Guide to the Human Genome
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Name: PCOLCE2 Sequence: fasta or formatted (415aa) NCBI GI: 7019483
Description:

procollagen C-endopeptidase enhancer 2

Referenced in:

Collagen

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         26           3
 C cysteine            3.6         15           1
 D aspartate           4.8         20           1
 E glutamate           4.1         17           1
 F phenylalanine       5.1         21           1
 G glycine             9.6         40           2
 H histidine           1.0          4           1
 I isoleucine          5.5         23           2
 K lysine              5.3         22           2
 L leucine             8.0         33           3
 M methionine          2.7         11           2
 N asparagine          5.8         24           1
 P proline             5.8         24           2
 Q glutamine           4.1         17           2
 R arginine            5.8         24           2
 S serine              5.3         22           2
 T threonine           6.7         28           3
 V valine              6.5         27           3
 W tryptophan          1.0          4           1
 Y tyrosine            3.1         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   procollagen C-endopeptidase enhancer 2 
PCOLCE                0.430   procollagen C-endopeptidase enhancer 
TLL2                  0.162   tolloid-like 2 
CDCP2                 0.162   CUB domain containing protein 2 
TLL1                  0.159   tolloid-like 1 
BMP1                  0.152   bone morphogenetic protein 1 isoform 1 precursor [Hom...
BMP1                  0.152   bone morphogenetic protein 1 isoform 2 precursor [Hom...
BMP1                  0.152   bone morphogenetic protein 1 isoform 3 precursor [Hom...
CUBN                  0.149   cubilin 
MFRP                  0.141   membrane frizzled-related protein 
NRP1                  0.139   neuropilin 1 isoform c 
NRP1                  0.139   neuropilin 1 isoform b 
NRP1                  0.139   neuropilin 1 isoform a 
NRP2                  0.127   neuropilin 2 isoform 3 precursor 
NRP2                  0.127   neuropilin 2 isoform 5 precursor 
NRP2                  0.127   neuropilin 2 isoform 1 precursor 
NRP2                  0.127   neuropilin 2 isoform 6 precursor 
NRP2                  0.127   neuropilin 2 isoform 4 precursor 
NRP2                  0.127   neuropilin 2 isoform 2 precursor 
OVCH2                 0.109   ovochymase 2 
CUZD1                 0.100   CUB and zona pellucida-like domains 1 
CSMD1                 0.091   CUB and Sushi multiple domains 1 
ST14                  0.090   matriptase 
CSMD3                 0.084   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.084   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.084   CUB and Sushi multiple domains 3 isoform 1 
MASP1                 0.080   mannan-binding lectin serine protease 1 isoform 3 [H...
MASP1                 0.080   mannan-binding lectin serine protease 1 isoform 2 pr...
MASP1                 0.080   mannan-binding lectin serine protease 1 isoform 1 pr...
CSMD2                 0.079   CUB and Sushi multiple domains 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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