDGLAGP 457
Query: 151 RPGVGQTGTAPLARGSRGAGRSP 173
+ G+ G + LA G +GA P
Sbjct: 458 KGAPGERGPSGLA-GPKGANGDP 479
Score = 34.3 bits (77), Expect = 0.056
Identities = 50/187 (26%), Positives = 59/187 (31%), Gaps = 34/187 (18%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR 62
P PP PA G+ +R + A P RG++ P G+
Sbjct: 998 PGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQ---GPQGPRGDKGEAGE 1054
Query: 63 PGT-------------GRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRP--RLELQGCPGP 107
PG G P S Q A P PR PP P+ P + G PGP
Sbjct: 1055 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGP 1114
Query: 108 GDTSGGFPGSRTPRAAERTIG-PGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGS 166
G PG R G PG G PG P PG G +A G
Sbjct: 1115 ----IGPPGPRGRSGETGPAGPPGNPGPPG-----------PPGPPGPGIDMSAFAGLGP 1159
Query: 167 RGAGRSP 173
R G P
Sbjct: 1160 REKGPDP 1166
Score = 32.3 bits (72), Expect = 0.21
Identities = 53/204 (25%), Positives = 66/204 (32%), Gaps = 49/204 (24%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLR----------LLAHRCP 52
P S P P P PG+P + + P + P +G R + HR
Sbjct: 164 PGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGY 223
Query: 53 P-----------------SGEAKLLARPGTGRPRRSPRSRSQSVVRVAPPV-------SP 88
P SG PG PR P R ++ A P
Sbjct: 224 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP 283
Query: 89 RAPPLPLRPRLELQGCPGPGDTSG--GFPGSRTPRAAERTIG-PGRRGAPGRRTGPLREN 145
PP P+ P G PG G G G+R P A+ G PG G+PG
Sbjct: 284 AGPPGPVGP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG--------- 333
Query: 146 SLPVLRPGVGQTGTAPLARGSRGA 169
P G T P A+GS GA
Sbjct: 334 --PAGASGNPGTDGIPGAKGSAGA 355
Score = 32.3 bits (72), Expect = 0.21
Identities = 49/187 (26%), Positives = 61/187 (32%), Gaps = 44/187 (23%)
Query: 15 ASGPGRPPERKDLVAPPDPTAQS----PRVLRGLRLLAHRCPPSGEAKLLARPGTGRPRR 70
A+G PP PP P S P+ RG SG PG P
Sbjct: 832 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG---------DSGPPGRAGEPGLQGPAG 882
Query: 71 SPRSRSQSVVRVAPPVSPRAPPLPL--------------RPRLELQGCPGPGDTSG--GF 114
P + + P PP P R G PGP G G
Sbjct: 883 PPGEKGEP--GDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGA 940
Query: 115 PGSRTPRAAERTIGP----------GRRGAPGRRTGPLRENSLPVLRPGVGQTGT--APL 162
PG+ R +GP GR G+PG P R+ + V + G+TG AP
Sbjct: 941 PGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGV-KGDRGETGAVGAPG 999
Query: 163 ARGSRGA 169
A G G+
Sbjct: 1000 APGPPGS 1006
Score = 28.5 bits (62), Expect = 3.1
Identities = 45/169 (26%), Positives = 53/169 (31%), Gaps = 20/169 (11%)
Query: 9 PWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGRP 68
P P P PG E A +P P G R G + G P
Sbjct: 404 PGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGER------GAPGNRGFPGQDGLAGP 457
Query: 69 RRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLE----LQGCPGPGDTSGGFPGSRTPRAAE 124
+ +P R S + P + P P P L L G PG G S P
Sbjct: 458 KGAPGERGPSGL-AGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDG 516
Query: 125 RTIGPGRRGAPGRR-----TGPLRENSLPVLRPGVGQTGTAPLARGSRG 168
R PG +GA G+ GP N PG P A G RG
Sbjct: 517 RPGPPGPQGARGQPGVMGFPGPKGANG----EPGKAGEKGLPGAPGLRG 561
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 47.4 bits (111), Expect = 6e-06
Identities = 56/182 (30%), Positives = 69/182 (37%), Gaps = 16/182 (8%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVA----PPDPTAQSPRVLRGLRLLAHRCPPSGEAK 58
P PP P+A A+ P R P A P P PR R L A PP+ A
Sbjct: 131 PAPPPPPAPVA-AAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAP--PPAPAAP 187
Query: 59 LLARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDT--SGGFPG 116
P G R P + + + PP P APP +P P G +GG
Sbjct: 188 PAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAAR 247
Query: 117 SRTPRAAERTIGPGRRGAPGRRT-----GPLRENSLPVLRPGVGQTGTAPLARGSRGAGR 171
+ R R +G G GA GR T G L E + R + G L RG R GR
Sbjct: 248 PVSLREVVRYLG-GSGGAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDR-PGR 305
Query: 172 SP 173
+P
Sbjct: 306 AP 307
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 46.6 bits (109), Expect = 1e-05
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 66 GRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGP------GDTSGGFPGSRT 119
G R+P +R+ ++ PP SPR PP L + G G + +GG G+
Sbjct: 11 GAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATI 70
Query: 120 PRAAERTIGPGRRGAP-----GRRTGPLRENSL-PVLRPGVGQTGTAPLARGSRG 168
P +A R GP R P G R P + S PV PG T P G +G
Sbjct: 71 PESAPRA-GPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKG 124
Score = 40.0 bits (92), Expect = 0.001
Identities = 55/180 (30%), Positives = 66/180 (36%), Gaps = 26/180 (14%)
Query: 3 PVGSSPPW---PLAPASGPGRPPERKDLVAPPDPTA----QSPRVLRGLRLLAHRCPPSG 55
P ++PP P PAS PG+ P P P A Q+P VL L PP
Sbjct: 482 PALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPP-- 539
Query: 56 EAKLLARPGTGRPRRSPR---SRSQSVVRVAPPVSPRAPPLPLR-PRLELQGCPGPGDTS 111
A P PRR P S S R+ ++P PP P R P L G G +S
Sbjct: 540 -----ASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSS 594
Query: 112 GGFPGSRTPRAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAP--LARGSRGA 169
+ TP R G G G P + L P G AP RG+ GA
Sbjct: 595 S---ATSTPEEL-RGYDSGPEG--GAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGA 648
Score = 36.2 bits (82), Expect = 0.015
Identities = 54/221 (24%), Positives = 68/221 (30%), Gaps = 57/221 (25%)
Query: 5 GSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR-- 62
G P + GP P R P P Q +GLR+ A G+A +
Sbjct: 91 GERAPPAKNTSPGPVSSPGRASGTTRPGPLGQ-----KGLRISAEETVARGKATEAPKRS 145
Query: 63 --------------PGTGRPRRSPRSRSQ----SVVRVAPPVSPRAP------------- 91
