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Search of human proteins with 239749835
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
(321 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ... 662 0.0
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ... 662 0.0
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-05
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-05
gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens] 46 4e-05
gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens] 46 4e-05
gi|188536004 zinc finger protein 469 [Homo sapiens] 44 3e-04
gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo ... 43 3e-04
gi|194272161 1D-myo-inositol-trisphosphate 3-kinase B [Homo sapi... 43 3e-04
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 43 4e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 42 7e-04
gi|153792074 proline rich 12 [Homo sapiens] 42 0.001
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 41 0.001
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 41 0.001
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 41 0.001
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 41 0.002
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 40 0.002
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 40 0.002
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 40 0.002
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 40 0.002
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 40 0.003
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 40 0.003
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 40 0.003
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 0.004
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens] 40 0.004
>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
Length = 321
Score = 662 bits (1707), Expect = 0.0
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MSVQEAGATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSG 60
MSVQEAGATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSG
Sbjct: 1 MSVQEAGATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSG 60
Query: 61 HQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKIS 120
HQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKIS
Sbjct: 61 HQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKIS 120
Query: 121 KSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEF 180
KSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEF
Sbjct: 121 KSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEF 180
Query: 181 GVRSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCV 240
GVRSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCV
Sbjct: 181 GVRSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCV 240
Query: 241 LPSALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARG 300
LPSALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARG
Sbjct: 241 LPSALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARG 300
Query: 301 AALGGAFRVLAGRALLRRGME 321
AALGGAFRVLAGRALLRRGME
Sbjct: 301 AALGGAFRVLAGRALLRRGME 321
>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
sapiens]
Length = 321
Score = 662 bits (1707), Expect = 0.0
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MSVQEAGATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSG 60
MSVQEAGATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSG
Sbjct: 1 MSVQEAGATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSG 60
Query: 61 HQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKIS 120
HQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKIS
Sbjct: 61 HQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKIS 120
Query: 121 KSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEF 180
KSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEF
Sbjct: 121 KSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEF 180
Query: 181 GVRSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCV 240
GVRSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCV
Sbjct: 181 GVRSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCV 240
Query: 241 LPSALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARG 300
LPSALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARG
Sbjct: 241 LPSALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARG 300
Query: 301 AALGGAFRVLAGRALLRRGME 321
AALGGAFRVLAGRALLRRGME
Sbjct: 301 AALGGAFRVLAGRALLRRGME 321
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 46.6 bits (109), Expect = 3e-05
Identities = 87/334 (26%), Positives = 113/334 (33%), Gaps = 59/334 (17%)
Query: 7 GATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGC 66
G S P R P + SA P RG G R P S LA G
Sbjct: 158 GRLSAPPRHGPHPQSFRRPSAHPP-GRGSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLL 216
