Guide to the Human Genome
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Name: LOC100289057 Sequence: fasta or formatted (139aa) NCBI GI: 239743843
Description:

PREDICTED: hypothetical protein XP_002342968

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          6           2
 C cysteine            3.6          5           1
 D aspartate           1.4          2           1
 E glutamate          14.4         20           2
 F phenylalanine       2.2          3           1
 G glycine             5.8          8           1
 H histidine           1.4          2           1
 I isoleucine          2.9          4           1
 K lysine              9.4         13           2
 L leucine             5.0          7           1
 M methionine          2.2          3           1
 N asparagine          1.4          2           1
 P proline             5.8          8           1
 Q glutamine           3.6          5           1
 R arginine            4.3          6           1
 S serine              7.9         11           1
 T threonine          11.5         16           2
 V valine              9.4         13           2
 W tryptophan          2.9          4           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342968 
LOC100132785          1.000   PREDICTED: similar to hCG1644292 
LOC100132785          0.760   PREDICTED: similar to hCG1644292 
LOC100292922          0.681   PREDICTED: similar to hCG1644292 
LOC100289959          0.681   PREDICTED: hypothetical protein XP_002348113 
LOC643321             0.555   PREDICTED: similar to hCG1644292 
LOC643321             0.548   PREDICTED: similar to hCG1644292 
ANKRD30B              0.529   ankyrin repeat domain 30B 
ANKRD30A              0.445   ankyrin repeat domain 30A 
ESCO1                 0.030   establishment of cohesion 1 homolog 1 
PAPOLA                0.030   poly(A) polymerase alpha 
FAM151A               0.027   hypothetical protein LOC338094 
LOC729722             0.019   PREDICTED: ankyrin repeat domain-containing protein...
LOC730465             0.019   PREDICTED: similar to Putative ankyrin repeat domai...
LOC729722             0.019   PREDICTED: ankyrin repeat domain-containing protein...
HAUS8                 0.019   sarcoma antigen NY-SAR-48 isoform b 
HAUS8                 0.019   sarcoma antigen NY-SAR-48 isoform a 
RANBP9                0.015   RAN binding protein 9 
SRRT                  0.015   arsenate resistance protein 2 isoform d 
SRRT                  0.015   arsenate resistance protein 2 isoform a 
BRD1                  0.011   bromodomain containing protein 1 
DST                   0.011   dystonin isoform 4 
DST                   0.011   dystonin isoform 3 
DST                   0.011   dystonin isoform 2 
DST                   0.011   dystonin isoform 1 
DST                   0.011   dystonin isoform 1eA precursor 
AFF2                  0.011   fragile X mental retardation 2 
ZAN                   0.011   zonadhesin isoform 3 
ZAN                   0.011   zonadhesin isoform 6 
NES                   0.008   nestin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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