PGT P + RSR+ + R AP PR P
Sbjct: 146 ALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASE 205
Query: 92 -----PLPLRPRLELQGCPGPGDTSGGFPGSRTPRAAERTIGPGRRGAPGRRTGPL--RE 144
P P R G S S TP ++ GP RG P P +
Sbjct: 206 HSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKP 265
Query: 145 NSLPVLR------------PGVGQTGTAPLARGSRGAGRSP 173
L LR P +G ++PLA S A SP
Sbjct: 266 KGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSP 306
Score = 35.4 bits (80), Expect = 0.025
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPP--------- 53
P + P L P P PP L P+ Q+P L L A PP
Sbjct: 354 PPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPF 413
Query: 54 SGEAKLLARPGTGRPRRSPRSRSQSVVRV------APPVSPRAPPLPLRP 97
S A P P ++P S + ++V +PP+SP A P P P
Sbjct: 414 SPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP 463
Score = 34.7 bits (78), Expect = 0.043
Identities = 39/139 (28%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 3 PVGSSPPWPLAPA-SGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKL-- 59
P +PP AP P PP + P Q+P L L + PP L
Sbjct: 427 PPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALAT 486
Query: 60 -----LARPGTGRPRRSPRSRSQSVVR---VAPPVSPRAPPLPLRPRLELQGCPGPGDTS 111
L P P ++P S S S+ PP P+APP+ P L++ P
Sbjct: 487 PPLQALPSPPASFPGQAPFSPSASLPMSPLATPP--PQAPPVLAAPLLQVPPSP------ 538
Query: 112 GGFPGSRTPRAAERTIGPG 130
P S T +A R PG
Sbjct: 539 ---PASPTLQAPRRPPTPG 554
Score = 32.0 bits (71), Expect = 0.28
Identities = 53/212 (25%), Positives = 72/212 (33%), Gaps = 46/212 (21%)
Query: 5 GSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLR-----GLRLLAHRC-------- 51
G++ P A A G P PP T + RVL G + LA R
Sbjct: 11 GAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATI 70
Query: 52 ----PPSGEAKLLARPGTGRPRRSPRSRSQSVVRVAPP--VSPRAPPLPL---------- 95
P +G + P +GR R+P +++ S V+ P S P PL
Sbjct: 71 PESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAE 130
Query: 96 ----------RPRLELQGCPGPGDTSGGFPGSRTPRAAERTIGPGR-----RGAPGRRTG 140
P+ DTSG PG+ +P A R+ G R AP R
Sbjct: 131 ETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPR 190
Query: 141 PLRENSLPVLRPGVGQTGT--APLARGSRGAG 170
P E + + T +P AR AG
Sbjct: 191 PPTEGPRKSVSSASEHSTTEPSPAARRRPSAG 222
Score = 29.6 bits (65), Expect = 1.4
Identities = 33/112 (29%), Positives = 40/112 (35%), Gaps = 35/112 (31%)
Query: 3 PVGSSP---PWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKL 59
P+ SSP P P AP S P PP + L +PP PPS
Sbjct: 289 PLSSSPLATPSPSAPPS-PSAPPSLQTLPSPP------------------ATPPSQATTS 329
Query: 60 LARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRL----ELQGCPGP 107
L SP ++ +PP+SP A P P P LQ P P
Sbjct: 330 LG---------SPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSP 372
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 45.8 bits (107), Expect = 2e-05
Identities = 46/149 (30%), Positives = 52/149 (34%), Gaps = 30/149 (20%)
Query: 30 PPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR---PGTGRPRRSPRSRSQSVVRVAPPV 86
PP P A +R +L + PP ++LL R P R R SP R PP
Sbjct: 46 PPAPPAPGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPER-----ARPPPPP 100
Query: 87 SPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRT---------------PRAAERTIG--- 128
P APP P PGP G PG+R PR R G
Sbjct: 101 PPPAPPRPPPAAPSPPAAPGPRG-GGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGARL 159
Query: 129 -PGRRGAPGRRTGPLRENSLPVLRPGVGQ 156
AP R GP N L PG GQ
Sbjct: 160 LSNGHSAPEPRAGP--ANRLAGSPPGSGQ 186
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 45.8 bits (107), Expect = 2e-05
Identities = 46/149 (30%), Positives = 52/149 (34%), Gaps = 30/149 (20%)
Query: 30 PPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR---PGTGRPRRSPRSRSQSVVRVAPPV 86
PP P A +R +L + PP ++LL R P R R SP R PP
Sbjct: 46 PPAPPAPGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPER-----ARPPPPP 100
Query: 87 SPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRT---------------PRAAERTIG--- 128
P APP P PGP G PG+R PR R G
Sbjct: 101 PPPAPPRPPPAAPSPPAAPGPRG-GGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGARL 159
Query: 129 -PGRRGAPGRRTGPLRENSLPVLRPGVGQ 156
AP R GP N L PG GQ
Sbjct: 160 LSNGHSAPEPRAGP--ANRLAGSPPGSGQ 186
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 45.4 bits (106), Expect = 2e-05
Identities = 50/179 (27%), Positives = 65/179 (36%), Gaps = 40/179 (22%)
Query: 16 SGPGRPPER-KDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGRPRRSPRS 74
SG P R + PP P +SP G PP R +
Sbjct: 70 SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPP----------------RPSQH 113
Query: 75 RSQSVVRVAPP------VSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTPRAAERTIG 128
+S S +R A P S RA P P P+ + PG + G PGSR + +
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGAR 173
Query: 129 PGR-------------RGAPGRRTGPLRENSLPV-LRPGVGQTGTAPLARGSRGAGRSP 173
P R R AP R P R LP+ RPG +GT + G+ G+G P
Sbjct: 174 PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG---SGTGARSCGTWGSGGGP 229
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 45.4 bits (106), Expect = 2e-05
Identities = 50/179 (27%), Positives = 65/179 (36%), Gaps = 40/179 (22%)
Query: 16 SGPGRPPER-KDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGRPRRSPRS 74
SG P R + PP P +SP G PP R +
Sbjct: 70 SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPP----------------RPSQH 113
Query: 75 RSQSVVRVAPP------VSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTPRAAERTIG 128
+S S +R A P S RA P P P+ + PG + G PGSR + +
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGAR 173
