Guide to the Human Genome
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Name: LOC643321 Sequence: fasta or formatted (671aa) NCBI GI: 239749791
Description:

PREDICTED: similar to hCG1644292

Not currently referenced in the text

Other entries for this name:
alt prot {671aa} PREDICTED: similar to hCG1644292
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         48           3
 C cysteine            2.2         15           2
 D aspartate           3.3         22           2
 E glutamate           7.2         48           2
 F phenylalanine       3.7         25           2
 G glycine             7.0         47           3
 H histidine           3.3         22           1
 I isoleucine          2.8         19           1
 K lysine              3.9         26           2
 L leucine             9.7         65           2
 M methionine          1.8         12           1
 N asparagine          4.5         30           1
 P proline             5.7         38           2
 Q glutamine           3.7         25           1
 R arginine            6.3         42           4
 S serine             11.0         74           3
 T threonine           7.2         48           2
 V valine              5.5         37           3
 W tryptophan          2.2         15           2
 Y tyrosine            1.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1644292 
LOC643321             0.997   PREDICTED: similar to hCG1644292 
CUBN                  0.320   cubilin 
ANKRD30B              0.160   ankyrin repeat domain 30B 
ANKRD30A              0.128   ankyrin repeat domain 30A 
LOC100292922          0.119   PREDICTED: similar to hCG1644292 
LOC100289959          0.119   PREDICTED: hypothetical protein XP_002348113 
LOC100289057          0.108   PREDICTED: hypothetical protein XP_002342968 
LOC100132785          0.108   PREDICTED: similar to hCG1644292 
LOC100132785          0.104   PREDICTED: similar to hCG1644292 
TLL1                  0.057   tolloid-like 1 
TLL2                  0.053   tolloid-like 2 
BMP1                  0.051   bone morphogenetic protein 1 isoform 3 precursor [Hom...
BMP1                  0.045   bone morphogenetic protein 1 isoform 1 precursor [Hom...
BMP1                  0.045   bone morphogenetic protein 1 isoform 2 precursor [Hom...
PCOLCE2               0.042   procollagen C-endopeptidase enhancer 2 
CDCP2                 0.040   CUB domain containing protein 2 
PCOLCE                0.036   procollagen C-endopeptidase enhancer 
CUZD1                 0.035   CUB and zona pellucida-like domains 1 
LOC729722             0.032   PREDICTED: ankyrin repeat domain-containing protein...
LOC730465             0.032   PREDICTED: similar to Putative ankyrin repeat domai...
LOC729722             0.032   PREDICTED: ankyrin repeat domain-containing protein...
NETO1                 0.031   neuropilin- and tolloid-like protein 1 isoform 3 pre...
NETO1                 0.031   neuropilin- and tolloid-like protein 1 isoform 2 pre...
LOC100291777          0.027   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.027   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.027   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.027   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.027   deleted in malignant brain tumors 1 isoform a precu...
NRP2                  0.027   neuropilin 2 isoform 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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