Guide to the Human Genome
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Name: LOC100288678 Sequence: fasta or formatted (321aa) NCBI GI: 239744125
Description:

PREDICTED: hypothetical protein XP_002343039

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         38           2
 C cysteine            2.5          8           1
 D aspartate           2.5          8           1
 E glutamate           5.0         16           1
 F phenylalanine       1.6          5           2
 G glycine            16.8         54           3
 H histidine           0.6          2           1
 I isoleucine          0.9          3           1
 K lysine              2.5          8           1
 L leucine             6.9         22           2
 M methionine          0.9          3           1
 N asparagine          0.6          2           1
 P proline            10.9         35           2
 Q glutamine           2.8          9           1
 R arginine           13.4         43           3
 S serine             10.0         32           2
 T threonine           3.4         11           1
 V valine              5.0         16           1
 W tryptophan          1.9          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343039 
LOC100289737          1.000   PREDICTED: hypothetical protein XP_002347183 
LOC643355             0.035   PREDICTED: hypothetical protein 
LOC643355             0.035   PREDICTED: hypothetical protein 
FAM63B                0.033   hypothetical protein LOC54629 isoform a 
FAM63B                0.033   hypothetical protein LOC54629 isoform b 
ZNF469                0.030   zinc finger protein 469 
LOC100287688          0.028   PREDICTED: hypothetical protein XP_002342270 
ITPKB                 0.028   1D-myo-inositol-trisphosphate 3-kinase B 
LOC643355             0.028   PREDICTED: hypothetical protein 
LOC100292370          0.027   PREDICTED: hypothetical protein 
LOC100287514          0.027   PREDICTED: hypothetical protein XP_002343754 
PRR12                 0.027   proline rich 12 
DACH1                 0.025   dachshund homolog 1 isoform b 
DACH1                 0.025   dachshund homolog 1 isoform a 
DACH1                 0.025   dachshund homolog 1 isoform c 
LOC100287499          0.025   PREDICTED: hypothetical protein 
LOC100287499          0.025   PREDICTED: hypothetical protein XP_002343643 
ABCB10                0.024   ATP-binding cassette, sub-family B, member 10 [Homo...
LOC100291533          0.024   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.024   PREDICTED: hypothetical protein XP_002342946 
RP1L1                 0.024   retinitis pigmentosa 1-like 1 
LOC100128127          0.024   PREDICTED: hypothetical protein 
LOC100291624          0.024   PREDICTED: hypothetical protein XP_002345876 
LOC100128127          0.024   PREDICTED: hypothetical protein 
LOC100289712          0.024   PREDICTED: hypothetical protein XP_002346761 
LOC100128127          0.024   PREDICTED: hypothetical protein 
LOC100287455          0.024   PREDICTED: hypothetical protein XP_002342583 
COL1A1                0.024   alpha 1 type I collagen preproprotein 
LOC100292727          0.024   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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