Search of human proteins with 239750371

Search of human proteins with 239750371

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750371 PREDICTED: hypothetical protein XP_002347408 [Homo
sapiens]
         (146 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755847 PREDICTED: hypothetical protein [Homo sapiens]           325   1e-89
gi|239750371 PREDICTED: hypothetical protein XP_002347408 [Homo ...   325   1e-89
gi|239744675 PREDICTED: hypothetical protein XP_002343236 [Homo ...   325   1e-89
gi|56550035 colon carcinoma related protein [Homo sapiens]             35   0.029
gi|169636435 caudal type homeobox 2 [Homo sapiens]                     33   0.086
gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo ...    33   0.11 
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ...    33   0.11 
gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo ...    33   0.11 
gi|148762982 hypothetical protein LOC387640 [Homo sapiens]             33   0.11 
gi|239752340 PREDICTED: hypothetical protein XP_002348205 [Homo ...    32   0.19 
gi|239746853 PREDICTED: hypothetical protein XP_002343864 [Homo ...    32   0.19 
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho...    32   0.19 
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom...    32   0.19 
gi|151301053 RNA binding motif protein 33 [Homo sapiens]               31   0.33 
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap...    31   0.43 
gi|134288896 hypothetical protein LOC143684 [Homo sapiens]             30   0.73 
gi|4507347 TBP-associated factor 2 [Homo sapiens]                      30   0.95 
gi|239756303 PREDICTED: hypothetical protein [Homo sapiens]            29   1.2  
gi|168823435 hypothetical protein LOC79747 [Homo sapiens]              29   1.2  
gi|42263098 Sp6 transcription factor [Homo sapiens]                    29   1.2  
gi|61966923 forkhead box B2 [Homo sapiens]                             29   1.2  
gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo ...    29   1.6  
gi|169204993 PREDICTED: hypothetical protein LOC100130711 [Homo ...    29   1.6  
gi|169205515 PREDICTED: hypothetical protein LOC100130711 [Homo ...    29   1.6  
gi|169204464 PREDICTED: hypothetical protein LOC100130711 [Homo ...    29   1.6  
gi|55749480 syndecan 1 precursor [Homo sapiens]                        28   2.1  
gi|29568086 syndecan 1 precursor [Homo sapiens]                        28   2.1  
gi|89886261 histidine rich carboxyl terminus 1 [Homo sapiens]          28   2.1  
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i...    28   2.8  
gi|41349446 stromal interaction molecule 2 [Homo sapiens]              28   2.8  

>gi|239755847 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 146

 Score =  325 bits (832), Expect = 1e-89
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60
           MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW
Sbjct: 1   MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60

Query: 61  KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120
           KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR
Sbjct: 61  KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120

Query: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146
           DENRSPLRQPLPCAQKSSGKDGGVWT
Sbjct: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146


>gi|239750371 PREDICTED: hypothetical protein XP_002347408 [Homo
           sapiens]
          Length = 146

 Score =  325 bits (832), Expect = 1e-89
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60
           MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW
Sbjct: 1   MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60

Query: 61  KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120
           KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR
Sbjct: 61  KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120

Query: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146
           DENRSPLRQPLPCAQKSSGKDGGVWT
Sbjct: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146


>gi|239744675 PREDICTED: hypothetical protein XP_002343236 [Homo
           sapiens]
          Length = 146

 Score =  325 bits (832), Expect = 1e-89
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60
           MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW
Sbjct: 1   MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPAKALW 60

Query: 61  KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120
           KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR
Sbjct: 61  KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVR 120

Query: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146
           DENRSPLRQPLPCAQKSSGKDGGVWT
Sbjct: 121 DENRSPLRQPLPCAQKSSGKDGGVWT 146


>gi|56550035 colon carcinoma related protein [Homo sapiens]
          Length = 326

 Score = 34.7 bits (78), Expect = 0.029
 Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 8   PDLGGWRPAAESRGVLGTLRSAEPS--LPQNFPQTLRDLQSGGEATWMQPAKALWKSCFS 65
           P LGG  P  +  G  GT  +A+PS     N  QT          +W  P  +     +S
Sbjct: 161 PCLGGVHPDFQVTGPPGTFSAADPSPWPGHNLHQTGPAPPPAVSESWPYPLTSQVSPSYS 220

Query: 66  --STPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSG 105
                +M  H   HP  H HH       RH  HH  H  P+G
Sbjct: 221 HMHDVYMRHH---HPHAHMHH-------RHRHHHHHHHPPAG 252