Query: 67 GDGGGARVP-----TKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISK 121
AR P + G R A G A P + A+ +++
Sbjct: 217 PSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLAR 276
Query: 122 SPIPVQ----------MAAGAAGCRTQARG---QRLTSRGRESPEATGVP-----ERRGD 163
SP P+Q +AA AG R + +R R SP G+P R G+
Sbjct: 277 SPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGE 336
Query: 164 PETRRNRKSLTPGSGEFGVRS--QSCDSTVP----------ESLERALWAQSSQLAGGPG 211
R R+ G E VR Q C P + ER Q + GGPG
Sbjct: 337 VVGARRRR----GGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPG 392
Query: 212 LAPRPGASGRGRWVSAPLPPKGTETFFCVLPS--------ALRAALSCGP------SWGE 257
++PR GA G G V + P+ + C+ PS RA + GP + E
Sbjct: 393 VSPREGAQGEG--VRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAE 450
Query: 258 DSGPRHRELRP--DP-DSRRASAERSPRCPPGSP 288
+ H P +P SRR A R P SP
Sbjct: 451 EVPGGHTASNPTYEPLSSRRTKAPSEGRDSPSSP 484
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 46.6 bits (109), Expect = 3e-05
Identities = 87/334 (26%), Positives = 113/334 (33%), Gaps = 59/334 (17%)
Query: 7 GATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGC 66
G S P R P + SA P RG G R P S LA G
Sbjct: 158 GRLSAPPRHGPHPQSFRRPSAHPP-GRGSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLL 216
Query: 67 GDGGGARVP-----TKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISK 121
AR P + G R A G A P + A+ +++
Sbjct: 217 PSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLAR 276
Query: 122 SPIPVQ----------MAAGAAGCRTQARG---QRLTSRGRESPEATGVP-----ERRGD 163
SP P+Q +AA AG R + +R R SP G+P R G+
Sbjct: 277 SPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGE 336
Query: 164 PETRRNRKSLTPGSGEFGVRS--QSCDSTVP----------ESLERALWAQSSQLAGGPG 211
R R+ G E VR Q C P + ER Q + GGPG
Sbjct: 337 VVGARRRR----GGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPG 392
Query: 212 LAPRPGASGRGRWVSAPLPPKGTETFFCVLPS--------ALRAALSCGP------SWGE 257
++PR GA G G V + P+ + C+ PS RA + GP + E
Sbjct: 393 VSPREGAQGEG--VRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAE 450
Query: 258 DSGPRHRELRP--DP-DSRRASAERSPRCPPGSP 288
+ H P +P SRR A R P SP
Sbjct: 451 EVPGGHTASNPTYEPLSSRRTKAPSEGRDSPSSP 484
>gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens]
Length = 621
Score = 46.2 bits (108), Expect = 4e-05
Identities = 56/209 (26%), Positives = 72/209 (34%), Gaps = 24/209 (11%)
Query: 20 GPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGAR-VPTKS 78
GPA + E + + GPGV W TSG G G G R +P +
Sbjct: 18 GPASGTGSSQEGLQETRLAAGDGPGV--------WAAETSG--GNGLGAAAARRSLPDSA 67
Query: 79 VPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISKSPIPVQM-------AAG 131
P G P AG + + PAA L G +K++ SP AG
Sbjct: 68 SPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVGHELGTAG 127
Query: 132 AAGCRTQARG---QRLTSRGRESP-EATGVPERRGDPETRRNRKSLTPGSGEFGVRS--Q 185
AG R G LT+ G E P A G+ DP SL + S
Sbjct: 128 DAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPS 187
Query: 186 SCDSTVPESLERALWAQSSQLAGGPGLAP 214
SC+ E E + + A PG P
Sbjct: 188 SCEFNSEEGAENRVPEEEEGAAVLPGAVP 216
>gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens]
Length = 620
Score = 46.2 bits (108), Expect = 4e-05
Identities = 56/209 (26%), Positives = 72/209 (34%), Gaps = 24/209 (11%)
Query: 20 GPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGAR-VPTKS 78
GPA + E + + GPGV W TSG G G G R +P +
Sbjct: 18 GPASGTGSSQEGLQETRLAAGDGPGV--------WAAETSG--GNGLGAAAARRSLPDSA 67
Query: 79 VPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISKSPIPVQM-------AAG 131
P G P AG + + PAA L G +K++ SP AG
Sbjct: 68 SPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVGHELGTAG 127
Query: 132 AAGCRTQARG---QRLTSRGRESP-EATGVPERRGDPETRRNRKSLTPGSGEFGVRS--Q 185
AG R G LT+ G E P A G+ DP SL + S
Sbjct: 128 DAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFSNLHSFPS 187
Query: 186 SCDSTVPESLERALWAQSSQLAGGPGLAP 214
SC+ E E + + A PG P
Sbjct: 188 SCEFNSEEGAENRVPEEEEGAAVLPGAVP 216
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 43.5 bits (101), Expect = 3e-04
Identities = 89/338 (26%), Positives = 108/338 (31%), Gaps = 59/338 (17%)
Query: 6 AGATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPG------VLLGASSVSWGLATS 59
A P AR G PL + R G R RC P +L VS S
Sbjct: 3571 ASLPRPGARGQDAEGKRAPLVFSGK-RRAPGARGRCAPDHFQEDHLLQKEKEVSSSHMVS 3629
Query: 60 GHQGRGCGDGGGARVPTKSVPGGGPRASRS---------------VREVAGGGFACNPGK 104
RG G A P R++ S V +A G A
Sbjct: 3630 EGGPRGTFHKGSATKPAGCQSSSKDRSAASTPSKALKFPVHPRKAVGSLAPGELARGTEN 3689
Query: 105 G--PAAVRLALGGGWKISKSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVPERRG 162
G PA + G + S SP P G G + Q +L S +P P R
Sbjct: 3690 GMKPATPKAKPGPSSQGSGSPRPGTKTGG--GSQPQPASGQLQSETATTPAKPSFPSRSP 3747
Query: 163 DPE---TRRNRKSLTPGSGEFGVRSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGAS 219
PE R KS T G E G + E E + + Q+ PG A
