Guide to the Human Genome
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Name: FAM63B Sequence: fasta or formatted (621aa) NCBI GI: 94721334
Description:

hypothetical protein LOC54629 isoform a

Referenced in:

Additional Conserved Proteins

Other entries for this name:
alt prot [620aa] hypothetical protein LOC54629 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         59           8
 C cysteine            2.1         13           1
 D aspartate           4.7         29           2
 E glutamate          11.1         69           4
 F phenylalanine       2.4         15           2
 G glycine             8.1         50           2
 H histidine           1.6         10           1
 I isoleucine          3.4         21           2
 K lysine              4.3         27           2
 L leucine             9.3         58           3
 M methionine          1.4          9           2
 N asparagine          3.7         23           2
 P proline             6.3         39           2
 Q glutamine           6.8         42           2
 R arginine            2.9         18           2
 S serine              9.5         59           3
 T threonine           4.2         26           1
 V valine              5.2         32           2
 W tryptophan          1.1          7           1
 Y tyrosine            2.4         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54629 isoform a 
FAM63B                0.995   hypothetical protein LOC54629 isoform b 
FAM63A                0.329   hypothetical protein LOC55793 isoform 4 
FAM63A                0.329   hypothetical protein LOC55793 isoform 3 
FAM63A                0.329   hypothetical protein LOC55793 isoform 1 
FAM63A                0.288   hypothetical protein LOC55793 isoform 2 
FAM63A                0.288   hypothetical protein LOC55793 isoform 2 
SOX4                  0.018   SRY (sex determining region Y)-box 4 
LOC100289737          0.017   PREDICTED: hypothetical protein XP_002347183 
LOC100288678          0.017   PREDICTED: hypothetical protein XP_002343039 
BRD4                  0.016   bromodomain-containing protein 4 isoform long 
LOC100133915          0.016   PREDICTED: hypothetical protein 
SCN2A                 0.015   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.015   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.015   sodium channel, voltage-gated, type II, alpha isofor...
MAP3K12               0.014   mitogen-activated protein kinase kinase kinase 12 [H...
MAGEE1                0.014   melanoma antigen family E, 1 
MARCKS                0.014   myristoylated alanine-rich protein kinase C substra...
MED12                 0.013   mediator complex subunit 12 
TBP                   0.013   TATA box binding protein 
GNAS                  0.013   GNAS complex locus XLas 
COL7A1                0.013   alpha 1 type VII collagen precursor 
LOC652586             0.012   PREDICTED: similar to facioscapulohumeral muscular ...
BSN                   0.012   bassoon protein 
COL3A1                0.012   collagen type III alpha 1 preproprotein 
MAML2                 0.012   mastermind-like 2 
BASP1                 0.011   brain abundant, membrane attached signal protein 1 [...
XYLT1                 0.011   xylosyltransferase I 
BAT2D1                0.011   HBxAg transactivated protein 2 
HRNR                  0.011   hornerin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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