Guide to the Human Genome
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Name: LOC100128127 Sequence: fasta or formatted (153aa) NCBI GI: 239749929
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {153aa} PREDICTED: hypothetical protein
alt prot {153aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.7         24           3
 C cysteine            0.0          0           0
 D aspartate           2.0          3           1
 E glutamate           4.6          7           1
 F phenylalanine       1.3          2           1
 G glycine            10.5         16           1
 H histidine           2.0          3           1
 I isoleucine          2.0          3           2
 K lysine              0.7          1           1
 L leucine             7.2         11           2
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            17.0         26           3
 Q glutamine           1.3          2           2
 R arginine           15.7         24           3
 S serine             13.7         21           2
 T threonine           1.3          2           1
 V valine              1.3          2           1
 W tryptophan          2.0          3           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128127          1.000   PREDICTED: hypothetical protein 
LOC100128127          0.997   PREDICTED: hypothetical protein 
SYNJ1                 0.072   synaptojanin 1 isoform d 
SRRM2                 0.069   splicing coactivator subunit SRm300 
LOC645602             0.066   PREDICTED: hypothetical protein 
LOC645602             0.066   PREDICTED: hypothetical protein 
LOC645602             0.066   PREDICTED: hypothetical protein 
LOC100290265          0.066   PREDICTED: hypothetical protein XP_002346787 
C10orf95              0.066   hypothetical protein LOC79946 
MED25                 0.059   mediator complex subunit 25 
SYNJ1                 0.059   synaptojanin 1 isoform a 
SYNJ1                 0.059   synaptojanin 1 isoform b 
TAF4                  0.059   TBP-associated factor 4 
C9orf75               0.059   hypothetical protein LOC286262 isoform 2 
C9orf75               0.059   hypothetical protein LOC286262 isoform 1 
PABPN1                0.052   poly(A) binding protein, nuclear 1 
RASSF5                0.052   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.052   Ras association (RalGDS/AF-6) domain family 5 isofor...
LOC100289737          0.052   PREDICTED: hypothetical protein XP_002347183 
LOC100288678          0.052   PREDICTED: hypothetical protein XP_002343039 
COL11A2               0.052   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.052   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.052   collagen, type XI, alpha 2 isoform 1 preproprotein ...
FSCB                  0.052   fibrous sheath CABYR binding protein 
OGFR                  0.052   opioid growth factor receptor 
C6orf132              0.052   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.052   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.052   PREDICTED: hypothetical protein LOC647024 
PCLO                  0.052   piccolo isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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