Sbjct: 3748 APERLPARAQAKSCTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQV---PGPARSESVG 3804
Query: 220 GRGRWVSAPLPPKGTETFFCVLPSALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAER 279
GR SAP P T + + R +P P+S +
Sbjct: 3805 SFGRAPSAPDKPPRTPR-------------------KQATPSRVLPTKPKPNS-----QN 3840
Query: 280 SPRCPPGSPRKAGPGRRDARGAALGGAFRVLAGRALLR 317
PR PP RKA PG R LG AF GR LLR
Sbjct: 3841 KPRPPPSEQRKAEPGHTQ-RKDRLGKAFP--QGRPLLR 3875
>gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo
sapiens]
Length = 337
Score = 43.1 bits (100), Expect = 3e-04
Identities = 49/205 (23%), Positives = 76/205 (37%), Gaps = 29/205 (14%)
Query: 3 VQEAGATSPPARILKEPGP---AQPLSAGPEWDRGRGVRRRCGPGVLLGASSVS----WG 55
++E+ S P R L + +Q + P+ G G + + ++GA S WG
Sbjct: 106 IRESWTRSAPWRCLSQDAGRAGSQVCGSSPQTRGGGGKKLQRQKATVMGAKSRKKPQHWG 165
Query: 56 --LATSGHQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLAL 113
AT+G + GGG + P + P +R+ + GG GK P + A
Sbjct: 166 QKAATAGAKS----PGGGGKKPGQEKPAATGEKTRAAKSRGGG------GKKPRREKPAA 215
Query: 114 GGGWKISKSPIPVQMAAGAAGCRTQARGQRLTSRGRES----------PEATGVPERRGD 163
G K+ A G + + RGQ+ T G +S P A G G
Sbjct: 216 AGAKNPQKAAAAGAKFREAGGRKPRWRGQKATEAGAKSRGGGGIKPQKPAAAGAKIHGGK 275
Query: 164 PETRRNRKSLTPGSGEFGVRSQSCD 188
RR + S G+ + CD
Sbjct: 276 KPRRRGQSSGNGVEGQNSLAFLECD 300
>gi|194272161 1D-myo-inositol-trisphosphate 3-kinase B [Homo
sapiens]
Length = 946
Score = 43.1 bits (100), Expect = 3e-04
Identities = 49/168 (29%), Positives = 67/168 (39%), Gaps = 18/168 (10%)
Query: 138 QARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLT---PGSGEFGVRSQSCDSTVP-- 192
+ +GQ L S +PE G R G+P + + L PGSGE V + ++TV
Sbjct: 344 ERQGQFLGSETSPAPERGG--PRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQ 401
Query: 193 --ESLERALWAQSSQLAG--GPGLAPRPGASGRGRWVSAPLPPKGTETFFCVLPSALRAA 248
ES + W++ + GP A G GRW + G+ T L +
Sbjct: 402 SAESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTL-----GLLGGS 456
Query: 249 LSCGPSWG--EDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPG 294
S P G E P R L P P A + P+CPPG PG
Sbjct: 457 PSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDRVGVQPG 504
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 42.7 bits (99), Expect = 4e-04
Identities = 58/204 (28%), Positives = 77/204 (37%), Gaps = 43/204 (21%)
Query: 122 SPIPVQMAAGAAGCRTQARG---QRLTSRGRESPEATGVP-----ERRGDPETRRNRKSL 173
S P ++AA AG R + +R R SP G+P R G+ R R+
Sbjct: 193 SASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRR-- 250
Query: 174 TPGSGEFGVRS--QSCDSTVP----------ESLERALWAQSSQLAGGPGLAPRPGASGR 221
G E VR Q C P + ER Q + GGPG++PR GA G
Sbjct: 251 --GGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGE 308
Query: 222 GRWVSAPLPPKGTETFFCVLPS--------ALRAALSCGP------SWGEDSGPRHRELR 267
G V + P+ + C+ PS RA + GP + E+ H
Sbjct: 309 G--VRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAEEVPGGHTASN 366
Query: 268 P--DP-DSRRASAERSPRCPPGSP 288
P +P SRR A R P SP
Sbjct: 367 PTYEPLSSRRTKAPSEGRDSPSSP 390
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 42.4 bits (98), Expect = 6e-04
Identities = 58/265 (21%), Positives = 82/265 (30%), Gaps = 68/265 (25%)
Query: 4 QEAGATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQG 63
Q+A A AR+ + G A W + G G +
Sbjct: 62 QKAAAGGKKARLRGQKGAVAGKEARQHWQKAAGA---------------------GGAEN 100
Query: 64 RGCGDGGGARVPTKSVPGGGPRASRSVREVAGGG------------FACNPGKGPAAVRL 111
RG G+ A TKS+ G G + R ++ A G A + +G A +
Sbjct: 101 RGGGEQKAAAAGTKSLGGRGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSKNRGAGAQKA 160
Query: 112 ALGGGWKISKSPIPVQMAAGAAGCRT-----------------------------QARGQ 142
A G K P + AA A R+ + RG
Sbjct: 161 AAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGKTRGG 220
Query: 143 RLTSRGRESPEATGVPERRG-----DPETRRNRKSLTPGSGEFGVRSQSCDSTVPESLER 197
R R P A G RRG + RR +K+ T G G D + +
Sbjct: 221 RRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQGQN 280
Query: 198 ALWAQSSQLAGGPGLAPRPGASGRG 222
A A ++ G +P A GRG
Sbjct: 281 AALA-GAKRRGAATAGEKPAAKGRG 304
Score = 35.8 bits (81), Expect = 0.052
Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 28/176 (15%)
Query: 8 ATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPG--VLLGASSVSWGLATSGHQGRG 65
A PA + G +P GP+ + RG + R G G A +G + RG
Sbjct: 411 AQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRG 470
Query: 66 CGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISKSPIP 125
G +AS + + GGG + GK W+ +
Sbjct: 471 ------------DKKQGRQKASAAGTKSRGGGLKSHSGKNL----------WRRGQKAEA 508
Query: 126 VQMAAGAAGCRTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEFG 181
A AAG +++ R Q R+ P G R G ++R+ +K++ G+ G
Sbjct: 509 AGEKATAAGAKSRGRKQ----PRRQKPAVAGAKSRVGGSKSRQRQKAVAAGATSHG 560
Score = 31.6 bits (70), Expect = 0.99
Identities = 49/193 (25%), Positives = 69/193 (35%), Gaps = 21/193 (10%)