Query: 129 PGR-------------RGAPGRRTGPLRENSLPV-LRPGVGQTGTAPLARGSRGAGRSP 173
P R R AP R P R LP+ RPG +GT + G+ G+G P
Sbjct: 174 PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG---SGTGARSCGTWGSGGGP 229
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 45.4 bits (106), Expect = 2e-05
Identities = 50/179 (27%), Positives = 65/179 (36%), Gaps = 40/179 (22%)
Query: 16 SGPGRPPER-KDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGRPRRSPRS 74
SG P R + PP P +SP G PP R +
Sbjct: 70 SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPP----------------RPSQH 113
Query: 75 RSQSVVRVAPP------VSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTPRAAERTIG 128
+S S +R A P S RA P P P+ + PG + G PGSR + +
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGAR 173
Query: 129 PGR-------------RGAPGRRTGPLRENSLPV-LRPGVGQTGTAPLARGSRGAGRSP 173
P R R AP R P R LP+ RPG +GT + G+ G+G P
Sbjct: 174 PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG---SGTGARSCGTWGSGGGP 229
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 45.4 bits (106), Expect = 2e-05
Identities = 50/162 (30%), Positives = 55/162 (33%), Gaps = 15/162 (9%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR 62
P PP P+ P G E+ D P DP RGLR P GE
Sbjct: 1618 PGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGD 1677
Query: 63 PGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTPRA 122
PG SP S + P R P P P L GPG G PG R
Sbjct: 1678 PGEDGRNGSPGS--------SGPKGDRGEPGPPGPPGRLVD-TGPGAREKGEPGDRGQEG 1728
Query: 123 AERTIG-PGRRGAPGRR-----TGPLRENSLPVLRPGVGQTG 158
G PG GAPG R GP P +R G+ G
Sbjct: 1729 PRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKG 1770
Score = 36.2 bits (82), Expect = 0.015
Identities = 55/188 (29%), Positives = 70/188 (37%), Gaps = 36/188 (19%)
Query: 3 PVGS--SPPWPLAPA-SGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKL 59
PVG P P AP +GP P L P T R L G P G + L
Sbjct: 2178 PVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGL 2237
Query: 60 LARPG----------TGRPRRSPR--SRSQSVVRVAPPVSPRAP--PLPLRPRLELQGCP 105
+ G TG+P R + + R +P V P +P P P+ P+ E
Sbjct: 2238 VGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGV-PGSPGLPGPVGPKGEPGPTG 2296
Query: 106 GPGDTSGGFPGSRTPRAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARG 165
PG G PG++ G +GAPG G L V PG P RG
Sbjct: 2297 APGQAVVGLPGAK-----------GEKGAPGGLAGDL------VGEPGAKGDRGLPGPRG 2339
Query: 166 SRG-AGRS 172
+G AGR+
Sbjct: 2340 EKGEAGRA 2347
Score = 30.0 bits (66), Expect = 1.1
Identities = 31/89 (34%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 53 PSGEAKLLARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPP-LPLRPRLELQGCPGPGDTS 111
P G++ PG P P R R P P+ PP L L R G PGP +
Sbjct: 1980 PKGDSGEQGPPGKEGPIGFPGERGLKGDRGDP--GPQGPPGLALGER----GPPGPSGLA 2033
Query: 112 G--GFPGSRTPRAAERTIGPGRRGAPGRR 138
G G PG P R G G G PG R
Sbjct: 2034 GEPGKPG--IPGLPGRAGGVGEAGRPGER 2060
Score = 28.9 bits (63), Expect = 2.3
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 88 PRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTPRAAERTIGPGRRGAPGRRTGPLRENSL 147
PR P P+ +G PG G P RT PG +G PG T E
Sbjct: 1242 PRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAK-GERGF 1300
Query: 148 PVL--RPG----VGQTGT--APLARGSRG 168
P RPG G GT AP +GS G
Sbjct: 1301 PGADGRPGSPGRAGNPGTPGAPGLKGSPG 1329
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 45.1 bits (105), Expect = 3e-05
Identities = 60/197 (30%), Positives = 71/197 (36%), Gaps = 31/197 (15%)
Query: 1 MIPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL 60
M P GS P AP PG P L PP PR R L+ P G+A+
Sbjct: 675 MYPQGS--PSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGE 732
Query: 61 ARPGTG-----------RPRRSPRSR-SQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPG 108
A G RP RS R S SV +PR+ LR R + P P
Sbjct: 733 AEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPK 792
Query: 109 DTSGGFPGSRTPRAAERTIGPGRRGAPGRRTGPLRENSLPVLRPG--------------- 153
S S P + + GP + GA G R L E + P PG
Sbjct: 793 RLSSVSGPSPEPPPLDESPGP-KEGATGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEE 851
Query: 154 VGQTGTAPLARGSRGAG 170
G GT P +RGS G G
Sbjct: 852 PGPEGTPP-SRGSSGEG 867
Score = 42.7 bits (99), Expect = 2e-04
Identities = 43/149 (28%), Positives = 56/149 (37%), Gaps = 12/149 (8%)
Query: 3 PVGSSPPWP---LAPASGPGRPPERKDLVAPPDPTAQSPRVLRGL--RLLAHRCPPSGEA 57
P SS P P PA G P + PP P P + R PP+ A
Sbjct: 949 PPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCPGPGLESSAASRWNGETEPPAAPA 1008
Query: 58 KLLARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPL-RPRLELQGCPGPGDTSGGFPG 116
LL PG G + + P ++PR P P+ PR E G GPG
Sbjct: 1009 ALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRLGPRPVPPPRPESTGTVGPGQAQQRLEQ 1068
Query: 117 SRTP-----RAAERTIG-PGRRGAPGRRT 139
+ + RAAE++IG + G P T
Sbjct: 1069 TSSSLAAALRAAEKSIGTKEQEGTPSAST 1097
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 45.1 bits (105), Expect = 3e-05
Identities = 60/197 (30%), Positives = 71/197 (36%), Gaps = 31/197 (15%)
Query: 1 MIPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL 60
M P GS P AP PG P L PP PR R L+ P G+A+
Sbjct: 757 MYPQGS--PSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGE 814
Query: 61 ARPGTG-----------RPRRSPRSR-SQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPG 108
A G RP RS R S SV +PR+ LR R + P P
Sbjct: 815 AEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPK 874
Query: 109 DTSGGFPGSRTPRAAERTIGPGRRGAPGRRTGPLRENSLPVLRPG--------------- 153
S S P + + GP + GA G R L E + P PG