>gi|169636435 caudal type homeobox 2 [Homo sapiens]
          Length = 313

 Score = 33.1 bits (74), Expect = 0.086
 Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 6   EIPDLGGWRPAAESRGV--LGTLRSAEPSLPQNFPQTLRDLQSG---GEATWMQPAKALW 60
           + PD GG+  AA +     L + +S  PS P  +   LR+  +G   G A     A A  
Sbjct: 36  QYPDYGGYHVAAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHG 95

Query: 61  KSCFSSTPWMSGHCP------QHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRAS 114
            +  S    M    P       HP HH HH    A P   S  L   +P  P      A+
Sbjct: 96  LNGGSPAAAMGYSSPADYHPHHHPHHHPHHP--AAAPSCASGLLQTLNPGPPGPAATAAA 153

Query: 115 QE----GQVR---DENRSPLRQPLPCAQKSSGKD 141
           ++    GQ R   +  R P +Q L    K+  KD
Sbjct: 154 EQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKD 187


>gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo
           sapiens]
          Length = 582

 Score = 32.7 bits (73), Expect = 0.11
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 12/38 (31%)

Query: 71  SGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
           +GH P HPGHH        + RH     PH +  G QW
Sbjct: 244 AGHLPSHPGHH-------GIARH-----PHQEDGGIQW 269


>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
           sapiens]
          Length = 589

 Score = 32.7 bits (73), Expect = 0.11
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 12/38 (31%)

Query: 71  SGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
           +GH P HPGHH        + RH     PH +  G QW
Sbjct: 251 AGHLPSHPGHH-------GIARH-----PHQEDGGIQW 276


>gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo
           sapiens]
          Length = 329

 Score = 32.7 bits (73), Expect = 0.11
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 12/38 (31%)

Query: 71  SGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
           +GH P HPGHH        + RH     PH +  G QW
Sbjct: 251 AGHLPSHPGHH-------GIARH-----PHQEDGGIQW 276


>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
          Length = 908

 Score = 32.7 bits (73), Expect = 0.11
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 56  AKALWKSCFSSTPWMSGHCP-----QHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWG 109
           A A   +C      ++G CP      H  HH HH    A P   SHH PH     P  G
Sbjct: 315 AAAAGATCLERFHLVNGFCPPPHHHHHHHHHHHHHHHRAQPPQQSHHPPHHHRPQPHLG 373


>gi|239752340 PREDICTED: hypothetical protein XP_002348205 [Homo
           sapiens]
          Length = 218

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 56  AKALWKSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWG-CPRAS 114
           A A W S   + P+       H   H HH ++        HH  H  P GPQ    P   
Sbjct: 12  AVASWGSTLYAMPFAGQSAQVHEDVHQHHQVIGGPAEGKGHHDHHHQPHGPQAPLAPGNQ 71

Query: 115 QEGQ 118
           Q GQ
Sbjct: 72  QHGQ 75


>gi|239746853 PREDICTED: hypothetical protein XP_002343864 [Homo
           sapiens]
          Length = 218

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 56  AKALWKSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWG-CPRAS 114
           A A W S   + P+       H   H HH ++        HH  H  P GPQ    P   
Sbjct: 12  AVASWGSTLYAMPFAGQSAQVHEDVHQHHQVIGGPAEGKGHHDHHHQPHGPQAPLAPGNQ 71

Query: 115 QEGQ 118
           Q GQ
Sbjct: 72  QHGQ 75


>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
           sapiens]
          Length = 898

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 91  PRHCSHHLPHADPSGPQWGCPRASQEGQVRDENRSPLRQPLPCAQKSSGKDGG 143
           P+H     PH     P +G    S +GQ +  N+SP     P   K  G + G
Sbjct: 732 PKHAGKKQPHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGKQKGYNHG 784


>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
           sapiens]
          Length = 894

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 91  PRHCSHHLPHADPSGPQWGCPRASQEGQVRDENRSPLRQPLPCAQKSSGKDGG 143
           P+H     PH     P +G    S +GQ +  N+SP     P   K  G + G
Sbjct: 728 PKHAGKKQPHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGKQKGYNHG 780


>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
          Length = 1170

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 73  HCPQHPGHHCHHVLLV----AVPRHCSHHLPHADPSGPQ-----WGCPRAS---QEGQVR 120
           H PQH  HH HH L V     +P       PH   + PQ       CP+          +
Sbjct: 629 HPPQHQHHHHHHHLSVPPPPLMPMSQPQFRPHVQTAQPQASSSRMQCPQRQGLRHNTTSQ 688