Query: 4 QEAGATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQG 63
++A A +R K+P +P AG + G R+ V GA+S G Q
Sbjct: 511 EKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGG---GNKQS 567
Query: 64 RGCGDG----GGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVR-LALGGGWK 118
RG G G GGG + + AG + + G A R A G G K
Sbjct: 568 RGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDGGKKAWRQKAAGTGAK 627
Query: 119 ISKSP-------IPVQMAAGAAGCRT------QARGQRLTSRGRESPEATGVPERRGDPE 165
K P A A G + Q R Q+ + G ES A V + +
Sbjct: 628 SRKKPWRRGQKDAAAAEKAWATGATSRGSGGKQPRWQKPAAAGSESSAAAAVGQEAEARK 687
Query: 166 TRRNRKSLTPGSG 178
R R++ + G G
Sbjct: 688 KPRRRRAKSRGDG 700
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 42.0 bits (97), Expect = 7e-04
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 243 SALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARGAA 302
+ LR+ + G + G + P R+ RP R + R+PRC P R+ G R A
Sbjct: 78 AGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAP--DRRCGDSAPRHRPRA 135
Query: 303 LGGAFRVLAGRALLRR 318
LG R L GR LLR+
Sbjct: 136 LGRGRRPLRGRVLLRQ 151
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 41.6 bits (96), Expect = 0.001
Identities = 71/293 (24%), Positives = 92/293 (31%), Gaps = 39/293 (13%)
Query: 8 ATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGCG 67
A SP PG +P AGP G GAS + G +G G G G
Sbjct: 330 ACSPLGGGEPSPGAGEPSKAGPS-------------GATAGASGRATGPEAAG--GGGAG 374
Query: 68 DGGGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISKSPIPVQ 127
GGG P P G + + A GG P A G +
Sbjct: 375 GGGGGYRPIIQSP--GYKTGKGGYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKA 432
Query: 128 MAAGAAGCRTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLT-----PGSGEFGV 182
AG AG + + GQ +G P+A G G + S + P SG
Sbjct: 433 SGAGGAGGQAYSPGQ---PQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGPPQPPSGPPPP 489
Query: 183 RSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCVLP 242
+C S P+ L+ QL G G P PG + + + P T
Sbjct: 490 GLATCQSYSPDQLQ-------GQLYGVQG-EPYPGPAAHSQGLPTASPSLSYST------ 535
Query: 243 SALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGR 295
A G WG S E P R + + PPG PG+
Sbjct: 536 GHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGK 588
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 41.2 bits (95), Expect = 0.001
Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 31/166 (18%)
Query: 2 SVQEAGATSPPARILKEPGPA--QPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATS 59
S +G T+ + P P+ P S+GP R P + A++ + + ++
Sbjct: 23 SASSSGTTTSTSSATSSPAPSIGPPASSGPTLFR---------PEPIASAAAAAATVTST 73
Query: 60 GHQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNP-------GKGPAAVRLA 112
G G G G GGG GGG GGG CNP G G ++
Sbjct: 74 GGGGGGGGSGGGGGSSGNGGGGGG----------GGGGSNCNPNLAAASNGSGGGGGGIS 123
Query: 113 LGGGWKISKSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVP 158
GGG S P+ + G++ + + +S S ++ P
Sbjct: 124 AGGG---VASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGP 166
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 41.2 bits (95), Expect = 0.001
Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 31/166 (18%)
Query: 2 SVQEAGATSPPARILKEPGPA--QPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATS 59
S +G T+ + P P+ P S+GP R P + A++ + + ++
Sbjct: 23 SASSSGTTTSTSSATSSPAPSIGPPASSGPTLFR---------PEPIASAAAAAATVTST 73
Query: 60 GHQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNP-------GKGPAAVRLA 112
G G G G GGG GGG GGG CNP G G ++
Sbjct: 74 GGGGGGGGSGGGGGSSGNGGGGGG----------GGGGSNCNPNLAAASNGSGGGGGGIS 123
Query: 113 LGGGWKISKSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVP 158
GGG S P+ + G++ + + +S S ++ P
Sbjct: 124 AGGG---VASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGP 166
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 41.2 bits (95), Expect = 0.001
Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 31/166 (18%)
Query: 2 SVQEAGATSPPARILKEPGPA--QPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATS 59
S +G T+ + P P+ P S+GP R P + A++ + + ++
Sbjct: 23 SASSSGTTTSTSSATSSPAPSIGPPASSGPTLFR---------PEPIASAAAAAATVTST 73
Query: 60 GHQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNP-------GKGPAAVRLA 112
G G G G GGG GGG GGG CNP G G ++
Sbjct: 74 GGGGGGGGSGGGGGSSGNGGGGGG----------GGGGSNCNPNLAAASNGSGGGGGGIS 123
Query: 113 LGGGWKISKSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVP 158
GGG S P+ + G++ + + +S S ++ P
Sbjct: 124 AGGG---VASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGP 166
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 40.8 bits (94), Expect = 0.002
Identities = 71/249 (28%), Positives = 87/249 (34%), Gaps = 41/249 (16%)
Query: 70 GGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGG-W----------- 117
G RVP P A+RS R GG + G G A VR A GGG W