Sbjct: 875 RLSSVSGPSPEPPPLDESPGP-KEGATGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEE 933
Query: 154 VGQTGTAPLARGSRGAG 170
G GT P +RGS G G
Sbjct: 934 PGPEGTPP-SRGSSGEG 949
Score = 42.7 bits (99), Expect = 2e-04
Identities = 43/149 (28%), Positives = 56/149 (37%), Gaps = 12/149 (8%)
Query: 3 PVGSSPPWP---LAPASGPGRPPERKDLVAPPDPTAQSPRVLRGL--RLLAHRCPPSGEA 57
P SS P P PA G P + PP P P + R PP+ A
Sbjct: 1031 PPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCPGPGLESSAASRWNGETEPPAAPA 1090
Query: 58 KLLARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPL-RPRLELQGCPGPGDTSGGFPG 116
LL PG G + + P ++PR P P+ PR E G GPG
Sbjct: 1091 ALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRLGPRPVPPPRPESTGTVGPGQAQQRLEQ 1150
Query: 117 SRTP-----RAAERTIG-PGRRGAPGRRT 139
+ + RAAE++IG + G P T
Sbjct: 1151 TSSSLAAALRAAEKSIGTKEQEGTPSAST 1179
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 44.7 bits (104), Expect = 4e-05
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR 62
PV + P P P S PP R+ P PT Q P+ ++ PS L A
Sbjct: 862 PVPTPPAMPPGPQSQALHPPPRQ---TPTPPTTQLPQQVQ----------PS----LPAA 904
Query: 63 PGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRP 97
P +P++ PRS+ + V P +P PP P P
Sbjct: 905 PSADQPQQQPRSQQSTAASVPTPTAPLLPPQPATP 939
Score = 35.0 bits (79), Expect = 0.033
Identities = 53/191 (27%), Positives = 73/191 (38%), Gaps = 51/191 (26%)
Query: 3 PVGSSPPW-PLAPASGPGRPPERKDLVAPPDP--TAQSPRVLRGLRLLAHRCPPSGEAKL 59
P S PP+ P A+GP + V PP P TAQ P L G PP ++
Sbjct: 1879 PPNSMPPYLPRTQAAGPVSQGKAAGQVTPPTPPQTAQPP--LPG--------PPPAAVEM 1928
Query: 60 LAR----PGTGRPRRSPRSRSQSVVRVAPPVSPRAP------PLPLRPRLELQGCPGPGD 109
+ T R + + + PP++P AP P+ P L+ PG G
Sbjct: 1929 AMQIQRAAETQRQMAHVQIFQRPIQHQMPPMTPMAPMGMNPPPMTRGPSGHLE--PGMGP 1986
Query: 110 TS---------GGFPG-----SRTPRAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVG 155
T GG P S PR A ++ + G P N P +PG+G
Sbjct: 1987 TGMQQQPPWSQGGLPQPQQLQSGMPRPAMMSVA--QHGQP--------LNMAP--QPGLG 2034
Query: 156 QTGTAPLARGS 166
Q G +PL G+
Sbjct: 2035 QVGISPLKPGT 2045
>gi|119220552 sidekick 1 [Homo sapiens]
Length = 2213
Score = 44.3 bits (103), Expect = 5e-05
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 13/80 (16%)
Query: 55 GEAKLLARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSG-G 113
G A+ R G GRPR SP R++ P ++PR P P RPR + GDT+G G
Sbjct: 15 GGAEPPERAGPGRPRGSPPGRAR------PSLAPRPGPEPSRPRAAPE--TSGGDTAGAG 66
Query: 114 FPGSRTPRAAERTIGPGRRG 133
G R RAA+ +GPGRRG
Sbjct: 67 RCGGR--RAAK--LGPGRRG 82
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 43.5 bits (101), Expect = 9e-05
Identities = 45/153 (29%), Positives = 57/153 (37%), Gaps = 21/153 (13%)
Query: 7 SPPWPLAPAS----GPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR 62
SP +P P G P K PP P P ++ G P GE
Sbjct: 300 SPGFPGEPGYPGLIGRQGPQGEKGEAGPPGP----PGIVIGTG-------PLGEKGERGY 348
Query: 63 PGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSG--GFPGSRTP 120
PGT PR P + + P P P LP+ + G PG G GFPG+ P
Sbjct: 349 PGTPGPRGEPGPKGFPGL----PGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLP 404
Query: 121 RAAERTIGPGRRGAPGRRTGPLRENSLPVLRPG 153
+ R PG G+PG P N + +PG
Sbjct: 405 GPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPG 437
Score = 30.0 bits (66), Expect = 1.1
Identities = 41/146 (28%), Positives = 57/146 (39%), Gaps = 17/146 (11%)
Query: 17 GPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGT-GRPRRSPRSR 75
GP PP ++ P P A+ R L G +A P G L+ +PG G P
Sbjct: 480 GPQGPPG--EIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEP------- 530
Query: 76 SQSVVRVAPPVSPRAPPLPLRPRLE-LQGCPGPGDTSGGFPGSRTPRAAERTIG-PGRRG 133
+ + P P +P + G PG G PG P+ + ++G G RG
Sbjct: 531 GEFYFDLRLKGDKGDPGFPGQPGMTGRAGSPG----RDGHPGLPGPKGSPGSVGLKGERG 586
Query: 134 APGRRTGP-LRENSLPVLRPGVGQTG 158
PG P R ++ P PG G G
Sbjct: 587 PPGGVGFPGSRGDTGPPGPPGYGPAG 612
Score = 27.3 bits (59), Expect = 6.8
Identities = 42/154 (27%), Positives = 60/154 (38%), Gaps = 25/154 (16%)
Query: 9 PWPLAPASGPGRPPERKDLVAPPDPTAQ------SPRVLRGLRLLAHRCPPSGEAKLLAR 62
P P PG ++ D+ P P + S + +G + + P GE
Sbjct: 911 PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 970
Query: 63 PGT-GRPRRSPRSRS--QSVVRVAPPVS--PRAPPLPLRPR-----LELQGCPG------ 106
PGT G P + ++ Q + P +S P AP LP P+ + L G PG
Sbjct: 971 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP-GPKGSVGGMGLPGTPGEKGVPG 1029
Query: 107 -PGDT-SGGFPGSRTPRAAERTIGPGRRGAPGRR 138
PG S G PG + + + GP G PG R
Sbjct: 1030 IPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLR 1063
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 43.5 bits (101), Expect = 9e-05
Identities = 54/177 (30%), Positives = 69/177 (38%), Gaps = 34/177 (19%)
Query: 4 VGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARP 63
+G+ P P S GRP + L P + A +P+ PP ARP
Sbjct: 177 LGNKPTPPRQEGSFGGRPKSQPPL--PQETAAPAPQP-------GPTAPP-------ARP 220
Query: 64 GTGRPRRSPRSRSQSVVRVAPPVSPRAPPLP------LRPRLELQGCPGPGDTSGGFPGS 117
R PR R++S R + P P PLP P EL+ PG T+G P
Sbjct: 221 PAYESREGPRGRAES--RGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRP 278
Query: 118 RTPRAAER----TIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAG 170
R P+AAE T+G RRG R +S P G G+ R RG G
Sbjct: 279 REPQAAEESGCATVGL-RRGDCDR-----AGSSQPPATSGNGERCRFCRRRRRRGGG 329
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 43.5 bits (101), Expect = 9e-05
Identities = 54/177 (30%), Positives = 69/177 (38%), Gaps = 34/177 (19%)
Query: 4 VGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARP 63
+G+ P P S GRP + L P + A +P+ PP ARP
