Guide to the Human Genome
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Name: LOC100292922 Sequence: fasta or formatted (118aa) NCBI GI: 239757619
Description:

PREDICTED: similar to hCG1644292

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6          9           2
 C cysteine            2.5          3           1
 D aspartate           1.7          2           1
 E glutamate          15.3         18           2
 F phenylalanine       0.8          1           1
 G glycine             5.1          6           1
 H histidine           0.0          0           0
 I isoleucine          3.4          4           1
 K lysine             11.0         13           1
 L leucine             4.2          5           1
 M methionine          2.5          3           1
 N asparagine          1.7          2           1
 P proline             5.9          7           1
 Q glutamine           2.5          3           1
 R arginine            4.2          5           1
 S serine              6.8          8           1
 T threonine          16.1         19           2
 V valine              6.8          8           1
 W tryptophan          1.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1644292 
LOC100289959          1.000   PREDICTED: hypothetical protein XP_002348113 
LOC100289057          0.844   PREDICTED: hypothetical protein XP_002342968 
LOC100132785          0.844   PREDICTED: similar to hCG1644292 
LOC100132785          0.816   PREDICTED: similar to hCG1644292 
LOC643321             0.759   PREDICTED: similar to hCG1644292 
LOC643321             0.755   PREDICTED: similar to hCG1644292 
ANKRD30B              0.684   ankyrin repeat domain 30B 
ANKRD30A              0.561   ankyrin repeat domain 30A 
DST                   0.028   dystonin isoform 4 
DST                   0.028   dystonin isoform 3 
DST                   0.028   dystonin isoform 2 
DST                   0.028   dystonin isoform 1 
DST                   0.028   dystonin isoform 1eA precursor 
AFF2                  0.028   fragile X mental retardation 2 
LOC729722             0.024   PREDICTED: ankyrin repeat domain-containing protein...
LOC730465             0.024   PREDICTED: similar to Putative ankyrin repeat domai...
LOC729722             0.024   PREDICTED: ankyrin repeat domain-containing protein...
PAPOLA                0.024   poly(A) polymerase alpha 
CWF19L2               0.024   CWF19-like 2, cell cycle control 
RANBP9                0.019   RAN binding protein 9 
MAGEA1                0.014   melanoma antigen family A, 1 
LOC100294236          0.014   PREDICTED: similar to diffuse panbronchiolitis crit...
NES                   0.009   nestin 
PDIA5                 0.009   protein disulfide isomerase A5 
LOC100130128          0.009   PREDICTED: hypothetical protein 
LOC100130128          0.009   PREDICTED: hypothetical protein 
LOC100130128          0.009   PREDICTED: hypothetical protein 
ZRSR2                 0.009   U2 small nuclear RNA auxiliary factor 1-like 2 
UTP14C                0.009   UTP14, U3 small nucleolar ribonucleoprotein, homolog...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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