Sbjct: 22 GSQRVPQ-------PPAARSPRGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFG 74
Query: 118 KISKSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGS 177
+ + V GAA R R+ P G P R P T + S
Sbjct: 75 RGEGGDLQVSSGPGAAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSAS------FS 128
Query: 178 GEFGVRSQSCDSTVPESL--ERALWAQSSQLAGGPGLAPRPGA-SGRGRWVSAPLPPKGT 234
+ +R +S + L +RA SS GPG P A G A G
Sbjct: 129 NQTRLRRRSASALPAPRLCPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQAAGG 188
Query: 235 ETFFCVLPSALRAALSCG--PSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAG 292
+ AAL+C P +G R R +R RR A P +PR G
Sbjct: 189 GRSRSAFVAGRDAALACAQLPRRPRGAGAR-RGMR-----RRLGAGERP-----APRPRG 237
Query: 293 PGRRDARGA 301
P R ARGA
Sbjct: 238 PPRAPARGA 246
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 40.8 bits (94), Expect = 0.002
Identities = 71/249 (28%), Positives = 87/249 (34%), Gaps = 41/249 (16%)
Query: 70 GGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGG-W----------- 117
G RVP P A+RS R GG + G G A VR A GGG W
Sbjct: 22 GSQRVPQ-------PPAARSPRGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFG 74
Query: 118 KISKSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGS 177
+ + V GAA R R+ P G P R P T + S
Sbjct: 75 RGEGGDLQVSSGPGAAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSAS------FS 128
Query: 178 GEFGVRSQSCDSTVPESL--ERALWAQSSQLAGGPGLAPRPGA-SGRGRWVSAPLPPKGT 234
+ +R +S + L +RA SS GPG P A G A G
Sbjct: 129 NQTRLRRRSASALPAPRLCPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQAAGG 188
Query: 235 ETFFCVLPSALRAALSCG--PSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAG 292
+ AAL+C P +G R R +R RR A P +PR G
Sbjct: 189 GRSRSAFVAGRDAALACAQLPRRPRGAGAR-RGMR-----RRLGAGERP-----APRPRG 237
Query: 293 PGRRDARGA 301
P R ARGA
Sbjct: 238 PPRAPARGA 246
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 40.4 bits (93), Expect = 0.002
Identities = 55/182 (30%), Positives = 67/182 (36%), Gaps = 34/182 (18%)
Query: 7 GATSPPARILKEPGPAQP---LSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQG 63
G + P R+L+ P PA+P L W V P L + + WG + G
Sbjct: 3 GPPAWPLRLLEPPSPAEPGRLLPVACVWAAASRVPGSLSPFTGLRPARL-WGAGPALLWG 61
Query: 64 RGCGDGGGARVPTKSVPGGGPRASRSVREVA---------GGGFACNPGKGPAAVRLALG 114
G AR GGGP ASR V +A G C GP A RL
Sbjct: 62 -----VGAARRWRSGCRGGGPGASRGVLGLARLLGLWARGPGSCRCGAFAGPGAPRL--- 113
Query: 115 GGWKISKSPIPVQMAAGA-AGCRTQARGQRLT--SRGRESPEATGVPERR-----GDPET 166
++ P AA A AG RG +GR P A G+PE R PE
Sbjct: 114 -----PRARFPGGPAAAAWAGDEAWRRGPAAPPGDKGRLRPAAAGLPEARKLLGLAYPER 168
Query: 167 RR 168
RR
Sbjct: 169 RR 170
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 40.4 bits (93), Expect = 0.002
Identities = 89/331 (26%), Positives = 107/331 (32%), Gaps = 37/331 (11%)
Query: 7 GATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGC 66
GA PP R L P SA RG R+ P G + S G QG G
Sbjct: 87 GAQRPPERFL--PSSVSAGSAARTLRRGSEARKAQTPRPA-GVAQGSGGGGERWLQGLGP 143
Query: 67 GDGGG-ARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAV-RLALGGGWKISKSPI 124
G G + P S P R GG GK A + + A GGG K +++
Sbjct: 144 PRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRN-- 201
Query: 125 PVQMAAGAAGCRTQARGQRLTSRGRESP-EATGVPERRGDPETRRNRKSLTPGSGEFGVR 183
MAA G + Q T R P E P P R R L PG G
Sbjct: 202 ---MAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRI-RCFLAPGRSRVGAA 257
Query: 184 SQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCVLPS 243
+ E+ R LW + A R G G GR A G P
Sbjct: 258 LTE-EQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAG--------PR 308
Query: 244 ALRAALSCGP---SWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKA--------- 291
+ G SW S PDP + + + +P PP R+A
Sbjct: 309 GVAEEAESGRGWRSWPSFSAVSGGGESPDP-AGCSRGKAAPEEPPRVARRAHENRLRTSA 367
Query: 292 ---GPGRRDARGAALGGAFRVLAGRALLRRG 319
GPG R G GG AG L R G
Sbjct: 368 RGLGPGDRRGDGRFGGGRGAEGAGSGLPRGG 398
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 40.4 bits (93), Expect = 0.002
Identities = 89/331 (26%), Positives = 107/331 (32%), Gaps = 37/331 (11%)
Query: 7 GATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGC 66
GA PP R L P SA RG R+ P G + S G QG G
Sbjct: 87 GAQRPPERFL--PSSVSAGSAARTLRRGSEARKAQTPRPA-GVAQGSGGGGERWLQGLGP 143
Query: 67 GDGGG-ARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAV-RLALGGGWKISKSPI 124
G G + P S P R GG GK A + + A GGG K +++
Sbjct: 144 PRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRN-- 201
Query: 125 PVQMAAGAAGCRTQARGQRLTSRGRESP-EATGVPERRGDPETRRNRKSLTPGSGEFGVR 183
MAA G + Q T R P E P P R R L PG G
Sbjct: 202 ---MAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRI-RCFLAPGRSRVGAA 257
Query: 184 SQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCVLPS 243
+ E+ R LW + A R G G GR A G P
Sbjct: 258 LTE-EQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAG--------PR 308
