Guide to the Human Genome
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Name: LOC100132785 Sequence: fasta or formatted (115aa) NCBI GI: 239758143
Description:

PREDICTED: similar to hCG1644292

Not currently referenced in the text

Other entries for this name:
alt prot {139aa} PREDICTED: similar to hCG1644292
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2          6           2
 C cysteine            2.6          3           1
 D aspartate           0.9          1           1
 E glutamate          15.7         18           2
 F phenylalanine       0.9          1           1
 G glycine             5.2          6           1
 H histidine           1.7          2           1
 I isoleucine          3.5          4           1
 K lysine             11.3         13           2
 L leucine             4.3          5           1
 M methionine          2.6          3           1
 N asparagine          0.9          1           1
 P proline             5.2          6           1
 Q glutamine           6.1          7           1
 R arginine            3.5          4           1
 S serine              7.0          8           1
 T threonine          13.9         16           2
 V valine              7.8          9           1
 W tryptophan          1.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1644292 
LOC100289057          0.962   PREDICTED: hypothetical protein XP_002342968 
LOC100132785          0.962   PREDICTED: similar to hCG1644292 
LOC100292922          0.832   PREDICTED: similar to hCG1644292 
LOC100289959          0.832   PREDICTED: hypothetical protein XP_002348113 
LOC643321             0.673   PREDICTED: similar to hCG1644292 
LOC643321             0.668   PREDICTED: similar to hCG1644292 
ANKRD30B              0.639   ankyrin repeat domain 30B 
ANKRD30A              0.534   ankyrin repeat domain 30A 
PAPOLA                0.038   poly(A) polymerase alpha 
ESCO1                 0.034   establishment of cohesion 1 homolog 1 
FAM151A               0.034   hypothetical protein LOC338094 
HAUS8                 0.019   sarcoma antigen NY-SAR-48 isoform b 
HAUS8                 0.019   sarcoma antigen NY-SAR-48 isoform a 
BRD1                  0.019   bromodomain containing protein 1 
NES                   0.019   nestin 
SRRT                  0.019   arsenate resistance protein 2 isoform d 
SRRT                  0.019   arsenate resistance protein 2 isoform a 
DST                   0.014   dystonin isoform 4 
DST                   0.014   dystonin isoform 3 
DST                   0.014   dystonin isoform 2 
DST                   0.014   dystonin isoform 1 
DST                   0.014   dystonin isoform 1eA precursor 
NIN                   0.014   ninein isoform 4 
NIN                   0.014   ninein isoform 5 
NIN                   0.014   ninein isoform 1 
NIN                   0.014   ninein isoform 2 
PDIA5                 0.010   protein disulfide isomerase A5 
RANBP9                0.010   RAN binding protein 9 
LOC100292655          0.010   PREDICTED: similar to armadillo repeat containing, ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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