Query: 121 DENRSPLRQPLPCAQKSS 138
           + ++ P++Q  P A ++S
Sbjct: 689 NVSKRPMQQMQPTAPRNS 706


>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
          Length = 2161

 Score = 30.8 bits (68), Expect = 0.43
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 61   KSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPH 100
            KS + S P    H   HP HH HH      P H   H PH
Sbjct: 985  KSLYHSGPLPPAH--HHPPHHHHHHAPPPQPHHHHAHPPH 1022


>gi|134288896 hypothetical protein LOC143684 [Homo sapiens]
          Length = 339

 Score = 30.0 bits (66), Expect = 0.73
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 62  SCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCS--HHLPHADPSGPQWGCPRASQEGQV 119
           S  SS      H P+H  HH HH       RH S  H + +  P   Q G  + S +   
Sbjct: 156 SSSSSLTEKDQHHPKHHHHHHHH-----HHRHSSSHHKISNLSPEEEQ-GLWKQSHKSSA 209

Query: 120 RDENRSPLRQPLPCAQKSSGKDGGV 144
             +N +P ++P   ++ S+G    +
Sbjct: 210 TIQNETPKKKPKLESKPSNGDSSSI 234


>gi|4507347 TBP-associated factor 2 [Homo sapiens]
          Length = 1199

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 1    MLAGAEIPDLGGWRPAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATW-------M 53
            ML     P L  +RPA+    ++    +   S P   PQ   +L   G           M
Sbjct: 1064 MLERPSTPGLSKYRPASSRSALIPQHSAGCDSTPTTKPQWSLELARKGTGKEQAPLEMSM 1123

Query: 54   QPAKALWKSCFSSTPWMSGHCPQHPGHHCHH 84
             PA +   S F+     S H   H  HH  H
Sbjct: 1124 HPAASAPLSVFTKESTASKHSDHHHHHHHEH 1154


>gi|239756303 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 232

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 5   AEIPDLGGWRPAAESRGVLGTLRSAEPSLPQN 36
           AE P  G WR A  SRG  G  RS +P  PQ+
Sbjct: 188 AEEPARGAWRVA--SRGETGLARSGDPHRPQS 217


>gi|168823435 hypothetical protein LOC79747 [Homo sapiens]
          Length = 1667

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 15/43 (34%), Positives = 18/43 (41%)

Query: 80  HHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVRDE 122
           H C H +LV   R C    P   P  P W   R  +E  + DE
Sbjct: 451 HICSHPVLVTRSRSCPLVAPPKPPPLPPWKLIRQKKETVITDE 493


>gi|42263098 Sp6 transcription factor [Homo sapiens]
          Length = 376

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 38/157 (24%), Positives = 51/157 (32%), Gaps = 21/157 (13%)

Query: 4   GAEIPDLGGWR-PAAESRGVLGTLRSAEPSLPQNFPQTLRDLQSGGEATWMQPA-----K 57
           G E+    G+  P A SR     L S  P  P  F + L+   S    +W +P       
Sbjct: 58  GPEVDFSQGYELPGASSRVTCEDLESDSPLAPGPFSKLLQPDMSHHYESWFRPTHPGAED 117

Query: 58  ALWKSCFSSTPWM-------SGHCPQHP--------GHHCHHVLLVAVPRHCSHHLPHAD 102
             W      T WM       +   P HP        G+   H L    P   +HHL  A 
Sbjct: 118 GSWWDLHPGTSWMDLPHTQGALTSPGHPGALQAGLGGYVGDHQLCAPPPHPHAHHLLPAA 177

Query: 103 PSGPQWGCPRASQEGQVRDENRSPLRQPLPCAQKSSG 139
                 G P  ++  +V       L   L  A +  G
Sbjct: 178 GGQHLLGPPDGAKALEVAAPESQGLDSSLDGAARPKG 214


>gi|61966923 forkhead box B2 [Homo sapiens]
          Length = 432

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 73  HCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGP 106
           H   HP HH HH    A   H  HH P   P  P
Sbjct: 139 HHHHHPHHHHHHH--AAAHHHHHHHPPQPPPPPP 170


>gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo
           sapiens]
          Length = 474

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 14/29 (48%), Positives = 15/29 (51%)

Query: 78  PGHHCHHVLLVAVPRHCSHHLPHADPSGP 106
           PG    H+ LVAVP H SH L   D   P
Sbjct: 126 PGFQALHIGLVAVPTHHSHPLSLGDGPAP 154