Query: 244 ALRAALSCGP---SWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKA--------- 291
+ G SW S PDP + + + +P PP R+A
Sbjct: 309 GVAEEAESGRGWRSWPSFSAVSGGGESPDP-AGCSRGKAAPEEPPRVARRAHENRLRTSA 367
Query: 292 ---GPGRRDARGAALGGAFRVLAGRALLRRG 319
GPG R G GG AG L R G
Sbjct: 368 RGLGPGDRRGDGRFGGGRGAEGAGSGLPRGG 398
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 40.4 bits (93), Expect = 0.002
Identities = 73/288 (25%), Positives = 86/288 (29%), Gaps = 52/288 (18%)
Query: 17 KEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGARVPT 76
K G AQ + W G R RC ASS GL C R P
Sbjct: 424 KRWGLAQHVRCSGLWGHGTAGRERCSQDSASPASST--GLPEGSEPESSCCP----RTPE 477
Query: 77 KSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISKSPIPVQMAAGAAGCR 136
V P A AGG +PG + AG
Sbjct: 478 DGVDSASPSAQIGAERKAGGSLGEDPG------------------------LCIDGAGLG 513
Query: 137 TQARGQRLTSRGR-ESPEATGVPERRGDPETRRNRKSLTPGSGEFGVRSQSCDSTVPESL 195
+G RLT R R E ++ G E GS E+G R Q C
Sbjct: 514 GPEQGGRLTPRARSEEGASSDSSASTGSHE----------GSSEWGGRPQGCPGKA---- 559
Query: 196 ERALWAQSSQLAGGPGLAPRPGASG-RGRWVSAPLPPKGTE--TFFCVLPSALRAALSCG 252
RA +Q GG +P S R + A +GTE T V L LSC
Sbjct: 560 -RAETSQQEASEGGDPASPALSLSSLRSDDLQAETQGQGTEQATGAAVTREPLVLGLSC- 617
Query: 253 PSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARG 300
SW + G + RS SP G GR RG
Sbjct: 618 -SW-DSEGASSTPSTCTSSQQGQRRHRSRASAMSSPSSPGLGRVAPRG 663
Score = 33.9 bits (76), Expect = 0.20
Identities = 57/239 (23%), Positives = 75/239 (31%), Gaps = 21/239 (8%)
Query: 5 EAGATSPP-ARILKEPG--PAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGH 61
E GA P + +PG PAQ GP + R C + G
Sbjct: 814 EQGAVGPHRSHCCSQPGTQPAQEAQRGPSPEASWLCGRYC--------PTPPRGRPCPQR 865
Query: 62 QGRGCGDGGGARVPTKSVPGGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISK 121
+ CG G + T PGG P+ G + P G + A G
Sbjct: 866 RSSSCGSTGSSHQSTARGPGGSPQEG---TRQPGPTPSPGPNSGASRRSSASQGAGSRGL 922
Query: 122 SPIPVQMAAGAAGCRTQARGQRLTSRGRESPEATGVPERRGDPE----TRRNRKSLTPGS 177
S + G + +A G +S R SPEA PE T G+
Sbjct: 923 SEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMTYELADETTGA 982
Query: 178 GEFGVRSQSCDSTVPESLE---RALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKG 233
G+R D SLE A L G PG P P + G + P +G
Sbjct: 983 AGGGLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLGSSDTGPQSGEG 1041
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 40.0 bits (92), Expect = 0.003
Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 23/104 (22%)
Query: 192 PESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCVLPSALRAALSC 251
P LW + +L G PG AP G R A LPP GT + F RAA
Sbjct: 60 PARPSHLLWPK--RLPGRPGRAP-----GDRR---AALPPPGTRSPFA------RAAAEL 103
Query: 252 GPSWGEDSGPRHREL-------RPDPDSRRASAERSPRCPPGSP 288
GPS+ + +G R R + RP P S A++ R+ R G P
Sbjct: 104 GPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDP 147
Score = 37.4 bits (85), Expect = 0.018
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 215 RPGASGRGRWV-SAPLPPKGTETFFCVLPSALRAALSCGPSWGEDSGPRHRELRPDPDSR 273
R G +GRG W+ P G E++ +L S R A G S+ + PR R P P
Sbjct: 6 RAGRAGRGPWIIRGASRPSGAESYSELLSS--RPASPRGASFSAE--PRPRASLPPPRPA 61
Query: 274 RASAERSPRCPPGSPRKA---------GPGRRD--ARGAA-LGGAFRVLAG 312
R S P+ PG P +A PG R AR AA LG +++ +AG
Sbjct: 62 RPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAG 112
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 40.0 bits (92), Expect = 0.003
Identities = 74/282 (26%), Positives = 90/282 (31%), Gaps = 65/282 (23%)
Query: 21 PAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGARVPTKSVP 80
P PL A E D R GP GA + G + + +RVP +P
Sbjct: 100 PRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSRAGGGLTKYNSAH----SSSRVPRPRLP 155
Query: 81 GGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISKSPIPVQMAAGAAGCRTQAR 140
+ G PG A R LGG +A RT+ R
Sbjct: 156 S----------QRRGASCGLGPGPESRAARQGLGGR---------------SARARTR-R 189
Query: 141 GQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEFG-VRSQSCDSTVPESLERAL 199
G T R P TG + P TR ++ GS G R S + R L
Sbjct: 190 GPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCL 249
Query: 200 WAQSSQLAGGPGLAPRPGASG----RGRWVSAPL--PPKGTETFFCVLPSALRAALSCGP 253
GL+P PG S R PL PP + PSA R C
Sbjct: 250 -----------GLSP-PGRSRLFSPRSSLARPPLRFPPARP----ALSPSARRR---CRV 290
Query: 254 SWGEDSGP---------RHRELRPDPDSRRASAERSPRCPPG 286
+W + S P RH RP RA A R P PG
Sbjct: 291 NWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPG 332
>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 40.0 bits (92), Expect = 0.003
Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 23/104 (22%)
Query: 192 PESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCVLPSALRAALSC 251
P LW + +L G PG AP G R A LPP GT + F RAA
Sbjct: 60 PARPSHLLWPK--RLPGRPGRAP-----GDRR---AALPPPGTRSPFA------RAAAEL 103