Sbjct: 177 LGNKPTPPRQEGSFGGRPKSQPPL--PQETAAPAPQP-------GPTAPP-------ARP 220
Query: 64 GTGRPRRSPRSRSQSVVRVAPPVSPRAPPLP------LRPRLELQGCPGPGDTSGGFPGS 117
R PR R++S R + P P PLP P EL+ PG T+G P
Sbjct: 221 PAYESREGPRGRAES--RGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRP 278
Query: 118 RTPRAAER----TIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAG 170
R P+AAE T+G RRG R +S P G G+ R RG G
Sbjct: 279 REPQAAEESGCATVGL-RRGDCDR-----AGSSQPPATSGNGERCRFCRRRRRRGGG 329
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 43.5 bits (101), Expect = 9e-05
Identities = 54/177 (30%), Positives = 69/177 (38%), Gaps = 34/177 (19%)
Query: 4 VGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARP 63
+G+ P P S GRP + L P + A +P+ PP ARP
Sbjct: 177 LGNKPTPPRQEGSFGGRPKSQPPL--PQETAAPAPQP-------GPTAPP-------ARP 220
Query: 64 GTGRPRRSPRSRSQSVVRVAPPVSPRAPPLP------LRPRLELQGCPGPGDTSGGFPGS 117
R PR R++S R + P P PLP P EL+ PG T+G P
Sbjct: 221 PAYESREGPRGRAES--RGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRP 278
Query: 118 RTPRAAER----TIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAG 170
R P+AAE T+G RRG R +S P G G+ R RG G
Sbjct: 279 REPQAAEESGCATVGL-RRGDCDR-----AGSSQPPATSGNGERCRFCRRRRRRGGG 329
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 43.1 bits (100), Expect = 1e-04
Identities = 59/185 (31%), Positives = 75/185 (40%), Gaps = 25/185 (13%)
Query: 8 PPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPG-TG 66
P P+ P G+P ++ + AP P PR G R P G A PG G
Sbjct: 763 PTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGER---GETGPPGPAGFPGAPGQNG 819
Query: 67 RP-----RRSPRSRSQ-SVVRVAPP---VSPRAPPLPLRPRLELQGCPGPGDTSGGFPGS 117
P R +P + + VA P P PP P + E +G PG G + GFPG+
Sbjct: 820 EPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGE-RGSPG-GPGAAGFPGA 877
Query: 118 R----TPRAAERTIGPGRRGAPGR--RTGPLRENSLPVLRPGV-GQTGTA--PLARGSRG 168
R P + PG G+PG+ GP P PGV G G A P +GS G
Sbjct: 878 RGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPG-SPGVSGPKGDAGQPGEKGSPG 936
Query: 169 AGRSP 173
A P
Sbjct: 937 AQGPP 941
Score = 40.0 bits (92), Expect = 0.001
Identities = 54/185 (29%), Positives = 64/185 (34%), Gaps = 31/185 (16%)
Query: 2 IPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLA 61
+P + P P+ P PG P P A R G R + P G
Sbjct: 289 LPGENGAPGPMGPRGAPGERGR------PGLPGAAGARGNDGARGSDGQPGPPGP----- 337
Query: 62 RPGTGRPRRSPRSRSQSVVRVAPPVSP--------RAPPLPLRPRLELQGCPGPGDTSGG 113
PGT SP ++ + V P SP R P P + QG PGP +G
Sbjct: 338 -PGTAGFPGSPGAKGE----VGPAGSPGSNGAPGQRGEPGP-QGHAGAQGPPGPPGINGS 391
Query: 114 FPGSRTPRAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGT-----APLARGSRG 168
G A PG GA G GP N P LR G G+ G P RG RG
Sbjct: 392 PGGKGEMGPAGIPGAPGLMGARGP-PGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERG 450
Query: 169 AGRSP 173
P
Sbjct: 451 EAGIP 455
Score = 33.5 bits (75), Expect = 0.095
Identities = 52/196 (26%), Positives = 61/196 (31%), Gaps = 51/196 (26%)
Query: 8 PPWPLAPASG--PGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGT 65
P P P S PG P + + P P PR G+ + P + PG
Sbjct: 539 PGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGV--MGFPGPKGNDGA----PGK 592
Query: 66 GRPRRSPRSRSQSVVRVAPP-----VSPRAPPLPLRPRLE-----------LQGCPGPGD 109
R P PP P+ PP P P + LQG PG G
Sbjct: 593 NGERGGPGGPGPQ----GPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGG 648
Query: 110 TSG--GFPGSRTPRAAERTIG----------PGRRGAPGRRTGPLRENSLPVLRPGVGQT 157
G G PG P+ G PG RG PG P LR G G
Sbjct: 649 PPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLA-------GAPGLRGGAGPP 701
Query: 158 GTAPLARGSRGAGRSP 173
G G +GA P
Sbjct: 702 G----PEGGKGAAGPP 713
Score = 32.7 bits (73), Expect = 0.16
Identities = 51/160 (31%), Positives = 59/160 (36%), Gaps = 31/160 (19%)
Query: 4 VGSSPPWPLAPASG-PGRPPERKDLVAPPDPTAQSPRVLRGLR-LLAHRC--PPSGEAKL 59
+G S P SG PGRP ER P P + P + G + HR +GE
Sbjct: 221 IGPSGPAGKDGESGRPGRPGERG---LPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGE 277
Query: 60 LARPGTGRPRRSPRSRSQSVVRVAP-PVSPR-APPLPLRPRLE-------------LQGC 104
PG P AP P+ PR AP RP L G
Sbjct: 278 TGAPGLKGENGLPGENG------APGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQ 331
Query: 105 PGPGDTSG--GFPGSRTPRAAERTIG-PGRRGAPGRRTGP 141
PGP G GFPGS + G PG GAPG+R P
Sbjct: 332 PGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEP 371
Score = 31.6 bits (70), Expect = 0.36
Identities = 36/124 (29%), Positives = 43/124 (34%), Gaps = 11/124 (8%)
Query: 17 GPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGRPRRSPRSRS 76
GP P K PP P +GL+ L P GE PG +P +
Sbjct: 621 GPTGPGGDKGDTGPPGP--------QGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPG 672
Query: 77 QSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTPRAAERTIGPGRRGAPG 136
AP R PP L L+G GP GG + P PG +G PG
Sbjct: 673 GKGDAGAP--GERGPP-GLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPG 729
Query: 137 RRTG 140
R G
Sbjct: 730 ERGG 733
Score = 31.2 bits (69), Expect = 0.47
Identities = 51/197 (25%), Positives = 62/197 (31%), Gaps = 50/197 (25%)
Query: 3 PVGSSPPWPLAPA-----------SGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRC 51
P PP P+ PA +GP P P P Q PR +G
Sbjct: 1046 PGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP--QGPRGDKGETGERGAA 1103
Query: 52 PPSGEAKLLARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTS 111
G PG P + Q + P PR P P P PG TS
Sbjct: 1104 GIKGHRGFPGNPGA--PGSPGPAGQQGAIGSPGPAGPRGPVGPSGP-------PGKDGTS 1154
Query: 112 G--------GFPGSRTPRAAERTIG-------PGRRGAPGRRTGPLRENSLPVLRPGVGQ 156
G G G+R R +E + G PG GAPG G GVG