>gi|169204993 PREDICTED: hypothetical protein LOC100130711 [Homo
           sapiens]
          Length = 168

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 52  WMQPAKALWKSCFSSTPWMSGHCPQH---PGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
           W  P   L    F+STP ++         P  H H       PRH +   P A+   P+ 
Sbjct: 25  WKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRS-----PRHRASSGPVANQDSPKD 79

Query: 109 GCPRASQEGQVRDENRSPLRQP 130
           G P ++      D+ R P  QP
Sbjct: 80  GDPASAPAAPAPDQMRLPAGQP 101


>gi|169205515 PREDICTED: hypothetical protein LOC100130711 [Homo
           sapiens]
          Length = 168

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 52  WMQPAKALWKSCFSSTPWMSGHCPQH---PGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
           W  P   L    F+STP ++         P  H H       PRH +   P A+   P+ 
Sbjct: 25  WKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRS-----PRHRASSGPVANQDSPKD 79

Query: 109 GCPRASQEGQVRDENRSPLRQP 130
           G P ++      D+ R P  QP
Sbjct: 80  GDPASAPAAPAPDQMRLPAGQP 101


>gi|169204464 PREDICTED: hypothetical protein LOC100130711 [Homo
           sapiens]
          Length = 168

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 52  WMQPAKALWKSCFSSTPWMSGHCPQH---PGHHCHHVLLVAVPRHCSHHLPHADPSGPQW 108
           W  P   L    F+STP ++         P  H H       PRH +   P A+   P+ 
Sbjct: 25  WKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRS-----PRHRASSGPVANQDSPKD 79

Query: 109 GCPRASQEGQVRDENRSPLRQP 130
           G P ++      D+ R P  QP
Sbjct: 80  GDPASAPAAPAPDQMRLPAGQP 101


>gi|55749480 syndecan 1 precursor [Homo sapiens]
          Length = 310

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 12/69 (17%)

Query: 73  HCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVRDENRSPLRQPLP 132
           H    PGHH       A P     H PH +  GP     RA+++G             LP
Sbjct: 154 HRDMQPGHH--ETSTPAGPSQADLHTPHTEDGGPS-ATERAAEDG---------ASSQLP 201

Query: 133 CAQKSSGKD 141
            A+ S  +D
Sbjct: 202 AAEGSGEQD 210


>gi|29568086 syndecan 1 precursor [Homo sapiens]
          Length = 310

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 12/69 (17%)

Query: 73  HCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGPQWGCPRASQEGQVRDENRSPLRQPLP 132
           H    PGHH       A P     H PH +  GP     RA+++G             LP
Sbjct: 154 HRDMQPGHH--ETSTPAGPSQADLHTPHTEDGGPS-ATERAAEDG---------ASSQLP 201

Query: 133 CAQKSSGKD 141
            A+ S  +D
Sbjct: 202 AAEGSGEQD 210


>gi|89886261 histidine rich carboxyl terminus 1 [Homo sapiens]
          Length = 115

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 6/33 (18%)

Query: 68  PWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPH 100
           P    H P    HH HH      PRH  HHL H
Sbjct: 76  PGHVSHVPNVGLHHHHH------PRHTPHHLHH 102


>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
           isoform 1 [Homo sapiens]
          Length = 2377

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 22/98 (22%)

Query: 47  GGEATWMQPAKALWKSCFSSTPWMSGHCPQHPGHHCHHVLLVAVPRHCSHHLPHADPSGP 106
           GG+ T  QP+     SC  S   +S H   H  HH HH           +HL +     P
Sbjct: 472 GGQET--QPSS----SCSRSHRRLSVHHLVHHHHHHHH----------HYHLGNGTLRAP 515

Query: 107 QWGCPRASQEGQVRDENRS-PLRQPLPCAQKSSGKDGG 143
                RAS E Q RD N S  L  P P     SG   G
Sbjct: 516 -----RASPEIQDRDANGSRRLMLPPPSTPALSGAPPG 548


>gi|41349446 stromal interaction molecule 2 [Homo sapiens]
          Length = 833

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 9/36 (25%)

Query: 70  MSGHCPQHPGH--HCHHVLLVAVPRHCSHHLPHADP 103
           ++ H P HP H  H HH      P+H  H LP  DP
Sbjct: 618 LAPHAP-HPSHPRHPHH------PQHTPHSLPSPDP 646


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,406,900
Number of Sequences: 37866
Number of extensions: 380394
Number of successful extensions: 1244
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1195
Number of HSP's gapped (non-prelim): 68
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.