Query: 252 GPSWGEDSGPRHREL-------RPDPDSRRASAERSPRCPPGSP 288
GPS+ + +G R R + RP P S A++ R+ R G P
Sbjct: 104 GPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDP 147
Score = 35.8 bits (81), Expect = 0.052
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 215 RPGASGRGRWV-SAPLPPKGTETFFCVLPSALRAALSCGPSWGEDSGPRHRELRPDPDSR 273
R G +GRG W+ P G E++ +L S R G S+ + PR R P P
Sbjct: 6 RAGRAGRGPWIIRGASRPSGAESYSELLSS--RPVSPRGASFSAE--PRPRASLPPPRPA 61
Query: 274 RASAERSPRCPPGSPRKA---------GPGRRD--ARGAA-LGGAFRVLAG 312
R S P+ PG P +A PG R AR AA LG +++ +AG
Sbjct: 62 RPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAG 112
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 40.0 bits (92), Expect = 0.003
Identities = 74/282 (26%), Positives = 90/282 (31%), Gaps = 65/282 (23%)
Query: 21 PAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGARVPTKSVP 80
P PL A E D R GP GA + G + + +RVP +P
Sbjct: 100 PRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSRAGGGLTKYNSAH----SSSRVPRPRLP 155
Query: 81 GGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISKSPIPVQMAAGAAGCRTQAR 140
+ G PG A R LGG +A RT+ R
Sbjct: 156 S----------QRRGASCGLGPGPESRAARQGLGGR---------------SARARTR-R 189
Query: 141 GQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEFG-VRSQSCDSTVPESLERAL 199
G T R P TG + P TR ++ GS G R S + R L
Sbjct: 190 GPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCL 249
Query: 200 WAQSSQLAGGPGLAPRPGASG----RGRWVSAPL--PPKGTETFFCVLPSALRAALSCGP 253
GL+P PG S R PL PP + PSA R C
Sbjct: 250 -----------GLSP-PGRSRLFSPRSSLARPPLRFPPARP----ALSPSARRR---CRV 290
Query: 254 SWGEDSGP---------RHRELRPDPDSRRASAERSPRCPPG 286
+W + S P RH RP RA A R P PG
Sbjct: 291 NWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPG 332
>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 40.0 bits (92), Expect = 0.003
Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 23/104 (22%)
Query: 192 PESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCVLPSALRAALSC 251
P LW + +L G PG AP G R A LPP GT + F RAA
Sbjct: 60 PARPSHLLWPK--RLPGRPGRAP-----GDRR---AALPPPGTRSPFA------RAAAEL 103
Query: 252 GPSWGEDSGPRHREL-------RPDPDSRRASAERSPRCPPGSP 288
GPS+ + +G R R + RP P S A++ R+ R G P
Sbjct: 104 GPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDP 147
Score = 35.8 bits (81), Expect = 0.052
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 215 RPGASGRGRWV-SAPLPPKGTETFFCVLPSALRAALSCGPSWGEDSGPRHRELRPDPDSR 273
R G +GRG W+ P G E++ +L S R G S+ + PR R P P
Sbjct: 6 RAGRAGRGPWIIRGASRPSGAESYSELLSS--RPVSPRGASFSAE--PRPRASLPPPRPA 61
Query: 274 RASAERSPRCPPGSPRKA---------GPGRRD--ARGAA-LGGAFRVLAG 312
R S P+ PG P +A PG R AR AA LG +++ +AG
Sbjct: 62 RPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAG 112
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 40.0 bits (92), Expect = 0.003
Identities = 74/282 (26%), Positives = 90/282 (31%), Gaps = 65/282 (23%)
Query: 21 PAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGARVPTKSVP 80
P PL A E D R GP GA + G + + +RVP +P
Sbjct: 100 PRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSRAGGGLTKYNSAH----SSSRVPRPRLP 155
Query: 81 GGGPRASRSVREVAGGGFACNPGKGPAAVRLALGGGWKISKSPIPVQMAAGAAGCRTQAR 140
+ G PG A R LGG +A RT+ R
Sbjct: 156 S----------QRRGASCGLGPGPESRAARQGLGGR---------------SARARTR-R 189
Query: 141 GQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEFG-VRSQSCDSTVPESLERAL 199
G T R P TG + P TR ++ GS G R S + R L
Sbjct: 190 GPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCL 249
Query: 200 WAQSSQLAGGPGLAPRPGASG----RGRWVSAPL--PPKGTETFFCVLPSALRAALSCGP 253
GL+P PG S R PL PP + PSA R C
Sbjct: 250 -----------GLSP-PGRSRLFSPRSSLARPPLRFPPARP----ALSPSARRR---CRV 290
Query: 254 SWGEDSGP---------RHRELRPDPDSRRASAERSPRCPPG 286
+W + S P RH RP RA A R P PG
Sbjct: 291 NWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPG 332
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 39.7 bits (91), Expect = 0.004
Identities = 88/326 (26%), Positives = 107/326 (32%), Gaps = 62/326 (19%)
Query: 7 GATSPPARILKEPGPAQPLS----------AGPEWDRG----RGVRRRCGPGVLLGASSV 52
GA PP GPA P AGP+ RG +GVR GP GA+
Sbjct: 329 GAAGPPG----PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGP 384
Query: 53 SWGLATSGHQGRGCGDGG----------GARVPTKSVPGGGPRASRSVREVAGGGFACNP 102
+ G G +G GAR P+ GGP + N
Sbjct: 385 AGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKG-----------NS 433
Query: 103 GKGPAAVRLALGGGWKISKSPIPVQMAAGAAGCRTQARGQRLTSRGRESPEAT-GVPERR 161
G+ P A G K P+ VQ G AG G+R +RG P G P R
Sbjct: 434 GE-PGAPGSKGDTGAKGEPGPVGVQGPPGPAG----EEGKR-GARGEPGPTGLPGPPGER 487
Query: 162 GDPETRRNRKSLTPGSGEFGVRSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGR 221
G P +R PG+ GV + S A S AG PG A PGA G
Sbjct: 488 GGPGSRG-----FPGAD--GVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL 540