Sbjct: 1155 GHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCG------------GVGA 1202
Query: 157 TGTAPLARGSRGAGRSP 173
A + G + G +P
Sbjct: 1203 AAIAGIG-GEKAGGFAP 1218
Score = 30.4 bits (67), Expect = 0.81
Identities = 39/139 (28%), Positives = 44/139 (31%), Gaps = 25/139 (17%)
Query: 5 GSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPG 64
G+ P PG ER + P P A+ G GE PG
Sbjct: 430 GAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDG---------SPGEPGANGLPG 480
Query: 65 TGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSG--GFPGSRTPRA 122
R +P R P P P P E +G PGP G G PG
Sbjct: 481 AAGERGAPGFRG--------PAGPNGIPGEKGPAGE-RGAPGPAGPRGAAGEPGRDGVPG 531
Query: 123 AERTIGPGRRGAPGRRTGP 141
GPG RG PG GP
Sbjct: 532 -----GPGMRGMPGSPGGP 545
>gi|147903292 nuclear localized factor 1 [Homo sapiens]
Length = 369
Score = 43.1 bits (100), Expect = 1e-04
Identities = 62/189 (32%), Positives = 78/189 (41%), Gaps = 41/189 (21%)
Query: 2 IPVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRL---LAHRCPPSGEAK 58
+P P P AP G RPP+ D A+ PR R LR+ L R +G ++
Sbjct: 150 VPRAPGPATPAAP--GCPRPPQ--------DALARRPRGCRLLRVPDGLLSRALRAGRSR 199
Query: 59 LLARP---GTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFP 115
L R +G + R+ SQS R AP SP + +P RLE + G + G
Sbjct: 200 RLTRVRSVSSGNEDKERRAGSQSPAR-APSTSPPSSRVPFPERLEAE-----GTVALGRA 253
Query: 116 GSRTPRAAERTIGPGR------------RGAPGRRTGPLRENSLPVLRPGVGQTGTAPLA 163
G AAE G GR GAPG R R + VLRP GTA L
Sbjct: 254 GDALRLAAEYCPGTGRLRLRLLRAESPAGGAPGPRAVSCRLSL--VLRP----PGTA-LR 306
Query: 164 RGSRGAGRS 172
+ S GRS
Sbjct: 307 QCSTVVGRS 315
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 42.7 bits (99), Expect = 2e-04
Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 29/165 (17%)
Query: 5 GSSPPWPLAPASGPG----------RPPERKDLVAPPDPTA-QSPRVLRGLRLLAHRCPP 53
GSS P P APA P +PPE+ A P+P A + P +LR + +
Sbjct: 1688 GSSAPPPKAPAPPPKPETPEKTTSEKPPEQTPETAMPEPPAPEKPSLLRPVEKEKEKEKV 1747
Query: 54 S-GEAKLLARPGTG----RPRRSPRSRSQSVVRV--APPVSPRAPPLPLRPRLELQGCPG 106
+ GE L T RP RS + + R+ A P +A P P + + L+ G
Sbjct: 1748 TRGERPLRGERATSGRQTRPERSLATGQPATSRLPKARPTKVKAEPPPKKRKKWLKEAGG 1807
Query: 107 PGDTSGGFPGSRTPRAAERTIGPG-----RRGAPGR--RTGPLRE 144
GG PGS +++ PG R PGR +T +RE
Sbjct: 1808 NATAGGGPPGS----SSDSESSPGAPSEDERAVPGRLLKTRAMRE 1848
Score = 38.9 bits (89), Expect = 0.002
Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 51 CPPSGEAKLLARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDT 110
CPP+ PG PRR R R + + P PR P +RP LE+ GP
Sbjct: 1143 CPPN--------PGPDGPRR--RGRKPTKAKRDGPPRPRGRPR-IRP-LEVPTTAGPASA 1190
Query: 111 SGGFPGSRTPRAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQ 156
S G++ PR R G A G R PL+ + + P G+
Sbjct: 1191 STPTDGAKKPRGRGRGRGRKAEEAGGTRLEPLKPLKIKLSVPKAGE 1236
Score = 34.7 bits (78), Expect = 0.043
Identities = 51/180 (28%), Positives = 59/180 (32%), Gaps = 54/180 (30%)
Query: 6 SSPPWP---LAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR 62
S+ P P L A GP P LV PP P P VL +H PS A +
Sbjct: 773 STQPTPHGLLLEAGGPDLP-----LVLPPPPPQLLPSVL------SHAPSPSPSASKV-- 819
Query: 63 PGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLR----------------PRL------- 99
G P +R + PP P PP+PL+ PRL
Sbjct: 820 ---GVHLLEPATRD-GAPQPPPPPPPPPPPMPLQLEAHLRSHGLEPAAPSPRLRPEESLD 875
Query: 100 ------ELQGC-----PGPGDTSGGFPGSRTPRAAERTIGPGRRGAPGRRTGPLRENSLP 148
EL G P PGDT G P S A P +G R PL P
Sbjct: 876 PPGAMQELLGALEPLPPAPGDTGVGPPNSEGKDPAGAYRSPSPQGTKAPRFVPLTSICFP 935
Score = 32.7 bits (73), Expect = 0.16
Identities = 47/198 (23%), Positives = 64/198 (32%), Gaps = 40/198 (20%)
Query: 12 LAPAS-GPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL---------A 61
L PA GP + P + PPDP + LLA + A+ A
Sbjct: 214 LGPAGLGPAQTPPYRP--GPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSGA 271
Query: 62 RPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLP-----LRPRLELQGC------------ 104
PG P R+ + + P S + PP P L+ L G
Sbjct: 272 APGPPPPERALPRQDTVIKHYQRPASAQPPPPPPPAHALQHYLSCGGSYPSMGHRANLAC 331
Query: 105 ---------PGPGDTSGGFPGSRTPRAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVG 155
PG G+ S P T A+ R GP G G G P+++
Sbjct: 332 SPLGGGEPSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAGGG--GGGYRPIIQSPGY 389
Query: 156 QTGTAPLARGSRGAGRSP 173
+TG + GA R P
Sbjct: 390 KTGKGGYGAAAGGATRPP 407
Score = 30.8 bits (68), Expect = 0.62
Identities = 41/164 (25%), Positives = 57/164 (34%), Gaps = 28/164 (17%)
Query: 15 ASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGRPRRSPRS 74
+ GP +PP PP P GL P + +L G P P +
Sbjct: 476 SGGPPQPPS-----GPPPP---------GLATCQSYSPDQLQGQLYGVQG--EPYPGPAA 519
Query: 75 RSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGS--------RTPRAAERT 126
SQ + +P +S P G GP GG S ++P A R
Sbjct: 520 HSQGLPTASPSLSYSTGHSPALSGHG--GGWGPSSLGGGGEASPSHIIRPLQSPPATGRP 577
Query: 127 IGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRGAG 170
G G GAPG+ + ++ + PG G A G +G G
Sbjct: 578 PGVGSPGAPGKYLSSVLASAPFLAPPGAGSYAAG--AGGYKGKG 619
Score = 30.8 bits (68), Expect = 0.62
Identities = 48/185 (25%), Positives = 67/185 (36%), Gaps = 35/185 (18%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLR--GLRLLAHRCPPSGEAKLL 60
P PP P APAS P + L +P + + ++L+ LL R PP K L
Sbjct: 1040 PPPPPPPPPPAPASEP-----KGGLTSPIFCSTKPKKLLKTSSFHLLRRRDPPFQTPKKL 1094
Query: 61 ARPGTGRPRRSPRSRSQSVVRVAPPVSP------RAPPLPLRPRLELQGCPGPGDTSGGF 114
++ + +R+ P P R+ P L P ++ CP
Sbjct: 1095 YAQEYEFEADEDKADVPADIRLNPRRLPDLVSSCRSRPA-LSPLGDIDFCPPN------- 1146
Query: 115 PGSRTPRAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPL--------ARGS 166