Query: 222 GRWVSAPLPPKGTETFFCVLPSALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAE--- 278
+P P T P GP G + P + A+ E
Sbjct: 541 TGSPGSPGPDGKTGP-----PGPAGQDGRPGPP-GPPGARGQAGVMGFPGPKGAAGEPGK 594
Query: 279 RSPRCPPGSPRKAGPGRRDARGAALG 304
R PG P GP +D A G
Sbjct: 595 AGERGVPGPPGAVGPAGKDGEAGAQG 620
Score = 35.0 bits (79), Expect = 0.089
Identities = 75/298 (25%), Positives = 91/298 (30%), Gaps = 56/298 (18%)
Query: 6 AGATSPPARILKEPGPAQPLSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRG 65
AG PP P P AG E G+G R GP G +G +G
Sbjct: 880 AGRVGPPGPSGNAGPPGPPGPAGKEG--GKGPRGETGPAGRPGEVGPPGPPGPAGEKGSP 937
Query: 66 CGDGGGARVPTKSVPGGGPRASRSVREVAG-------GGFACNPGKGPAAVRLALGG--G 116
DG P + GP+ R V G GF PG + G G
Sbjct: 938 GADG-----PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASG 992
Query: 117 WKISKSPIPVQMAAGAAGCRTQARGQRLTSRGRE-SPEATGVPERRGDPETRRNRKSLTP 175
+ P+ AG G GRE +P A G P R G P + +R
Sbjct: 993 ERGPPGPMGPPGLAGPPG-----------ESGREGAPGAEGSPGRDGSPGAKGDR----- 1036
Query: 176 GSGEFGVRSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTE 235
GE G P G PG G SG R + P P G
Sbjct: 1037 --GETGPAGPPGAPGAP---------------GAPGPVGPAGKSG-DRGETGPAGPAGP- 1077
Query: 236 TFFCVLPSALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGP 293
V P R G+ + R R S + P PPGSP + GP
Sbjct: 1078 ----VGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP 1131
Score = 30.0 bits (66), Expect = 2.9
Identities = 53/181 (29%), Positives = 62/181 (34%), Gaps = 33/181 (18%)
Query: 148 GRESP---EATGVPERRGDPETRRNRKSLTPGSGEFGVRSQSCDSTVPESLERALWAQSS 204
G ESP E TGV +GD R R P G G+ Q
Sbjct: 98 GSESPTDQETTGVEGPKGDTGPRGPRGPAGP-PGRDGIPGQP------------------ 138
Query: 205 QLAGGPGLAPRPGASGRGRWVSAPLPPKGTE--TFFCVLPSALRAALSCG-PSWGEDSGP 261
L G PG PG G G + L E T +P + + G P GP
Sbjct: 139 GLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGP 198
Query: 262 RHRELRP-DPDSRRASAERSPRCPPGSPRKAG-------PGRRDARGAALGGAFRVLAGR 313
+ + P +P AS PR PPG P K G PGR RG R L G
Sbjct: 199 QGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGT 258
Query: 314 A 314
A
Sbjct: 259 A 259
Score = 28.9 bits (63), Expect = 6.4
Identities = 86/306 (28%), Positives = 97/306 (31%), Gaps = 55/306 (17%)
Query: 20 GPAQPLSA--GPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQG----RGC-GDGGGA 72
G A P A P D RG+ GP GA SG G RG GD G
Sbjct: 746 GDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEP 805
Query: 73 RVPTKS----VPG--GGPRASRSVREVAGGGFACNPGK-GPAAVRLALGGGWKISKSPIP 125
P + PG G P A + G A PG GPA PI
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAG-----------PPGPIG 854
Query: 126 VQMAAGAAGCRTQARGQRLT----SRGRESPEATGVPERRGDPETRRNRKSLTPGSGEFG 181
A GA G R A T + GR P P ++ GE G
Sbjct: 855 NVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETG 914
Query: 182 VRSQSCDSTVPESLERALWAQSSQLAGGPGLAP-RPGASG-RGRWVSAPLPPKGTETFFC 239
+ + P A + S A GP AP PG G G+ LP + E F
Sbjct: 915 PAGRPGEVGPPGPPGPA-GEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 973
Query: 240 VLPSALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGP----GR 295
LP GPS AS ER P P G P AGP GR
Sbjct: 974 GLPGPSGEPGKQGPSG-------------------ASGERGPPGPMGPPGLAGPPGESGR 1014
Query: 296 RDARGA 301
A GA
Sbjct: 1015 EGAPGA 1020
>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 39.7 bits (91), Expect = 0.004
Identities = 76/264 (28%), Positives = 88/264 (33%), Gaps = 60/264 (22%)
Query: 82 GGPRASRSVREVAG--------GGFACN--------PGKGPAAVRLALGGGWKISKSPIP 125
G P R VREV G +C PG+G + G G S P
Sbjct: 56 GAPGTQRGVREVGSPTRDQELRAGSSCGRAARGFPEPGRGGKTQKWGGGTGTPQSPGPCA 115
Query: 126 VQMAA-----GAAGCRTQARGQRLTSRGRESPEATGVPERRG-DPET--RRNRKSLTPGS 177
Q A G AGCRT+ +G + R P G +P T R SL S
Sbjct: 116 PQALASLLGPGKAGCRTRLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQAS 175
Query: 178 GEFGVRSQSCDSTVPESLER------ALWAQSSQLAGGPGLA----------PRPGASGR 221
RS + P SL+ A + GPG P P R
Sbjct: 176 -----RSGTVPGLPPASLQPLRLPYLAPPGPHDPTSRGPGRLLTCEPPSRKLPPPLPPCR 230
Query: 222 GRWVSAPLPPKGTETFFCVLPSALRAAL----SCGPSW------GEDSGPRHRELRPDPD 271
RWV AP P P ALR AL S PS G +G EL P
Sbjct: 231 SRWVLAPPPTVRPRLRVLTPPLALRRALPERGSRTPSTRSAVLSGRVAG-LGTELTLTPS 289
Query: 272 SRRASAERSPRCPPGSPRKAGPGR 295
SRRA P S R+A P R
Sbjct: 290 SRRAHGSH----PLSSERQAAPTR 309
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,285,116
Number of Sequences: 37866
Number of extensions: 1106912
Number of successful extensions: 5611
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 470
Number of HSP's that attempted gapping in prelim test: 4986
Number of HSP's gapped (non-prelim): 1030
length of query: 321
length of database: 18,247,518
effective HSP length: 102
effective length of query: 219
effective length of database: 14,385,186
effective search space: 3150355734
effective search space used: 3150355734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.