PG PR GR+ +R GP R P +RP T P A+
Sbjct: 1147 PGPDGPRRR------GRKPTKAKRDGPPRPRGRPRIRPLEVPTTAGPASASTPTDGAKKP 1200
Query: 167 RGAGR 171
RG GR
Sbjct: 1201 RGRGR 1205
Score = 30.8 bits (68), Expect = 0.62
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 11 PLAPASG-PGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGRPR 69
PLAPA+ PG PP A + T + P LL + PP+ +P P
Sbjct: 1423 PLAPAAAVPGPPPLPGLPSANSNGTPEPP-------LLEEKPPPTPPPAPTPQPQPPPPP 1475
Query: 70 RSPRSRSQSVVR-VAP-PVSPRAPPLPLRPRLELQGCPGP 107
P+ S VAP P SP PPLP P + P P
Sbjct: 1476 PPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPP 1515
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 8 PPWPLAPASGPGRPPERKDLVAPP-DPTAQSP 38
PP P P+ P PP L APP +P A SP
Sbjct: 1504 PPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSP 1535
Score = 28.5 bits (62), Expect = 3.1
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 3 PVGSSPPWPLAPASGP-GRPPERKDLVAPPDPTAQSPRVL 41
P SPP P PA+ P PPE +P DP R L
Sbjct: 1507 PAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPL 1546
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 42.0 bits (97), Expect = 3e-04
Identities = 42/138 (30%), Positives = 47/138 (34%), Gaps = 29/138 (21%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR 62
P PP P P P RPP P PR PP+ E
Sbjct: 179 PPARLPPAPPGPLLRPARPPR---------PYFPRPRT-----------PPTCEP----- 213
Query: 63 PGTGRPRRSPRSRSQSVVRVAPPVSPR----APPLPLRPRLELQGCPGPGDTSGGFPGSR 118
P P P RS+ V+ PPV PR PPL LR L +G P S G
Sbjct: 214 PSRKLPPPLPLCRSRWVLAPPPPVRPRLRVLTPPLALRCALPERGSRTPSTRSAVLSGRV 273
Query: 119 TPRAAERTIGPGRRGAPG 136
E T+ P R A G
Sbjct: 274 AGLGTELTLTPSSRRAHG 291
>gi|4507917 WEE1 tyrosine kinase isoform 1 [Homo sapiens]
Length = 646
Score = 42.0 bits (97), Expect = 3e-04
Identities = 41/133 (30%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 8 PPWPLAPASGPGRP-PERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTG 66
P PL PA P P PER+ P P SP L LL CP + EA G
Sbjct: 58 PDSPLPPARSPTEPGPERR---RSPGPAPGSPGELEEDLLLPGACPGADEA--------G 106
Query: 67 RPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTPRAAERT 126
+ +P SP AP L C GPGD S G+R R+
Sbjct: 107 GGAEGDSWEEEGFGSSSPVKSPAAPYF-LGSSFSPVRCGGPGDASPRGCGARRAGEGRRS 165
Query: 127 IGPGRRGAPGRRT 139
P G P +T
Sbjct: 166 PRPDHPGTPPHKT 178
>gi|153251245 hypothetical protein LOC55150 [Homo sapiens]
Length = 129
Score = 42.0 bits (97), Expect = 3e-04
Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 5 GSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVL------RGLRLLAHRCPPSGEAK 58
G S W AP S P RPP ++L A P P + V+ R RL+ PP+
Sbjct: 23 GVSARWARAPHSAPLRPP--RELHAAPPPATPTQTVVRPAGFPRRTRLMVRSAPPTQRPP 80
Query: 59 LLARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGD 109
+ +G R+ R Q+++RV V AP LRPRL P P D
Sbjct: 81 TGSGCVSGLWRKGLGLRPQTLLRVGSVVLSSAP--ALRPRLGPCLRPPPSD 129
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 42.0 bits (97), Expect = 3e-04
Identities = 39/151 (25%), Positives = 53/151 (35%), Gaps = 9/151 (5%)
Query: 11 PLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGRPRR 70
P +P GP PP + AP P A P + GL H+ P+ P G P
Sbjct: 1248 PPSPKGGPATPPPKG---APTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSP-KGGPAT 1303
Query: 71 SPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRTPRAAERTIGPG 130
SP + + PP SP+ P P+ G P P + P A G
Sbjct: 1304 SPPKGAPTPPAATPP-SPKGSPGTPPPK----GAPTPPAVTPPSPKGTPTLPATTPSSKG 1358
Query: 131 RRGAPGRRTGPLRENSLPVLRPGVGQTGTAP 161
P + GP + P + G T +P
Sbjct: 1359 GPTTPSSKEGPTPPAATPSHKGGPAMTPPSP 1389
Score = 34.3 bits (77), Expect = 0.056
Identities = 47/187 (25%), Positives = 62/187 (33%), Gaps = 26/187 (13%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHR--------CPPS 54
P ++PP +P GP P + AP P A P GL H+ PPS
Sbjct: 1082 PPAATPP---SPKGGPATPSPKG---APMPPAATPPSPKGGLATPPHKGAPTTPAATPPS 1135
Query: 55 GEAKLLARPGTGRPRR------SPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPG 108
+ L P G P SP+ + P +P A P + L G
Sbjct: 1136 PKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAP 1195
Query: 109 DTSGGFPGSRTPRAAERTIGPGRRGAP--GRRTGPLRENSLPVLRPGVGQTGTAPLARGS 166
T P S P+ T P +GAP T P + L P T A
Sbjct: 1196 TTPAATPPS--PKGGLAT--PSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP 1251
Query: 167 RGAGRSP 173
+G +P
Sbjct: 1252 KGGPATP 1258
Score = 31.6 bits (70), Expect = 0.36
Identities = 35/136 (25%), Positives = 45/136 (33%), Gaps = 17/136 (12%)
Query: 3 PVGSSPPWPLAPASGPGRP---PERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKL 59
P G+ P + P S G P P K PP T SP+ L P + A L
Sbjct: 1005 PKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATL 1064
Query: 60 LARPGTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSGGFPGSRT 119
P +P + A P SP+ P P+ G P P P +
Sbjct: 1065 ---PSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPK----GAPMP-------PAATP 1110
Query: 120 PRAAERTIGPGRRGAP 135
P P +GAP
Sbjct: 1111 PSPKGGLATPPHKGAP 1126
Score = 30.4 bits (67), Expect = 0.81
Identities = 41/175 (23%), Positives = 53/175 (30%), Gaps = 29/175 (16%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR 62
P G+ P P S G P AP P A P G + + P+ A
Sbjct: 936 PKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPS 995
Query: 63 P----------------------GTGRPRRSPRSRSQSVVRVAPPVSPR----APPLPL- 95
P G P +P + S A P SP+ A PLP
Sbjct: 996 PKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKG 1055
Query: 96 RPRLELQGCPGP--GDTSGGFPGSRTPRAAERTIGPGRRGAPGRRTGPLRENSLP 148
P P P G + G+ TP AA G P + P+ + P
Sbjct: 1056 APTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATP 1110
Score = 29.6 bits (65), Expect = 1.4
Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 14/155 (9%)
Query: 11 PLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR-PGTGRPR 69
P +P P P R+D +A P T S + L PP+ + P P+
Sbjct: 1510 PSSPKEVPATPSSRRDPIA-PTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPK 1568
Query: 70 RSPRSRSQSVVRVAPPVSP---RAPPLPLRPRLELQGCPGPGDTSGGFPGSRTPRAAERT 126
+P + S P V+P + P P + L P P + TP + E+
Sbjct: 1569 EAPATPSSKEASSPPAVTPSTYKGAPSP-KELLIPPAVTSPSPKEAPTPPAVTPPSPEK- 1626
Query: 127 IGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAP 161
GP G T P PV + + T+P
Sbjct: 1627 -GPATPAPKGTPTSP------PVTPSSLKDSPTSP 1654
Score = 29.3 bits (64), Expect = 1.8
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 11 PLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGRPRR 70
PL+P P P R+ P P V L P T P+
Sbjct: 1409 PLSPKKAPATPVTREGAATPSKGDLTPPAVT--------------PVSLKKAPATSAPKG 1454
Query: 71 SPRSRSQSVVRVAPPVSPRAPPLPLRPR 98
P + S P V+P +P P P+
Sbjct: 1455 GPATPSSKGDPTLPAVTPPSPKEPPAPK 1482
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 41.6 bits (96), Expect = 4e-04
Identities = 49/173 (28%), Positives = 63/173 (36%), Gaps = 26/173 (15%)
Query: 8 PPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL----ARP 63
PP P PA G P + P DP + P GL P G +L
Sbjct: 455 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGD 514
Query: 64 GTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSG--------GFP 115
G+ P S + + ++ R PP P + L G PGP G G P
Sbjct: 515 GSKGPTISAQEAQAQAILQQARIALRGPPGP----MGLTGRPGPVGGPGSSGAKGESGDP 570
Query: 116 GSRTPRAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRG 168
G + PR + PG G PG+R P + G G G P A+G RG
Sbjct: 571 GPQGPRGVQGP--PGPTGKPGKRGRPGADG-------GRGMPG-EPGAKGDRG 613
Score = 30.8 bits (68), Expect = 0.62
Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 14/138 (10%)
Query: 8 PPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGR 67
PP P GRP P +P A+ R GL L GE PG
Sbjct: 581 PPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPG--- 637
Query: 68 PRRSPRSRSQSVVRVAPPVSPRAPPLPLRPR--LELQGCPG-PGDTSGGFPGSRTPRAAE 124
P R + + PR P PR L +G PG PG G G P +
Sbjct: 638 PPGDDGMRGED-----GEIGPRGLPGEAGPRGLLGPRGTPGAPGQP--GMAGVDGPPGPK 690
Query: 125 RTIGP-GRRGAPGRRTGP 141
+GP G G PG++ P
Sbjct: 691 GNMGPQGEPGPPGQQGNP 708
Score = 26.9 bits (58), Expect = 8.9
Identities = 44/174 (25%), Positives = 56/174 (32%), Gaps = 19/174 (10%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR 62
P PP P PG P +R + P + G + P GE
Sbjct: 942 PGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 1001
Query: 63 PGTGRPRRSPRSRSQSVVRVAPP---VSPRAPPLPLRPRLELQGCPG----PGDTSG--- 112
PG + P + + + P +S + P LR +G PG PG G
Sbjct: 1002 PGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGP 1061
Query: 113 -------GFPGSRTPRAAERTIG-PGRRGAPGRRTGPLRENSLPVLRPGVGQTG 158
G PG R IG PGR G G GP E P + G G
Sbjct: 1062 QGPPGPVGSPGERGSAGTAGPIGLPGRPGPQG-PPGPAGEKGAPGEKGPQGPAG 1114
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 41.6 bits (96), Expect = 4e-04
Identities = 49/173 (28%), Positives = 63/173 (36%), Gaps = 26/173 (15%)
Query: 8 PPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLL----ARP 63
PP P PA G P + P DP + P GL P G +L
Sbjct: 404 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGD 463
Query: 64 GTGRPRRSPRSRSQSVVRVAPPVSPRAPPLPLRPRLELQGCPGPGDTSG--------GFP 115
G+ P S + + ++ R PP P + L G PGP G G P
Sbjct: 464 GSKGPTISAQEAQAQAILQQARIALRGPPGP----MGLTGRPGPVGGPGSSGAKGESGDP 519
Query: 116 GSRTPRAAERTIGPGRRGAPGRRTGPLRENSLPVLRPGVGQTGTAPLARGSRG 168
G + PR + PG G PG+R P + G G G P A+G RG
Sbjct: 520 GPQGPRGVQGP--PGPTGKPGKRGRPGADG-------GRGMPG-EPGAKGDRG 562
Score = 30.8 bits (68), Expect = 0.62
Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 14/138 (10%)
Query: 8 PPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLARPGTGR 67
PP P GRP P +P A+ R GL L GE PG
Sbjct: 530 PPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPG--- 586
Query: 68 PRRSPRSRSQSVVRVAPPVSPRAPPLPLRPR--LELQGCPG-PGDTSGGFPGSRTPRAAE 124
P R + + PR P PR L +G PG PG G G P +
Sbjct: 587 PPGDDGMRGED-----GEIGPRGLPGEAGPRGLLGPRGTPGAPGQP--GMAGVDGPPGPK 639
Query: 125 RTIGP-GRRGAPGRRTGP 141
+GP G G PG++ P
Sbjct: 640 GNMGPQGEPGPPGQQGNP 657
Score = 26.9 bits (58), Expect = 8.9
Identities = 44/174 (25%), Positives = 56/174 (32%), Gaps = 19/174 (10%)
Query: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVLRGLRLLAHRCPPSGEAKLLAR 62
P PP P PG P +R + P + G + P GE
Sbjct: 891 PGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 950
Query: 63 PGTGRPRRSPRSRSQSVVRVAPP---VSPRAPPLPLRPRLELQGCPG----PGDTSG--- 112
PG + P + + + P +S + P LR +G PG PG G
Sbjct: 951 PGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGP 1010
Query: 113 -------GFPGSRTPRAAERTIG-PGRRGAPGRRTGPLRENSLPVLRPGVGQTG 158
G PG R IG PGR G G GP E P + G G
Sbjct: 1011 QGPPGPVGSPGERGSAGTAGPIGLPGRPGPQG-PPGPAGEKGAPGEKGPQGPAG 1063
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,007,032
Number of Sequences: 37866
Number of extensions: 790564
Number of successful extensions: 6317
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 1049
Number of HSP's that attempted gapping in prelim test: 4482
Number of HSP's gapped (non-prelim): 2525
length of query: 174
length of database: 18,247,518
effective HSP length: 95
effective length of query: 79
effective length of database: 14,650,248
effective search space: 1157369592
effective search space used: 1157369592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.